Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF13976
Short namegag_pre-integrs
Long nameGAG-pre-integrase domain
Proteins with at least one of this domain85
Total domain count85
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|012800 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.3E-10 289 356
PF00665 rve Integrase core domain 7.8E-08 370 470
AgabiH97|012910 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.0E-10 282 349
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-61 788 1031
AgabiH97|012970 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.8E-10 221 288
AgabiH97|013120 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.6E-08 26 82
AgabiH97|016290 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.7E-13 96 209
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.3E-07 475 519
PF00665 rve Integrase core domain 9.0E-14 534 630
AgabiH97|016530 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.3E-08 91 207
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.3E-12 468 541
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-36 933 1106
AgabiH97|018110 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.6E-10 106 173
AgabiH97|018140 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.7E-09 258 325
AgabiH97|018160 PF13976 gag_pre-integrs GAG-pre-integrase domain 3.3E-08 285 352
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.3E-64 791 1034
AgabiH97|018200 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.5E-07 282 348
AgabiH97|018230 PF13976 gag_pre-integrs GAG-pre-integrase domain 6.3E-11 281 348
AgabiH97|018260 PF13976 gag_pre-integrs GAG-pre-integrase domain 7.7E-10 285 352
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-07 822 873
AgabiH97|018290 PF13976 gag_pre-integrs GAG-pre-integrase domain 6.0E-10 204 271
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.7E-64 709 952
AgabiH97|018330 PF13976 gag_pre-integrs GAG-pre-integrase domain 5.3E-11 281 348
AgabiH97|018380 PF13976 gag_pre-integrs GAG-pre-integrase domain 3.4E-10 29 96
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-63 515 758
AgabiH97|018410 PF13976 gag_pre-integrs GAG-pre-integrase domain 3.4E-11 282 349
AgabiH97|020970 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.2E-08 236 285
PF00665 rve Integrase core domain 3.0E-14 299 396
AgabiH97|025330 PF13976 gag_pre-integrs GAG-pre-integrase domain 3.0E-10 260 327
AgabiH97|025340 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.2E-12 62 201
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.7E-10 431 498
AgabiH97|025990 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.1E-11 95 222
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.7E-12 517 587
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.8E-48 977 1217
AgabiH97|027490 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-09 89 214
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.7E-10 468 541
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.6E-50 971 1210
AgabiH97|027890 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.0E-07 78 189
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.9E-08 1026 1076
PF00665 rve Integrase core domain 8.8E-13 1090 1187
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-65 1610 1841
AgabiH97|028980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.5E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 6.4E-08 456 524
PF00665 rve Integrase core domain 4.7E-14 542 635
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-15 914 966
AgabiH97|030810 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.1E-13 93 219
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.5E-12 459 529
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.1E-45 917 1155
AgabiH97|030830 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.2E-11 62 204
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.6E-10 431 498
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 6.2E-64 936 1179
AgabiH97|030860 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.7E-10 304 371
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 5.2E-64 790 1033
AgabiH97|031010 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.7E-10 286 352
AgabiH97|031060 PF13976 gag_pre-integrs GAG-pre-integrase domain 8.1E-11 278 345
AgabiH97|031100 PF13976 gag_pre-integrs GAG-pre-integrase domain 9.1E-11 34 100
AgabiH97|032400 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 4.6E-09 102 223
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.7E-13 512 585
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 5.7E-49 984 1225
AgabiH97|035360 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.4E-13 89 206
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.7E-12 514 586
PF00665 rve Integrase core domain 2.1E-08 600 700
AgabiH97|036590 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.3E-10 285 352
AgabiH97|036620 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.8E-10 281 348
PF00665 rve Integrase core domain 6.3E-08 362 462
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-64 783 1026
AgabiH97|036690 PF13976 gag_pre-integrs GAG-pre-integrase domain 9.4E-10 285 352
AgabiH97|036730 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.1E-10 281 348
PF00665 rve Integrase core domain 5.4E-08 362 462
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.2E-64 786 1029
AgabiH97|036780 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.2E-10 106 173
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.6E-65 612 855
AgabiH97|036810 PF13976 gag_pre-integrs GAG-pre-integrase domain 5.3E-11 285 352
AgabiH97|036980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-12 77 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.1E-11 460 534
PF00665 rve Integrase core domain 1.1E-09 549 648
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.2E-52 934 1173
AgabiH97|039170 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.8E-11 91 217
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.6E-13 497 567
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 7.4E-46 958 1191
AgabiH97|039240 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.1E-08 113 223
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.4E-07 741 785
PF00665 rve Integrase core domain 1.9E-10 801 896
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.4E-67 1320 1555
AgabiH97|039810 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.9E-12 353 426
AgabiH97|039900 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.3E-07 81 188
