Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|536300
Gene name
Locationscaffold_12b:1403911..1405130
Strand-
Gene length (bp)1219
Transcript length (bp)843
Coding sequence length (bp)843
Protein length (aa) 281

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05008 V-SNARE Vesicle transport v-SNARE protein N-terminus 7.8E-21 86 164
PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 7.0E-13 212 269

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 79 270 6.0E-27
sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 76 275 9.0E-22
sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2 79 275 4.0E-21
sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 79 275 5.0E-21
sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1 79 275 8.0E-21
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Swissprot ID Swissprot Description Start End E-value
sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 79 270 6.0E-27
sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 76 275 9.0E-22
sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2 79 275 4.0E-21
sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 79 275 5.0E-21
sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1 79 275 8.0E-21
sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2 78 275 3.0E-19
sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3 82 273 6.0E-17
sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1 78 268 7.0E-16
sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3 76 275 8.0E-16
sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2 79 271 3.0E-07
sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3 107 271 7.0E-07
sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1 79 271 7.0E-07
sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1 107 271 8.0E-07
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GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0006886 intracellular protein transport Yes
GO:0009987 cellular process No
GO:0033036 macromolecule localization No
GO:0008150 biological_process No
GO:0110165 cellular anatomical entity No
GO:0046907 intracellular transport No
GO:0051649 establishment of localization in cell No
GO:0051641 cellular localization No
GO:0070727 cellular macromolecule localization No
GO:0005575 cellular_component No
GO:0071705 nitrogen compound transport No
GO:0045184 establishment of protein localization No
GO:0006810 transport No
GO:0008104 protein localization No
GO:0051234 establishment of localization No
GO:0051179 localization No
GO:0071702 organic substance transport No
GO:0015031 protein transport No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup1147
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|073970
Agaricus bisporus var bisporus H39 AgabiH39|536300 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|033530
Agaricus bisporus var bisporus H97 AgabiH97|073970
Rhodonia placenta FPRL280 RhoplFPRL280|97_18

