Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|479900
Gene name
Locationscaffold_10:1368997..1369337
Strand+
Gene length (bp)340
Transcript length (bp)291
Coding sequence length (bp)291
Protein length (aa) 97

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup1245
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|019720
Agaricus bisporus var bisporus H39 AgabiH39|019730
Agaricus bisporus var bisporus H39 AgabiH39|019740
Agaricus bisporus var bisporus H39 AgabiH39|019750
Agaricus bisporus var bisporus H39 AgabiH39|019950
Agaricus bisporus var bisporus H39 AgabiH39|020020
Agaricus bisporus var bisporus H39 AgabiH39|479900 (this protein)
Agaricus bisporus var bisporus H39 AgabiH39|539400
Agaricus bisporus var bisporus H97 AgabiH97|019720
Agaricus bisporus var bisporus H97 AgabiH97|019730
Agaricus bisporus var bisporus H97 AgabiH97|019740
Agaricus bisporus var bisporus H97 AgabiH97|019750
Agaricus bisporus var bisporus H97 AgabiH97|019950
Agaricus bisporus var bisporus H97 AgabiH97|020020
Agaricus bisporus var bisporus H97 AgabiH97|020210
Agaricus bisporus var bisporus H97 AgabiH97|034710

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|479900
MQLAKRIVVDSAMMYTVSSLSAFISLICPVSVAIDITCLAEAQIIGIAFNLILIRPWSPNQDHESESYVRGEKLK
ANRAMVSVAVGTTNSLVDDIP*
Coding >AgabiH39|479900
ATGCAACTTGCCAAACGCATAGTTGTCGACTCCGCTATGATGTACACCGTGTCATCTTTGAGTGCCTTTATCAGC
CTTATTTGCCCAGTGAGCGTCGCAATTGACATTACATGTCTAGCAGAAGCTCAAATTATCGGAATTGCCTTTAAT
TTGATACTTATCAGACCCTGGTCTCCAAACCAGGACCATGAAAGCGAATCATACGTCAGAGGTGAAAAACTGAAG
GCGAACCGCGCGATGGTTAGCGTGGCGGTAGGAACCACGAACTCGTTGGTTGATGATATACCGTAA
Transcript >AgabiH39|479900
ATGCAACTTGCCAAACGCATAGTTGTCGACTCCGCTATGATGTACACCGTGTCATCTTTGAGTGCCTTTATCAGC
CTTATTTGCCCAGTGAGCGTCGCAATTGACATTACATGTCTAGCAGAAGCTCAAATTATCGGAATTGCCTTTAAT
TTGATACTTATCAGACCCTGGTCTCCAAACCAGGACCATGAAAGCGAATCATACGTCAGAGGTGAAAAACTGAAG
GCGAACCGCGCGATGGTTAGCGTGGCGGTAGGAACCACGAACTCGTTGGTTGATGATATACCGTAA
Gene >AgabiH39|479900
ATGCAACTTGCCAAACGCATAGTTGTCGACTCCGCTATGATGTACACCGTGTCATCTTTGAGTGCCTTTATCAGC
CTTATTTGCCCAGTGAGCGTCGCAATTGACATTACATGTCTAGCAGTAAGTTACTCGACTTTAGGACCGATTACT
TTCTTACTATGTTAAGCAGGAAGCTCAAATTATCGGAATTGCCTTTAATTTGATACTTATCAGACCCTGGTCTCC
AAACCAGGACCATGAAAGCGAATCATACGTCAGAGGTGAAAAACTGAAGGCGAACCGCGCGATGGTTAGCGTGGC
GGTAGGAACCACGAACTCGTTGGTTGATGATATACCGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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