Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF03732
Short nameRetrotrans_gag
Long nameRetrotransposon gag protein
Proteins with at least one of this domain123
Total domain count123
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|001790 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|012390 PF03732 Retrotrans_gag Retrotransposon gag protein 3.4E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.9E-04 327 342
AgabiH97|012430 PF03732 Retrotrans_gag Retrotransposon gag protein 3.4E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.9E-04 327 342
AgabiH97|012720 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-08 144 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|012770 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 144 216
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|012860 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|012930 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|013020 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|013060 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|013150 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|013180 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-08 145 216
AgabiH97|013190 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|013390 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-08 14 81
AgabiH97|013420 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|016310 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|016520 PF03732 Retrotrans_gag Retrotransposon gag protein 4.7E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|017950 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-08 141 215
PF00098 zf-CCHC Zinc knuckle 7.0E-04 295 309
AgabiH97|018080 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-06 105 192
PF00098 zf-CCHC Zinc knuckle 3.1E-06 278 293
AgabiH97|018370 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|019420 PF03732 Retrotrans_gag Retrotransposon gag protein 2.2E-05 12 78
PF00098 zf-CCHC Zinc knuckle 1.8E-06 164 179
AgabiH97|019460 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|020600 PF03732 Retrotrans_gag Retrotransposon gag protein 6.8E-06 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|023430 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|023940 PF03732 Retrotrans_gag Retrotransposon gag protein 9.0E-06 106 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|023960 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|025610 PF03732 Retrotrans_gag Retrotransposon gag protein 1.3E-08 145 215
AgabiH97|025680 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|025760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.7E-06 106 193
AgabiH97|025800 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 8.2E-10 3 137
PF03732 Retrotrans_gag Retrotransposon gag protein 7.1E-10 26 113
AgabiH97|026120 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|027190 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|027800 PF03732 Retrotrans_gag Retrotransposon gag protein 3.3E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|028590 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|032360 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|032390 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 1.4E-03 323 338
AgabiH97|035270 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|035300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|035320 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|035350 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|036450 PF16297 DUF4939 Domain of unknown function (DUF4939) 2.6E-08 175 267
PF19259 Ty3_capsid Ty3 transposon capsid-like protein 7.3E-11 175 346
PF03732 Retrotrans_gag Retrotransposon gag protein 4.5E-08 223 320
PF08284 RVP_2 Retroviral aspartyl protease 1.0E-04 539 637
AgabiH97|039100 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|039220 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|039290 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 109 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 282 297
AgabiH97|039300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.2E-05 93 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|039680 PF03732 Retrotrans_gag Retrotransposon gag protein 6.3E-06 145 201
AgabiH97|039860 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|040730 PF03732 Retrotrans_gag Retrotransposon gag protein 7.4E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|041140 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-06 136 199
PF00098 zf-CCHC Zinc knuckle 3.6E-04 306 321
PF13650 Asp_protease_2 Aspartyl protease 7.8E-07 362 452
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.3E-08 364 454
PF08284 RVP_2 Retroviral aspartyl protease 2.1E-09 371 469
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 9.3E-11 645 730
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 796 892
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.6E-38 824 926
AgabiH97|044820 PF03732 Retrotrans_gag Retrotransposon gag protein 9.2E-08 145 215
AgabiH97|048810 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|048850 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.3E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|048900 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.3E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|050280 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050300 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050340 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050800 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050810 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-05 49 136
PF00098 zf-CCHC Zinc knuckle 2.9E-06 222 237
AgabiH97|051060 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|051170 PF03732 Retrotrans_gag Retrotransposon gag protein 2.7E-07 156 222
PF00098 zf-CCHC Zinc knuckle 1.9E-07 303 320
PF00098 zf-CCHC Zinc knuckle 1.9E-04 326 341
AgabiH97|059840 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-08 144 216
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|059900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.7E-09 135 215
AgabiH97|060040 PF16297 DUF4939 Domain of unknown function (DUF4939) 1.9E-07 165 257
PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.8E-11 165 336
PF03732 Retrotrans_gag Retrotransposon gag protein 7.4E-09 213 310
PF08284 RVP_2 Retroviral aspartyl protease 3.5E-05 527 625
AgabiH97|060070 PF03732 Retrotrans_gag Retrotransposon gag protein 1.8E-09 135 214
AgabiH97|060300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|062760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 1.0E-05 282 296
AgabiH97|064000 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|066160 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|066750 PF03732 Retrotrans_gag Retrotransposon gag protein 1.2E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|068840 PF03732 Retrotrans_gag Retrotransposon gag protein 6.3E-05 108 195
PF08284 RVP_2 Retroviral aspartyl protease 9.1E-05 376 476
AgabiH97|069720 PF03732 Retrotrans_gag Retrotransposon gag protein 2.3E-05 108 195
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-24 830 991
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.3E-30 1054 1154