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|536300
MLSLPMTILEPDHKFSQDFVAPLKSQLSGTSVQIEVRRETTRLMTDYFAGDVVDPICIFLIMPATTTSTKMEQPP
TQLFELYEADFKVLLSNIKDKLDGNGKDLPGEQKKAALRKVEIALDEADDIISQLEIEIQGIPASIRSQYTTRLR
QAKTELTRYRKASKESHTQLARFDLLGGSKTRAGLPTSDDPYGEGSDRTRLLAGTNTLDDGTRRLTDSTRIALET
ETQGADILRGLRGQREQIENARDTLHGADISIDRSSSRIQTMIRQANKQRADSVF*
Coding >AgabiH39|536300
ATGCTATCACTGCCCATGACTATTCTAGAGCCAGACCATAAATTCAGCCAAGATTTCGTCGCACCTCTGAAGAGC
CAGCTCTCTGGCACAAGTGTCCAAATTGAGGTGAGGAGGGAGACGACGCGGTTGATGACGGATTATTTCGCGGGC
GATGTGGTGGACCCTATCTGCATCTTTTTGATCATGCCAGCGACGACCACGTCAACCAAGATGGAGCAGCCGCCC
ACCCAATTGTTCGAGTTGTACGAGGCAGATTTCAAAGTTCTTCTGTCGAATATCAAGGACAAGTTGGACGGCAAT
GGCAAAGACTTGCCCGGAGAACAGAAGAAAGCTGCTTTGAGGAAGGTTGAGATCGCGCTGGATGAAGCAGATGAT
ATCATATCCCAGCTCGAAATCGAGATTCAAGGCATACCTGCCTCAATCCGTAGCCAATATACCACAAGACTCCGA
CAGGCAAAGACAGAACTAACCCGATATAGGAAAGCCTCGAAGGAGTCACATACCCAGCTTGCTCGTTTTGACCTC
TTGGGTGGTTCAAAAACTCGCGCCGGCCTTCCTACTTCTGACGATCCATACGGTGAAGGGAGTGACAGAACAAGG
CTGCTCGCAGGAACAAACACGCTCGACGACGGAACTCGGCGACTGACGGACTCGACAAGAATAGCGTTAGAGACA
GAGACGCAGGGTGCGGACATACTACGAGGCCTTCGTGGCCAGAGAGAGCAAATTGAAAATGCTCGCGATACGCTG
CATGGTGCGGACATAAGTATTGATAGGTCATCGTCAAGGATTCAAACAATGATTCGACAGGCGAACAAGCAACGG
GCTGATTCTGTATTTTAA
Transcript >AgabiH39|536300
ATGCTATCACTGCCCATGACTATTCTAGAGCCAGACCATAAATTCAGCCAAGATTTCGTCGCACCTCTGAAGAGC
CAGCTCTCTGGCACAAGTGTCCAAATTGAGGTGAGGAGGGAGACGACGCGGTTGATGACGGATTATTTCGCGGGC
GATGTGGTGGACCCTATCTGCATCTTTTTGATCATGCCAGCGACGACCACGTCAACCAAGATGGAGCAGCCGCCC
ACCCAATTGTTCGAGTTGTACGAGGCAGATTTCAAAGTTCTTCTGTCGAATATCAAGGACAAGTTGGACGGCAAT
GGCAAAGACTTGCCCGGAGAACAGAAGAAAGCTGCTTTGAGGAAGGTTGAGATCGCGCTGGATGAAGCAGATGAT
ATCATATCCCAGCTCGAAATCGAGATTCAAGGCATACCTGCCTCAATCCGTAGCCAATATACCACAAGACTCCGA
CAGGCAAAGACAGAACTAACCCGATATAGGAAAGCCTCGAAGGAGTCACATACCCAGCTTGCTCGTTTTGACCTC
TTGGGTGGTTCAAAAACTCGCGCCGGCCTTCCTACTTCTGACGATCCATACGGTGAAGGGAGTGACAGAACAAGG
CTGCTCGCAGGAACAAACACGCTCGACGACGGAACTCGGCGACTGACGGACTCGACAAGAATAGCGTTAGAGACA
GAGACGCAGGGTGCGGACATACTACGAGGCCTTCGTGGCCAGAGAGAGCAAATTGAAAATGCTCGCGATACGCTG
CATGGTGCGGACATAAGTATTGATAGGTCATCGTCAAGGATTCAAACAATGATTCGACAGGCGAACAAGCAACGG
GCTGATTCTGTATTTTAA
Gene >AgabiH39|536300
ATGCTATCACTGCCCATGACTATTCTAGAGTGAGTCATTCGTTTCCTTGTGGTGCCCGTATCGGTTGAGCCGCTT
CCAAAAGGCCAGACCATAAATTCAGCCAAGATTTCGTCGCACCTCTGAAGAGCCAGCTCTCTGGCACAAGTGTCC
AAATTGAGGTGAGGAGGGAGACGACGCGGTTGATGACGGATTATTTCGCGGGCGATGTGGTGGACCCTATCTGCA
TCTTTTTGATCATGGTGTGACGGATGATGTCACTCTGTTGGTTGCACTGCGGTGCCTGAGAAGCGTCAACGCAGC
CAGCGACGACCACGTCAACCAAGATGGAGCAGCCGCCCACCCAATTGTTCGAGTTGTACGAGGCAGATTTCAAAG
TTCTTCTGTCGAATATCAAGGACAAGTTGGACGGCAATGGCAAAGACTTGCCCGGAGGTATGTTCACCCCAGCCA
CTGTCACGGTGCCGAGTCTCATATCTACCCACCACAAGAACAGAAGAAAGCTGCTTTGAGGAAGGTTGAGATCGC
GCTGGATGAAGCAGATGATATCGTGCGTACATTTCCCTTTCCTCGTCCCCAAGTTAGTTCATATTTGTGCAGATA
TCCCAGCTCGAAATCGAGATTCAAGGCATACCTGCCTCAATCCGTAGCCAATATACCACAAGACTCCGACAGGCA
AAGACAGAACTAACCCGATATAGGAAAGCCTCGAAGGAGTCACATACCCAGCTTGCTCGTTTTGACCTCTTGGGT
GGTTCAAAAACTCGCGCCGGCCTTCCTACTTCTGACGATCCATACGGTGAAGGGAGTGACAGAACAAGGCTGCTC
GCAGGAACAAACACGCTCGACGACGGAACTCGGCGACTGACGGACTCGACAAGAATAGCGTTAGAGACAGAGACG
CAGGGTGCGGACATACTACGAGGCCTTCGTGGCCAGAGAGAGCAAATTGAAAATGCTCGCGATACGGTAAGCCAC
TCGCGTTAATTGCATGTTGCCACTGAGACTTATTCACAAAAACAGCTGCATGGTGCGGACATAAGTATTGATAGG
TCATCGTCAAGGATTCAAACAATGATTCGACAGTAAGGGGCACTACTCCTATTGACGTATCAACTTTTTTTTCTG
ATGACCTCGGAAACAGGGCGAACAAGCAACGGTATATATATATACTAATCGGGTTGTTTTTTGCTGTGCTTGTAG
GGCTGATTCTGTATTTTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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