Fungal Genomics

at Utrecht University

PFAM Domain

General information

PFAM domainPF00098
Short namezf-CCHC
Long nameZinc knuckle
Proteins with at least one of this domain126
Total domain count164
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|001790 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|007400 PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3.4E-05 94 113
PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4.0E-05 120 144
PF00098 zf-CCHC Zinc knuckle 5.0E-04 254 269
PF01894 UPF0047 Uncharacterised protein family UPF0047 2.0E-37 315 431
AgabiH97|009380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-13 88 150
PF13917 zf-CCHC_3 Zinc knuckle 5.2E-06 165 195
PF00098 zf-CCHC Zinc knuckle 3.1E-08 169 185
AgabiH97|012390 PF03732 Retrotrans_gag Retrotransposon gag protein 3.4E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.9E-04 327 342
AgabiH97|012430 PF03732 Retrotrans_gag Retrotransposon gag protein 3.4E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.9E-04 327 342
AgabiH97|012720 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-08 144 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|012770 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 144 216
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|012860 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|012930 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|012950 PF00098 zf-CCHC Zinc knuckle 2.0E-06 152 167
AgabiH97|013020 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|013060 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|013150 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|013190 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|013420 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|016310 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|016330 PF00098 zf-CCHC Zinc knuckle 2.1E-05 281 296
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-24 833 994
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.3E-30 1057 1157
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-33 1083 1188
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.7E-20 1302 1360
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1674 1723
AgabiH97|016520 PF03732 Retrotrans_gag Retrotransposon gag protein 4.7E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|017950 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-08 141 215
PF00098 zf-CCHC Zinc knuckle 7.0E-04 295 309
AgabiH97|018080 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-06 105 192
PF00098 zf-CCHC Zinc knuckle 3.1E-06 278 293
AgabiH97|018370 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|019420 PF03732 Retrotrans_gag Retrotransposon gag protein 2.2E-05 12 78
PF00098 zf-CCHC Zinc knuckle 1.8E-06 164 179
AgabiH97|019460 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|020520 PF00098 zf-CCHC Zinc knuckle 9.1E-07 78 93
AgabiH97|020600 PF03732 Retrotrans_gag Retrotransposon gag protein 6.8E-06 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|023430 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|023940 PF03732 Retrotrans_gag Retrotransposon gag protein 9.0E-06 106 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|023960 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|025090 PF00098 zf-CCHC Zinc knuckle 9.2E-07 287 304
PF00098 zf-CCHC Zinc knuckle 6.6E-04 310 324
AgabiH97|025680 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|026120 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|027190 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|027800 PF03732 Retrotrans_gag Retrotransposon gag protein 3.3E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|028590 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|028990 PF00098 zf-CCHC Zinc knuckle 1.8E-05 281 296
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.0E-24 833 994
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.9E-30 1057 1157
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.9E-33 1083 1188
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.6E-20 1302 1360
AgabiH97|031160 PF00098 zf-CCHC Zinc knuckle 5.1E-05 59 75
AgabiH97|032360 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|032390 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 1.4E-03 323 338
AgabiH97|035270 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|035300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|035320 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|035350 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|039100 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|039220 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|039290 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 109 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 282 297
AgabiH97|039300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.2E-05 93 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|039440 PF01751 Toprim Toprim domain 2.8E-18 3 146
PF01131 Topoisom_bac DNA topoisomerase 7.4E-106 162 579
PF06839 zf-GRF GRF zinc finger 6.7E-12 809 852
PF00098 zf-CCHC Zinc knuckle 3.2E-05 874 890
PF13917 zf-CCHC_3 Zinc knuckle 1.4E-01 875 900
PF00098 zf-CCHC Zinc knuckle 3.6E-04 918 933
PF13917 zf-CCHC_3 Zinc knuckle 1.5E-01 944 972
PF00098 zf-CCHC Zinc knuckle 1.9E-04 948 964
AgabiH97|039860 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|040730 PF03732 Retrotrans_gag Retrotransposon gag protein 7.4E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|041140 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-06 136 199
PF00098 zf-CCHC Zinc knuckle 3.6E-04 306 321