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-33 1080 1185
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.6E-20 1299 1357
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1671 1720
AgabiH97|076040 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.5E-10 29 165
PF03732 Retrotrans_gag Retrotransposon gag protein 6.0E-10 54 141
AgabiH97|076090 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-08 142 213
PF00098 zf-CCHC Zinc knuckle 5.9E-03 293 307
PF00098 zf-CCHC Zinc knuckle 1.2E-05 321 336
AgabiH97|076140 PF16297 DUF4939 Domain of unknown function (DUF4939) 8.8E-08 161 253
PF19259 Ty3_capsid Ty3 transposon capsid-like protein 5.0E-11 162 330
PF03732 Retrotrans_gag Retrotransposon gag protein 7.9E-09 209 306
PF08284 RVP_2 Retroviral aspartyl protease 5.6E-05 525 623
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.9E-32 788 947
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.4E-30 1011 1106
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.4E-33 1036 1141
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.8E-13 1262 1311
AgabiH97|076200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.8E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|077350 PF03732 Retrotrans_gag Retrotransposon gag protein 1.3E-05 75 162
PF00098 zf-CCHC Zinc knuckle 2.8E-06 248 263
AgabiH97|078540 PF03732 Retrotrans_gag Retrotransposon gag protein 3.8E-08 144 215
PF00098 zf-CCHC Zinc knuckle 3.8E-06 323 338
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-31 809 896
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.8E-20 837 896
AgabiH97|078580 PF03732 Retrotrans_gag Retrotransposon gag protein 2.1E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|078590 PF03732 Retrotrans_gag Retrotransposon gag protein 2.2E-07 68 134
PF00098 zf-CCHC Zinc knuckle 1.1E-05 215 232
PF00098 zf-CCHC Zinc knuckle 1.3E-04 238 253
AgabiH97|078630 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-05 104 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|079520 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|081720 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.8E-10 23 146
PF16297 DUF4939 Domain of unknown function (DUF4939) 1.6E-08 24 109
PF03732 Retrotrans_gag Retrotransposon gag protein 5.9E-07 65 146
AgabiH97|081760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|082300 PF03732 Retrotrans_gag Retrotransposon gag protein 3.5E-08 145 215
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|082330 PF03732 Retrotrans_gag Retrotransposon gag protein 8.9E-08 143 214
PF00098 zf-CCHC Zinc knuckle 7.7E-04 294 308
PF00098 zf-CCHC Zinc knuckle 2.0E-03 322 337
AgabiH97|082480 PF03732 Retrotrans_gag Retrotransposon gag protein 1.2E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.0E-05 281 296
AgabiH97|084890 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-07 156 222
PF00098 zf-CCHC Zinc knuckle 9.7E-07 303 320
PF00098 zf-CCHC Zinc knuckle 1.9E-04 326 341
AgabiH97|085020 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|087610 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|089440 PF03732 Retrotrans_gag Retrotransposon gag protein 5.3E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|089900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|092280 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|094270 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-07 146 213
PF00098 zf-CCHC Zinc knuckle 9.4E-07 294 311
AgabiH97|096320 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|097690 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|097700 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 123 195
AgabiH97|097970 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-05 20 107
PF00098 zf-CCHC Zinc knuckle 2.1E-06 193 208
AgabiH97|097990 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|098730 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-08 144 215
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|100680 PF03732 Retrotrans_gag Retrotransposon gag protein 1.3E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|100700 PF03732 Retrotrans_gag Retrotransposon gag protein 1.7E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|100760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|100790 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|107040 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|107900 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|108090 PF03732 Retrotrans_gag Retrotransposon gag protein 7.8E-09 144 215
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|108150 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.6E-09 29 165
PF03732 Retrotrans_gag Retrotransposon gag protein 6.8E-10 54 141
AgabiH97|108250 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.2E-04 326 342
AgabiH97|110120 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|110170 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|110190 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.0E-06 281 296
AgabiH97|110250 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 109 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 282 297
AgabiH97|113100 PF03732 Retrotrans_gag Retrotransposon gag protein 4.8E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|113130 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|113150 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|117620 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-08 144 215
PF00098 zf-CCHC Zinc knuckle 3.8E-04 295 309
AgabiH97|117680 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 6.5E-09 29 164
PF03732 Retrotrans_gag Retrotransposon gag protein 6.0E-10 54 141
AgabiH97|117730 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.2E-08 170 305
PF03732 Retrotrans_gag Retrotransposon gag protein 1.0E-09 195 282
AgabiH97|118350 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 4.1E-10 29 164
PF03732 Retrotrans_gag Retrotransposon gag protein 6.0E-10 54 141
AgabiH97|118430 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-07 145 216
PF00098 zf-CCHC Zinc knuckle 1.3E-03 295 311
PF00098 zf-CCHC Zinc knuckle 4.1E-04 323 338
PF13650 Asp_protease_2 Aspartyl protease 1.8E-06 379 469
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.2E-07 381 471
PF08284 RVP_2 Retroviral aspartyl protease 5.4E-09 388 487
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-18 609 768
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-36 834 930
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.6E-38 862 964
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-19 1078 1134
PF00665 rve Integrase core domain 4.4E-10 1152 1248
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.7E-09 1448 1497
AgabiH97|119100 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 3.7E-10 29 164
PF03732 Retrotrans_gag Retrotransposon gag protein 6.8E-10 54 141
AgabiH97|119510 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-06 101 188
PF00098 zf-CCHC Zinc knuckle 3.1E-06 274 289
AgabiH97|119640 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|119660 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 102 189
PF00098 zf-CCHC Zinc knuckle 3.1E-06 275 290

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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