Fungal Genomics

at Utrecht University

PFAM Domain

General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain63
Total domain count95
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|000770 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-02 49 155
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-08 69 138
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-07 217 291
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-13 220 282
AgabiH97|001040 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-16 98 165
AgabiH97|003100 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-08 215 289
AgabiH97|003280 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-05 62 123
AgabiH97|005290 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-11 138 202
AgabiH97|006160 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-08 197 268
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-19 301 371
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 1.7E-14 390 452
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-08 466 511
AgabiH97|008460 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-05 10 97
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.3E-16 18 89
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-18 109 179
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-13 234 298
AgabiH97|009380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-13 88 150
PF13917 zf-CCHC_3 Zinc knuckle 5.2E-06 165 195
PF00098 zf-CCHC Zinc knuckle 3.1E-08 169 185
AgabiH97|016850 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-11 538 599
AgabiH97|019820 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 9.5E-43 37 158
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-17 219 285
AgabiH97|030650 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-17 66 138
AgabiH97|030720 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-13 20 81
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.0E-15 242 307
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-13 442 500
PF09334 tRNA-synt_1g tRNA synthetases class I (M) 3.1E-83 930 1304
PF00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V) 9.1E-12 1167 1281
PF19303 Anticodon_3 Anticodon binding domain of methionyl tRNA ligase 4.7E-06 1345 1433
AgabiH97|034430 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-16 80 137
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-06 174 239
AgabiH97|035130 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-08 4 77
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-16 231 301
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-08 415 478
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-08 530 606
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-15 634 702
AgabiH97|035410 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-13 5 75
AgabiH97|035700 PF05383 La La domain 9.5E-23 30 87
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.7E-07 133 177
PF08777 RRM_3 RNA binding motif 9.2E-06 280 362
AgabiH97|044310 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.5E-24 5 75
AgabiH97|045880 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-04 130 200
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-06 301 355
AgabiH97|048400 PF03435 Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain 1.7E-15 8 125
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-10 757 811
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-07 980 1035
AgabiH97|056130 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.9E-16 5 66
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-11 99 163
AgabiH97|056600 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-08 7 67
AgabiH97|056830 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-01 57 151
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-15 75 144
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-19 163 231
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.5E-19 256 324
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-01 257 332
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-20 359 427
PF00658 PABP Poly-adenylate binding protein, unique domain 1.0E-24 629 694
AgabiH97|057080 PF16367 RRM_7 RNA recognition motif 3.5E-09 10 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-15 11 87
AgabiH97|059430 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-06 126 197
PF01424 R3H R3H domain 3.5E-10 309 367
AgabiH97|060870 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-05 108 162
PF01585 G-patch G-patch domain 1.9E-13 638 679
AgabiH97|060980 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-09 459 511
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-12 583 644
PF00806 PUF Pumilio-family RNA binding repeat 5.3E-01 827 849
PF00806 PUF Pumilio-family RNA binding repeat 6.7E-01 862 888
PF00806 PUF Pumilio-family RNA binding repeat 2.3E-02 905 929
AgabiH97|061940 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-11 36 111
AgabiH97|062270 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.3E-13 14 84
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-17 101 171
AgabiH97|066640 PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5.1E-27 61 209
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-15 288 357
AgabiH97|066680 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-07 312 360
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.6E-16 529 593
AgabiH97|068040 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.6E-06 729 786
AgabiH97|068210 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-10 112 187
AgabiH97|068280 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.2E-12 34 80
AgabiH97|069680 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-15 88 154
AgabiH97|069880 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-08 14 98
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.5E-19 18 84
AgabiH97|070650 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-14 160 229
AgabiH97|072080 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-16 27 95
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-11 218 290
AgabiH97|072200 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-18 310 379
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-16 410 479
AgabiH97|072660 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-13 83 145
PF00098 zf-CCHC Zinc knuckle 3.0E-08 164 180
AgabiH97|073380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-09 9 80
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-07 170 238
AgabiH97|073450 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-05 97 128
AgabiH97|075150 PF05365 UCR_UQCRX_QCR9 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like 5.2E-26 6 57
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-11 79 148
AgabiH97|075240 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-16 83 152
AgabiH97|077630 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-14 119 173
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-15 201 251
AgabiH97|080330 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.1E-05 115 186
AgabiH97|081280 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-15 220 289
AgabiH97|081610 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 7.0E-24 5 107
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-18 118 186
AgabiH97|082510 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-12 75 139
AgabiH97|086520 PF16131 Torus Torus domain 4.9E-38 32 139
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-05 176 229
AgabiH97|093100 PF07576 BRAP2 BRCA1-associated protein 2 2.4E-26 56 140
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-05 63 123
PF13639 zf-RING_2 Ring finger domain 5.4E-09 164 205
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 9.3E-05 165 204
PF13445 zf-RING_UBOX RING-type zinc-finger 1.2E-05 165 202
PF02148 zf-UBP Zn-finger in ubiquitin-hydrolases and other protein 2.6E-19 239 298
AgabiH97|093740 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-15 315 384
AgabiH97|095380 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-13 63 131
AgabiH97|102510 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.8E-09 633 694
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-11 707 769
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-15 798 865
AgabiH97|109030 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.9E-11 169 237
AgabiH97|109350 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-11 125 192
AgabiH97|110570 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-13 60 122
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-20 210 279
AgabiH97|110910 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 3.2E-29 19 135
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-06 355 406
AgabiH97|111210 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-14 70 138
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 3.2E-07 166 213
AgabiH97|111610 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.4E-07 27 91
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-09 121 184
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-21 271 339
AgabiH97|111660 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-11 57 125
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 1.7E-06 180 214
AgabiH97|112420 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-13 188 255
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.6E-16 310 378
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-14 472 539
AgabiH97|115990 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-19 5 75
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 2.8E-29 123 202
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 1.3E-11 302 335
AgabiH97|116350 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.5E-09 459 522
PF11764 N-SET COMPASS (Complex proteins associated with Set1p) component N 4.4E-08 1359 1432
PF00856 SET SET domain 1.5E-18 1479 1583

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