PF13650 Asp_protease_2 Aspartyl protease 7.8E-07 362 452
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 3.3E-08 364 454
PF08284 RVP_2 Retroviral aspartyl protease 2.1E-09 371 469
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 9.3E-11 645 730
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.6E-37 796 892
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 7.6E-38 824 926
AgabiH97|048810 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|048850 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.3E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|048900 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.3E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|050280 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050300 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050340 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050800 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|050810 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-05 49 136
PF00098 zf-CCHC Zinc knuckle 2.9E-06 222 237
AgabiH97|051060 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|051170 PF03732 Retrotrans_gag Retrotransposon gag protein 2.7E-07 156 222
PF00098 zf-CCHC Zinc knuckle 1.9E-07 303 320
PF00098 zf-CCHC Zinc knuckle 1.9E-04 326 341
AgabiH97|053050 PF00098 zf-CCHC Zinc knuckle 5.1E-05 34 51
PF14392 zf-CCHC_4 Zinc knuckle 2.4E-02 34 51
PF00098 zf-CCHC Zinc knuckle 1.8E-08 56 72
PF14392 zf-CCHC_4 Zinc knuckle 1.0E+00 57 71
PF13917 zf-CCHC_3 Zinc knuckle 2.4E-02 74 95
PF00098 zf-CCHC Zinc knuckle 7.6E-08 77 94
PF14392 zf-CCHC_4 Zinc knuckle 5.1E+00 78 93
PF13917 zf-CCHC_3 Zinc knuckle 2.9E-01 113 135
PF00098 zf-CCHC Zinc knuckle 1.0E-06 116 132
PF14392 zf-CCHC_4 Zinc knuckle 2.4E+00 117 131
PF00098 zf-CCHC Zinc knuckle 5.5E-07 145 162
PF14392 zf-CCHC_4 Zinc knuckle 1.8E+00 146 161
PF13917 zf-CCHC_3 Zinc knuckle 2.7E-01 164 189
PF00098 zf-CCHC Zinc knuckle 1.8E-07 165 181
PF13917 zf-CCHC_3 Zinc knuckle 1.0E-02 183 202
PF00098 zf-CCHC Zinc knuckle 1.2E-06 186 201
AgabiH97|056220 PF13696 zf-CCHC_2 Zinc knuckle 3.7E-10 370 389
PF00098 zf-CCHC Zinc knuckle 4.2E-03 375 390
PF04677 CwfJ_C_1 Protein similar to CwfJ C-terminus 1 2.2E-28 440 573
PF04676 CwfJ_C_2 Protein similar to CwfJ C-terminus 2 9.2E-12 603 670
AgabiH97|059840 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-08 144 216
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|059910 PF00098 zf-CCHC Zinc knuckle 1.6E-04 37 51
PF00098 zf-CCHC Zinc knuckle 3.3E-06 65 80
AgabiH97|060080 PF00098 zf-CCHC Zinc knuckle 1.8E-03 17 31
PF00098 zf-CCHC Zinc knuckle 2.5E-05 45 60
AgabiH97|060300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|062760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 1.0E-05 282 296
AgabiH97|064000 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|066160 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|066750 PF03732 Retrotrans_gag Retrotransposon gag protein 1.2E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|072660 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-13 83 145
PF00098 zf-CCHC Zinc knuckle 3.0E-08 164 180
AgabiH97|073080 PF00098 zf-CCHC Zinc knuckle 5.8E-04 343 356
AgabiH97|073220 PF00098 zf-CCHC Zinc knuckle 3.6E-05 9 24
PF14392 zf-CCHC_4 Zinc knuckle 9.5E-01 10 24
PF14392 zf-CCHC_4 Zinc knuckle 1.4E-01 27 44
PF00098 zf-CCHC Zinc knuckle 1.9E-03 29 45
PF00098 zf-CCHC Zinc knuckle 6.6E-06 53 69
PF14392 zf-CCHC_4 Zinc knuckle 1.8E-01 54 68
PF00098 zf-CCHC Zinc knuckle 8.1E-07 78 95
PF14392 zf-CCHC_4 Zinc knuckle 9.7E-02 80 94
PF00098 zf-CCHC Zinc knuckle 5.1E-06 123 137
PF14392 zf-CCHC_4 Zinc knuckle 9.2E+00 124 138
PF00098 zf-CCHC Zinc knuckle 5.9E-09 159 176
AgabiH97|075560 PF00098 zf-CCHC Zinc knuckle 2.0E-06 193 209
PF08284 RVP_2 Retroviral aspartyl protease 4.8E-05 340 444
AgabiH97|076090 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-08 142 213
PF00098 zf-CCHC Zinc knuckle 5.9E-03 293 307
PF00098 zf-CCHC Zinc knuckle 1.2E-05 321 336
AgabiH97|076200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.8E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|077350 PF03732 Retrotrans_gag Retrotransposon gag protein 1.3E-05 75 162
PF00098 zf-CCHC Zinc knuckle 2.8E-06 248 263
AgabiH97|078540 PF03732 Retrotrans_gag Retrotransposon gag protein 3.8E-08 144 215
PF00098 zf-CCHC Zinc knuckle 3.8E-06 323 338
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.5E-31 809 896
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.8E-20 837 896
AgabiH97|078580 PF03732 Retrotrans_gag Retrotransposon gag protein 2.1E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|078590 PF03732 Retrotrans_gag Retrotransposon gag protein 2.2E-07 68 134
PF00098 zf-CCHC Zinc knuckle 1.1E-05 215 232
PF00098 zf-CCHC Zinc knuckle 1.3E-04 238 253
AgabiH97|078630 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-05 104 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|079520 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|081760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|082300 PF03732 Retrotrans_gag Retrotransposon gag protein 3.5E-08 145 215
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|082330 PF03732 Retrotrans_gag Retrotransposon gag protein 8.9E-08 143 214
PF00098 zf-CCHC Zinc knuckle 7.7E-04 294 308
PF00098 zf-CCHC Zinc knuckle 2.0E-03 322 337
AgabiH97|082480 PF03732 Retrotrans_gag Retrotransposon gag protein 1.2E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.0E-05 281 296
AgabiH97|083540 PF16275 SF1-HH Splicing factor 1 helix-hairpin domain 9.2E-39 79 186
PF00013 KH_1 KH domain 5.1E-05 209 279
