Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF08284
Short nameRVP_2
Long nameRetroviral aspartyl protease
Proteins with at least one of this domain37
Total domain count37
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|012730 PF13650 Asp_protease_2 Aspartyl protease 2.1E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 6.5E-09 26 117
PF08284 RVP_2 Retroviral aspartyl protease 7.7E-10 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.4E-10 255 358
AgabiH97|013210 PF13650 Asp_protease_2 Aspartyl protease 1.0E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 5.7E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 2.6E-09 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.4E-17 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.6E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.2E-19 723 780
PF00665 rve Integrase core domain 1.0E-11 798 894
AgabiH97|013410 PF13650 Asp_protease_2 Aspartyl protease 2.0E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.3E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 6.0E-09 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.1E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.7E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.3E-19 723 780
PF00665 rve Integrase core domain 1.0E-11 798 894
AgabiH97|016510 PF13650 Asp_protease_2 Aspartyl protease 1.3E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 8.0E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.0E-09 34 133
AgabiH97|020610 PF13650 Asp_protease_2 Aspartyl protease 1.1E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.2E-07 27 117
PF08284 RVP_2 Retroviral aspartyl protease 1.0E-08 34 131
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.5E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.3E-19 724 780
PF00665 rve Integrase core domain 9.3E-12 798 894
AgabiH97|025620 PF13650 Asp_protease_2 Aspartyl protease 9.8E-09 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 4.2E-09 26 117
PF08284 RVP_2 Retroviral aspartyl protease 2.4E-11 34 132
AgabiH97|025750 PF08284 RVP_2 Retroviral aspartyl protease 1.6E-04 121 220
AgabiH97|032380 PF13650 Asp_protease_2 Aspartyl protease 1.3E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 8.4E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 2.4E-09 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.0E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.9E-37 441 537
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.8E-38 469 571
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.2E-19 685 741
PF00665 rve Integrase core domain 1.0E-10 759 855
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-09 1055 1104
AgabiH97|033050 PF08284 RVP_2 Retroviral aspartyl protease 7.3E-06 925 1038
PF13650 Asp_protease_2 Aspartyl protease 1.1E-05 933 1020
AgabiH97|036450 PF16297 DUF4939 Domain of unknown function (DUF4939) 2.6E-08 175 267
PF19259 Ty3_capsid Ty3 transposon capsid-like protein 7.3E-11 175 346
PF03732 Retrotrans_gag Retrotransposon gag protein 4.5E-08 223 320
PF08284 RVP_2 Retroviral aspartyl protease 1.0E-04 539 637
AgabiH97|039690 PF13650 Asp_protease_2 Aspartyl protease 4.0E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 5.3E-07 27 117
PF08284 RVP_2 Retroviral aspartyl protease 1.5E-08 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.7E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.4E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.0E-19 724 780
PF00665 rve Integrase core domain 6.4E-11 798 894
AgabiH97|039850 PF13650 Asp_protease_2 Aspartyl protease 2.1E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 6.6E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 4.4E-09 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.0E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.1E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.0E-38 508 610
AgabiH97|040720 PF13650 Asp_protease_2 Aspartyl protease 1.1E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 5.0E-09 26 117
PF08284 RVP_2 Retroviral aspartyl protease 6.9E-10 34 132
AgabiH97|041140 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-06 136 199
PF00098 zf-CCHC Zinc knuckle 3.6E-04 306 321
PF13650 Asp_protease_2 Aspartyl protease 7.8E-07 362 452
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.3E-08 364 454
PF08284 RVP_2 Retroviral aspartyl protease 2.1E-09 371 469
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 9.3E-11 645 730
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 796 892
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.6E-38 824 926
AgabiH97|041700 PF08284 RVP_2 Retroviral aspartyl protease 8.7E-05 354 454
AgabiH97|044720 PF08284 RVP_2 Retroviral aspartyl protease 3.3E-04 376 476
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.8E-23 835 996
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.3E-08 1059 1102
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.3E-19 1104 1169
PF17921 Integrase_H2C2 Integrase zinc binding domain 7.6E-20 1283 1341
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1655 1704
AgabiH97|044810 PF13650 Asp_protease_2 Aspartyl protease 9.1E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 5.6E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 2.3E-11 32 134
AgabiH97|048860 PF13650 Asp_protease_2 Aspartyl protease 5.3E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.5E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 1.7E-09 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.9E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 8.3E-38 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.7E-39 508 610