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.8E-08 1027 1077
PF00665 rve Integrase core domain 3.3E-13 1091 1188
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.8E-65 1611 1842
AgabiH97|044710 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-10 88 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 6.0E-14 513 583
AgabiH97|045050 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.2E-11 92 159
PF00665 rve Integrase core domain 6.7E-08 173 273
AgabiH97|045150 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.3E-10 277 344
AgabiH97|045190 PF13976 gag_pre-integrs GAG-pre-integrase domain 6.0E-11 183 250
AgabiH97|045240 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.9E-09 285 352
AgabiH97|050950 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.2E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.7E-08 435 503
PF00665 rve Integrase core domain 3.3E-14 521 614
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 5.3E-68 893 1137
AgabiH97|051280 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.8E-08 98 167
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.4E-08 427 495
PF00665 rve Integrase core domain 1.7E-14 512 606
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-66 883 1128
AgabiH97|060170 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.5E-10 285 352
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 7.2E-64 763 1006
AgabiH97|060340 PF13976 gag_pre-integrs GAG-pre-integrase domain 8.9E-10 114 173
AgabiH97|060420 PF13976 gag_pre-integrs GAG-pre-integrase domain 9.0E-11 249 316
AgabiH97|060580 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.1E-06 16 116
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.1E-07 640 684
PF00665 rve Integrase core domain 2.2E-10 700 795
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.2E-65 1219 1454
AgabiH97|060590 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.2E-06 185 237
AgabiH97|060630 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.1E-10 108 173
AgabiH97|075680 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.1E-09 285 352
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.9E-39 790 932
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.5E-08 948 1017
AgabiH97|075710 PF13976 gag_pre-integrs GAG-pre-integrase domain 7.7E-10 285 352
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.0E-22 791 887
AgabiH97|075730 PF13976 gag_pre-integrs GAG-pre-integrase domain 5.9E-10 289 356
AgabiH97|075790 PF13976 gag_pre-integrs GAG-pre-integrase domain 5.6E-11 106 173
AgabiH97|076160 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 4.3E-08 2 113
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.9E-09 672 715
PF00665 rve Integrase core domain 6.1E-11 731 824
AgabiH97|079510 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.6E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.2E-08 583 632
PF00665 rve Integrase core domain 1.7E-13 645 743
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.8E-69 1142 1378
AgabiH97|079920 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.7E-10 94 219
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.1E-14 510 580
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.5E-50 956 1196
AgabiH97|082000 PF13976 gag_pre-integrs GAG-pre-integrase domain 8.6E-09 106 173
AgabiH97|082080 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.0E-10 217 284
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-62 723 966
AgabiH97|082100 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 7.2E-10 14 129
PF13976 gag_pre-integrs GAG-pre-integrase domain 5.5E-09 359 425
AgabiH97|082120 PF13976 gag_pre-integrs GAG-pre-integrase domain 5.0E-10 289 356
AgabiH97|082140 PF13976 gag_pre-integrs GAG-pre-integrase domain 3.2E-10 106 173
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.6E-57 624 835
AgabiH97|082150 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.6E-11 52 119
AgabiH97|089860 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.3E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.9E-08 456 524
PF00665 rve Integrase core domain 5.3E-14 541 635
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.3E-68 914 1158
AgabiH97|093930 PF13976 gag_pre-integrs GAG-pre-integrase domain 7.7E-11 278 345
AgabiH97|094000 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.8E-11 218 285
PF00665 rve Integrase core domain 4.9E-08 299 399
AgabiH97|094040 PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.1E-44 23 190
PF13976 gag_pre-integrs GAG-pre-integrase domain 5.3E-10 521 588
PF00665 rve Integrase core domain 5.6E-08 602 702
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.7E-64 1026 1269
AgabiH97|094220 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.8E-11 96 235
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.0E-10 450 517
AgabiH97|096660 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-15 112 245
PF00098 zf-CCHC Zinc knuckle 2.7E-04 295 311
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-13 475 534
PF00665 rve Integrase core domain 5.3E-12 550 648
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-63 926 1163
AgabiH97|098440 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.2E-09 218 284
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-17 723 803
AgabiH97|098460 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.8E-11 281 348
AgabiH97|106710 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.0E-09 285 352
PF00665 rve Integrase core domain 6.4E-08 366 466
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.2E-64 790 1033
AgabiH97|106850 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.5E-10 224 291
AgabiH97|107070 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.1E-10 217 284
AgabiH97|107090 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.2E-10 221 288
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-11 727 794
AgabiH97|107300 PF13976 gag_pre-integrs GAG-pre-integrase domain 8.5E-07 422 466
AgabiH97|117900 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.3E-10 285 352
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.6E-63 791 1034
AgabiH97|118090 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.4E-11 49 116
PF00665 rve Integrase core domain 2.2E-08 130 230
AgabiH97|118130 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.6E-10 253 320
AgabiH97|118360 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.8E-10 217 284

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