PF00098 zf-CCHC Zinc knuckle 1.3E-04 317 333
PF00098 zf-CCHC Zinc knuckle 1.2E-05 342 357
AgabiH97|084890 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-07 156 222
PF00098 zf-CCHC Zinc knuckle 9.7E-07 303 320
PF00098 zf-CCHC Zinc knuckle 1.9E-04 326 341
AgabiH97|085020 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|087610 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|089440 PF03732 Retrotrans_gag Retrotransposon gag protein 5.3E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|089900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|092280 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|092670 PF08783 DWNN DWNN domain 1.1E-30 5 78
PF13696 zf-CCHC_2 Zinc knuckle 1.5E-10 207 227
PF00098 zf-CCHC Zinc knuckle 1.1E-05 211 226
AgabiH97|094270 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-07 146 213
PF00098 zf-CCHC Zinc knuckle 9.4E-07 294 311
AgabiH97|096320 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|096660 PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-15 112 245
PF00098 zf-CCHC Zinc knuckle 2.7E-04 295 311
PF13976 gag_pre-integrs GAG-pre-integrase domain 8.3E-13 475 534
PF00665 rve Integrase core domain 5.3E-12 550 648
PF07727 RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-63 926 1163
AgabiH97|097630 PF00098 zf-CCHC Zinc knuckle 2.2E-05 381 396
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-24 934 1094
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 6.1E-30 1158 1258
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.4E-33 1185 1289
PF17921 Integrase_H2C2 Integrase zinc binding domain 9.7E-20 1403 1461
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 6.1E-13 1775 1824
AgabiH97|097690 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|097970 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-05 20 107
PF00098 zf-CCHC Zinc knuckle 2.1E-06 193 208
AgabiH97|097990 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|098730 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-08 144 215
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|100680 PF03732 Retrotrans_gag Retrotransposon gag protein 1.3E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|100700 PF03732 Retrotrans_gag Retrotransposon gag protein 1.7E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|100760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|100790 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|107040 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|107900 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|108090 PF03732 Retrotrans_gag Retrotransposon gag protein 7.8E-09 144 215
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH97|108250 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.2E-04 326 342
AgabiH97|110120 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH97|110170 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH97|110190 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.0E-06 281 296
AgabiH97|110250 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 109 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 282 297
AgabiH97|113100 PF03732 Retrotrans_gag Retrotransposon gag protein 4.8E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|113130 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|113150 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH97|117620 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-08 144 215
PF00098 zf-CCHC Zinc knuckle 3.8E-04 295 309
AgabiH97|117650 PF00098 zf-CCHC Zinc knuckle 2.0E-05 262 277
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.6E-24 790 951
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.1E-29 1014 1114
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 3.8E-33 1040 1145
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.5E-20 1259 1317
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 8.9E-13 1631 1680
AgabiH97|117810 PF00098 zf-CCHC Zinc knuckle 2.0E-05 281 296
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.6E-24 809 970
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.7E-30 1033 1133
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 8.5E-33 1059 1164
PF17921 Integrase_H2C2 Integrase zinc binding domain 9.0E-20 1278 1336
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1626 1675
AgabiH97|118180 PF00098 zf-CCHC Zinc knuckle 4.5E-04 59 75
AgabiH97|118430 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-07 145 216
PF00098 zf-CCHC Zinc knuckle 1.3E-03 295 311
PF00098 zf-CCHC Zinc knuckle 4.1E-04 323 338
PF13650 Asp_protease_2 Aspartyl protease 1.8E-06 379 469
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 1.2E-07 381 471
PF08284 RVP_2 Retroviral aspartyl protease 5.4E-09 388 487
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 1.3E-18 609 768
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 1.8E-36 834 930
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.6E-38 862 964
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.4E-19 1078 1134
PF00665 rve Integrase core domain 4.4E-10 1152 1248
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.7E-09 1448 1497
AgabiH97|119510 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-06 101 188
PF00098 zf-CCHC Zinc knuckle 3.1E-06 274 289
AgabiH97|119570 PF00098 zf-CCHC Zinc knuckle 1.8E-05 262 277
AgabiH97|119640 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH97|119660 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 102 189
PF00098 zf-CCHC Zinc knuckle 3.1E-06 275 290

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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