Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain43
Total domain count52
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH97|001870 PF06068 TIP49 TIP49 P-loop domain 7.4E-157 20 362
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-05 72 121
PF17856 TIP49_C TIP49 AAA-lid domain 8.0E-22 368 433
AgabiH97|003250 PF13173 AAA_14 AAA domain 6.6E-07 56 152
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-12 57 173
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.5E-08 96 176
PF08542 Rep_fac_C Replication factor C C-terminal domain 9.0E-23 242 328
AgabiH97|003600 PF06068 TIP49 TIP49 P-loop domain 3.7E-153 29 383
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.7E-07 53 106
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-07 81 134
PF17856 TIP49_C TIP49 AAA-lid domain 3.7E-19 389 454
AgabiH97|006450 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 2.3E-13 110 160
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.4E-13 218 354
PF17871 AAA_lid_9 AAA lid domain 1.5E-32 362 462
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.1E-47 618 783
PF00158 Sigma54_activat Sigma-54 interaction domain 8.9E-07 621 739
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.9E-08 623 749
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-09 624 742
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 3.2E-21 789 869
AgabiH97|009750 PF06480 FtsH_ext FtsH Extracellular 1.4E-11 133 230
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.4E-43 333 465
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-12 491 537
PF01434 Peptidase_M41 Peptidase family M41 9.0E-62 552 735
AgabiH97|013660 PF04212 MIT MIT (microtubule interacting and transport) domain 1.3E-21 7 72
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-40 165 294
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.5E-05 165 233
PF17862 AAA_lid_3 AAA+ lid domain 3.2E-07 319 351
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 3.4E-26 372 432
AgabiH97|015820 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.5E-05 68 123
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.7E-06 180 251
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-43 181 314
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 5.3E-08 181 292
PF17862 AAA_lid_3 AAA+ lid domain 7.2E-11 338 380
AgabiH97|031760 PF08740 BCS1_N BCS1 N terminal 5.7E-14 50 219
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.8E-05 254 314
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-15 255 373
AgabiH97|034500 PF08740 BCS1_N BCS1 N terminal 1.5E-32 41 224
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-16 260 389
AgabiH97|034510 PF08740 BCS1_N BCS1 N terminal 1.2E-34 23 210
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-16 246 387
AgabiH97|035500 PF09811 Yae1_N Essential protein Yae1, N terminal 3.6E-09 29 68
PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 6.0E-09 115 332
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-20 588 727
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.0E-11 588 723
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 2.6E-15 833 918
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 7.1E-44 948 1058
AgabiH97|038840 PF08740 BCS1_N BCS1 N terminal 9.8E-43 29 214
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-06 250 316
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-05 344 403
AgabiH97|040530 PF13401 AAA_22 AAA domain 6.8E-12 187 288
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-07 189 309
AgabiH97|043410 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 2.8E-23 117 193
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.9E-10 433 573
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-43 714 840
PF17862 AAA_lid_3 AAA+ lid domain 2.5E-10 867 904
AgabiH97|045450 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.2E-17 124 243
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.8E-15 157 263
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.2E-05 157 255
PF00158 Sigma54_activat Sigma-54 interaction domain 2.8E-04 211 258
PF16193 AAA_assoc_2 AAA C-terminal domain 6.9E-18 303 374
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 2.8E-58 375 526
AgabiH97|054170 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-04 1331 1409
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-10 1331 1450
AgabiH97|054410 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.5E-14 272 365
AgabiH97|055840 PF08740 BCS1_N BCS1 N terminal 2.0E-46 41 216
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-18 252 372
AgabiH97|056910 PF01426 BAH BAH domain 5.7E-11 105 263
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-14 489 641
PF17872 AAA_lid_10 AAA lid domain 5.6E-06 679 714
PF00400 WD40 WD domain, G-beta repeat 1.1E-01 1291 1321
AgabiH97|057360 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-42 369 498
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-08 521 564
PF01434 Peptidase_M41 Peptidase family M41 1.5E-56 580 757
AgabiH97|058110 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.5E-36 733 865
PF17862 AAA_lid_3 AAA+ lid domain 6.1E-08 888 923
AgabiH97|059610 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.6E-41 250 382
AgabiH97|060670 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-12 454 586