AgabiH97|048890 PF13650 Asp_protease_2 Aspartyl protease 1.3E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 8.2E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 4.4E-09 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.0E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.9E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.3E-09 1094 1143
AgabiH97|059850 PF13650 Asp_protease_2 Aspartyl protease 5.8E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.1E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 7.6E-10 34 132
AgabiH97|060040 PF16297 DUF4939 Domain of unknown function (DUF4939) 1.9E-07 165 257
PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.8E-11 165 336
PF03732 Retrotrans_gag Retrotransposon gag protein 7.4E-09 213 310
PF08284 RVP_2 Retroviral aspartyl protease 3.5E-05 527 625
AgabiH97|068840 PF03732 Retrotrans_gag Retrotransposon gag protein 6.3E-05 108 195
PF08284 RVP_2 Retroviral aspartyl protease 9.1E-05 376 476
AgabiH97|075560 PF00098 zf-CCHC Zinc knuckle 2.0E-06 193 209
PF08284 RVP_2 Retroviral aspartyl protease 4.8E-05 340 444
AgabiH97|076080 PF13650 Asp_protease_2 Aspartyl protease 1.4E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 6.1E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 3.6E-09 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.7E-14 267 396
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.6E-37 462 558
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 4.2E-38 490 592
AgabiH97|076140 PF16297 DUF4939 Domain of unknown function (DUF4939) 8.8E-08 161 253
PF19259 Ty3_capsid Ty3 transposon capsid-like protein 5.0E-11 162 330
PF03732 Retrotrans_gag Retrotransposon gag protein 7.9E-09 209 306
PF08284 RVP_2 Retroviral aspartyl protease 5.6E-05 525 623
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.9E-32 788 947
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.4E-30 1011 1106
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.4E-33 1036 1141
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.8E-13 1262 1311
AgabiH97|081830 PF13650 Asp_protease_2 Aspartyl protease 2.0E-07 466 549
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.3E-08 466 551
PF08284 RVP_2 Retroviral aspartyl protease 8.7E-06 469 564
AgabiH97|082290 PF13650 Asp_protease_2 Aspartyl protease 7.8E-08 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 8.7E-09 27 117
PF08284 RVP_2 Retroviral aspartyl protease 1.5E-10 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.7E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.0E-38 508 610
AgabiH97|082310 PF08284 RVP_2 Retroviral aspartyl protease 1.4E-05 54 154
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.2E-16 371 532
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.4E-20 598 701
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 6.7E-28 630 731
AgabiH97|082340 PF13650 Asp_protease_2 Aspartyl protease 3.3E-05 1 80
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.5E-06 1 82
PF08284 RVP_2 Retroviral aspartyl protease 4.7E-10 2 97
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.4E-19 220 379
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-37 445 541
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 9.6E-39 473 575
AgabiH97|084990 PF08284 RVP_2 Retroviral aspartyl protease 5.8E-08 912 1021
AgabiH97|098250 PF08284 RVP_2 Retroviral aspartyl protease 7.1E-06 76 176
AgabiH97|108080 PF13650 Asp_protease_2 Aspartyl protease 5.0E-06 31 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.0E-07 32 117
PF08284 RVP_2 Retroviral aspartyl protease 2.1E-09 34 133
AgabiH97|110130 PF13650 Asp_protease_2 Aspartyl protease 4.0E-07 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 2.6E-08 26 117
PF08284 RVP_2 Retroviral aspartyl protease 1.0E-09 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.2E-19 255 414
AgabiH97|113140 PF08284 RVP_2 Retroviral aspartyl protease 3.2E-04 76 176
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 3.8E-22 535 699
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.8E-29 744 844
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 4.6E-33 770 875
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.6E-20 989 1047
AgabiH97|117630 PF13650 Asp_protease_2 Aspartyl protease 5.6E-08 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 2.1E-09 27 117
PF08284 RVP_2 Retroviral aspartyl protease 5.3E-10 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 2.0E-19 255 414
AgabiH97|118430 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-07 145 216
PF00098 zf-CCHC Zinc knuckle 1.3E-03 295 311
PF00098 zf-CCHC Zinc knuckle 4.1E-04 323 338
PF13650 Asp_protease_2 Aspartyl protease 1.8E-06 379 469
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.2E-07 381 471
PF08284 RVP_2 Retroviral aspartyl protease 5.4E-09 388 487
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-18 609 768
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-36 834 930
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.6E-38 862 964
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-19 1078 1134
PF00665 rve Integrase core domain 4.4E-10 1152 1248
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.7E-09 1448 1497
AgabiH97|119560 PF08284 RVP_2 Retroviral aspartyl protease 3.4E-09 2 98
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.7E-20 220 379
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-16 445 496

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