Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00665
Short namerve
Long nameIntegrase core domain
Proteins with at least one of this domain61
Total domain count61
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|012450 PF17921 Integrase_H2C2 Integrase zinc binding domain 6.3E-11 1 33
PF00665 rve Integrase core domain 4.9E-13 51 147
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-09 347 396
AgabiH97|012750 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 9.4E-38 95 191
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 8.7E-39 123 225
PF17921 Integrase_H2C2 Integrase zinc binding domain 7.3E-20 338 395
PF00665 rve Integrase core domain 5.5E-12 413 509
AgabiH97|012780 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.2E-17 234 393
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.9E-37 459 555
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.8E-38 487 589
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.4E-19 702 759
PF00665 rve Integrase core domain 1.1E-11 777 873
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.9E-09 1073 1122
AgabiH97|012800 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.3E-10 289 356
PF00665 rve Integrase core domain 7.8E-08 370 470
AgabiH97|013210 PF13650 Asp_protease_2 Aspartyl protease 1.0E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 5.7E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 2.6E-09 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.4E-17 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.6E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.2E-19 723 780
PF00665 rve Integrase core domain 1.0E-11 798 894
AgabiH97|013320 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.3E-13 96 204
PF00665 rve Integrase core domain 1.4E-16 532 628
AgabiH97|013370 PF17921 Integrase_H2C2 Integrase zinc binding domain 4.7E-11 1 33
PF00665 rve Integrase core domain 4.9E-13 51 147
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.3E-09 347 396
AgabiH97|013410 PF13650 Asp_protease_2 Aspartyl protease 2.0E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.3E-07 26 117
PF08284 RVP_2 Retroviral aspartyl protease 6.0E-09 34 132
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 8.1E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.7E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.3E-19 723 780
PF00665 rve Integrase core domain 1.0E-11 798 894
AgabiH97|016290 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.7E-13 96 209
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.3E-07 475 519
PF00665 rve Integrase core domain 9.0E-14 534 630
AgabiH97|016480 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.0E-13 96 209
PF00665 rve Integrase core domain 1.6E-13 534 630
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.0E-67 910 1155
AgabiH97|016500 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.3E-36 94 190
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.2E-37 122 224
PF17921 Integrase_H2C2 Integrase zinc binding domain 7.6E-19 340 394
PF00665 rve Integrase core domain 1.0E-10 412 508
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.2E-09 708 757
AgabiH97|018050 PF00665 rve Integrase core domain 6.0E-08 253 354
AgabiH97|020610 PF13650 Asp_protease_2 Aspartyl protease 1.1E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.2E-07 27 117
PF08284 RVP_2 Retroviral aspartyl protease 1.0E-08 34 131
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.5E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.3E-19 724 780
PF00665 rve Integrase core domain 9.3E-12 798 894
AgabiH97|020970 PF13976 gag_pre-integrs GAG-pre-integrase domain 2.2E-08 236 285
PF00665 rve Integrase core domain 3.0E-14 299 396
AgabiH97|025360 PF00665 rve Integrase core domain 4.2E-08 44 144
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-42 470 629
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.1E-08 633 691
AgabiH97|025550 PF00665 rve Integrase core domain 4.2E-12 24 121
AgabiH97|025640 PF17921 Integrase_H2C2 Integrase zinc binding domain 3.3E-20 27 83
PF00665 rve Integrase core domain 1.6E-12 101 197
AgabiH97|025700 PF00665 rve Integrase core domain 5.3E-08 12 105
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.5E-14 306 355
AgabiH97|027890 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.0E-07 78 189
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.9E-08 1026 1076
PF00665 rve Integrase core domain 8.8E-13 1090 1187
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-65 1610 1841
AgabiH97|028980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.5E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 6.4E-08 456 524
PF00665 rve Integrase core domain 4.7E-14 542 635
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-15 914 966
AgabiH97|032380 PF13650 Asp_protease_2 Aspartyl protease 1.3E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 8.4E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 2.4E-09 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.0E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.9E-37 441 537
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.8E-38 469 571
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.2E-19 685 741
PF00665 rve Integrase core domain 1.0E-10 759 855
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.1E-09 1055 1104
AgabiH97|035360 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 6.4E-13 89 206
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.7E-12 514 586
PF00665 rve Integrase core domain 2.1E-08 600 700
AgabiH97|036540 PF00665 rve Integrase core domain 3.9E-08 10 109
AgabiH97|036620 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.8E-10 281 348
PF00665 rve Integrase core domain 6.3E-08 362 462
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.1E-64 783 1026
AgabiH97|036730 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.1E-10 281 348
PF00665 rve Integrase core domain 5.4E-08 362 462
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.2E-64 786 1029
AgabiH97|036980 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-12 77 193
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.1E-11 460 534
PF00665 rve Integrase core domain 1.1E-09 549 648
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.2E-52 934 1173
AgabiH97|039240 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.1E-08 113 223
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.4E-07 741 785
PF00665 rve Integrase core domain 1.9E-10 801 896
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.4E-67 1320 1555
AgabiH97|039690 PF13650 Asp_protease_2 Aspartyl protease 4.0E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 5.3E-07 27 117
PF08284 RVP_2 Retroviral aspartyl protease 1.5E-08 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 7.7E-19 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.4E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 3.0E-19 724 780
PF00665 rve Integrase core domain 6.4E-11 798 894
AgabiH97|039840 PF00665 rve Integrase core domain 2.0E-13 25 121
AgabiH97|039900 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.3E-07 81 188
PF13976 gag_pre-integrs GAG-pre-integrase domain 2.8E-08 1027 1077
PF00665 rve Integrase core domain 3.3E-13 1091 1188
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.8E-65 1611 1842
AgabiH97|040830 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.0E-13 96 209
PF00665 rve Integrase core domain 1.6E-13 534 630
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 9.0E-67 910 1155
AgabiH97|041130 PF17921 Integrase_H2C2 Integrase zinc binding domain 1.4E-19 80 136
PF00665 rve Integrase core domain 3.8E-12 154 250
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.1E-09 450 499
AgabiH97|044800 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.2E-37 133 229
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.1E-38 161 263
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.6E-19 377 433
PF00665 rve Integrase core domain 4.1E-12 451 547
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.3E-09 747 796
AgabiH97|045050 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.2E-11 92 159
PF00665 rve Integrase core domain 6.7E-08 173 273
AgabiH97|048890 PF13650 Asp_protease_2 Aspartyl protease 1.3E-06 25 115
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 8.2E-08 27 117
PF08284 RVP_2 Retroviral aspartyl protease 4.4E-09 34 133
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-18 255 414
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.0E-37 480 576
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.9E-38 508 610
PF17921 Integrase_H2C2 Integrase zinc binding domain 4.0E-19 724 780
PF00665 rve Integrase core domain 1.2E-11 798 894
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.3E-09 1094 1143
AgabiH97|050360 PF17921 Integrase_H2C2 Integrase zinc binding domain 2.1E-19 119 175
PF00665 rve Integrase core domain 4.0E-12 193 289
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 7.9E-10 489 538
AgabiH97|050950 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.2E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 4.7E-08 435 503
PF00665 rve Integrase core domain 3.3E-14 521 614
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 5.3E-68 893 1137
AgabiH97|051280 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.8E-08 98 167
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.4E-08 427 495
PF00665 rve Integrase core domain 1.7E-14 512 606
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.4E-66 883 1128
AgabiH97|059870 PF00665 rve Integrase core domain 1.7E-12 25 121
AgabiH97|059920 PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.3E-37 133 229
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.2E-29 161 244
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.6E-19 328 384
PF00665 rve Integrase core domain 7.8E-12 402 498
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.1E-07 698 735
AgabiH97|060150 PF00665 rve Integrase core domain 1.0E-08 38 138
AgabiH97|060580 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.1E-06 16 116
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.1E-07 640 684
PF00665 rve Integrase core domain 2.2E-10 700 795
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.2E-65 1219 1454
AgabiH97|076160 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 4.3E-08 2 113
PF13976 gag_pre-integrs GAG-pre-integrase domain 7.9E-09 672 715
PF00665 rve Integrase core domain 6.1E-11 731 824
AgabiH97|078550 PF17921 Integrase_H2C2 Integrase zinc binding domain 1.5E-19 119 175
PF00665 rve Integrase core domain 4.0E-12 193 289
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.2E-09 489 538
AgabiH97|078610 PF17921 Integrase_H2C2 Integrase zinc binding domain 2.9E-19 119 175
PF00665 rve Integrase core domain 5.1E-12 193 289
AgabiH97|079510 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.6E-11 72 199
PF13976 gag_pre-integrs GAG-pre-integrase domain 9.2E-08 583 632
PF00665 rve Integrase core domain 1.7E-13 645 743
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.8E-69 1142 1378
AgabiH97|081930 PF00665 rve Integrase core domain 1.2E-08 15 115
AgabiH97|082280 PF00665 rve Integrase core domain 4.1E-11 25 121
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.6E-07 321 370
AgabiH97|082350 PF00665 rve Integrase core domain 4.1E-11 25 121
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.0E-10 321 370
AgabiH97|084900 PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-18 212 371
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 7.6E-38 437 533
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 8.2E-39 465 567
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.9E-19 681 737
PF00665 rve Integrase core domain 5.9E-12 755 851
AgabiH97|089860 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.3E-16 98 208
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.9E-08 456 524
PF00665 rve Integrase core domain 5.3E-14 541 635
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 3.3E-68 914 1158
AgabiH97|094000 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.8E-11 218 285
PF00665 rve Integrase core domain 4.9E-08 299 399
AgabiH97|094040 PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 4.1E-44 23 190
PF13976 gag_pre-integrs GAG-pre-integrase domain 5.3E-10 521 588
PF00665 rve Integrase core domain 5.6E-08 602 702
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.7E-64 1026 1269
AgabiH97|094150 PF00665 rve Integrase core domain 6.3E-09 44 144
AgabiH97|096660 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-15 112 245
PF00098 zf-CCHC Zinc knuckle 2.7E-04 295 311
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-13 475 534
PF00665 rve Integrase core domain 5.3E-12 550 648
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-63 926 1163
AgabiH97|105000 PF00665 rve Integrase core domain 7.3E-09 136 237
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 7.1E-25 525 631
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 8.2E-10 643 746
AgabiH97|106710 PF13976 gag_pre-integrs GAG-pre-integrase domain 1.0E-09 285 352
PF00665 rve Integrase core domain 6.4E-08 366 466
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 2.2E-64 790 1033
AgabiH97|107910 PF17921 Integrase_H2C2 Integrase zinc binding domain 9.1E-18 119 175
PF00665 rve Integrase core domain 3.6E-13 192 289
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.1E-09 489 538
AgabiH97|117660 PF00665 rve Integrase core domain 2.1E-10 5 81
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.0E-10 281 330
AgabiH97|118090 PF13976 gag_pre-integrs GAG-pre-integrase domain 4.4E-11 49 116
PF00665 rve Integrase core domain 2.2E-08 130 230
AgabiH97|118430 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-07 145 216
PF00098 zf-CCHC Zinc knuckle 1.3E-03 295 311
PF00098 zf-CCHC Zinc knuckle 4.1E-04 323 338
PF13650 Asp_protease_2 Aspartyl protease 1.8E-06 379 469
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.2E-07 381 471
PF08284 RVP_2 Retroviral aspartyl protease 5.4E-09 388 487
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-18 609 768
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-36 834 930
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.6E-38 862 964
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-19 1078 1134
PF00665 rve Integrase core domain 4.4E-10 1152 1248
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.7E-09 1448 1497

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