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-45 719 852
AgabiH97|061580 PF03215 Rad17 Rad17 P-loop domain 6.6E-08 21 166
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.9E-09 42 193
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.3E-15 61 190
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.8E-10 292 357
AgabiH97|061950 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 6.0E-11 83 138
PF05673 DUF815 Protein of unknown function (DUF815) 5.7E-06 159 261
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.3E-08 195 317
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.1E-44 196 329
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.3E-07 196 289
AgabiH97|067790 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-39 334 474
PF17862 AAA_lid_3 AAA+ lid domain 6.6E-07 501 546
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.6E-12 615 743
AgabiH97|069030 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 1.2E-12 213 288
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-09 391 509
PF08519 RFC1 Replication factor RFC1 C terminal domain 1.6E-51 668 823
AgabiH97|070280 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-20 229 346
AgabiH97|074840 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.7E-37 137 368
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.7E-05 139 216
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-14 140 268
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.1E-08 389 445
AgabiH97|075430 PF13401 AAA_22 AAA domain 3.3E-06 169 270
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-30 171 316
AgabiH97|077480 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-41 396 531
PF17862 AAA_lid_3 AAA+ lid domain 4.0E-09 564 602
AgabiH97|083050 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.9E-10 115 169
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-41 228 361
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-10 383 425
AgabiH97|085600 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.2E-10 29 184
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.1E-05 37 178
AgabiH97|087780 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 9.2E-34 784 1033
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-20 1184 1320
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.7E-07 1184 1317
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 5.1E-67 1483 1692
AgabiH97|090000 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-10 85 185
PF17871 AAA_lid_9 AAA lid domain 1.2E-31 224 321
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.3E-46 482 650
PF00158 Sigma54_activat Sigma-54 interaction domain 1.1E-05 485 597
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.0E-11 487 598
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.1E-07 488 606
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 7.8E-19 656 736
AgabiH97|090250 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 4.5E-16 29 109
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 3.7E-11 130 194
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-46 245 374
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.3E-06 245 340
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.4E-05 245 363
PF17862 AAA_lid_3 AAA+ lid domain 8.7E-13 397 436
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-46 518 651
PF17862 AAA_lid_3 AAA+ lid domain 1.8E-11 674 714
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 5.2E-05 717 769
AgabiH97|090500 PF08740 BCS1_N BCS1 N terminal 2.6E-43 27 211
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.6E-14 247 389
AgabiH97|091600 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.5E-10 68 123
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.6E-06 180 301
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.9E-42 181 314
PF17862 AAA_lid_3 AAA+ lid domain 3.8E-10 337 379
AgabiH97|092120 PF03215 Rad17 Rad17 P-loop domain 8.7E-08 31 104
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.6E-10 53 190
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.7E-18 70 188
PF08542 Rep_fac_C Replication factor C C-terminal domain 4.9E-19 255 340
AgabiH97|097840 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-43 291 426
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.8E-06 291 415
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-09 450 485
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-39 566 697
PF17862 AAA_lid_3 AAA+ lid domain 3.8E-10 720 764
AgabiH97|100130 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.4E-06 121 190
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-38 122 250
PF17862 AAA_lid_3 AAA+ lid domain 1.1E-08 273 309
AgabiH97|101780 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 5.5E-18 111 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-39 244 376
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-11 398 440
AgabiH97|110270 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-43 147 279
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 4.5E-07 147 269
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-08 303 341
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-46 509 638
PF17862 AAA_lid_3 AAA+ lid domain 1.8E-10 686 720

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail