Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|274400
Gene name
Locationscaffold_02:3079097..3079785
Strand-
Gene length (bp)688
Transcript length (bp)444
Coding sequence length (bp)444
Protein length (aa) 148

Overview

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P83811|CAP_COPCM Antiviral protein CAP (Fragment) OS=Coprinus comatus PE=1 SV=1 54 142 6.0E-06

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

SignalP signal predicted Location Score
Yes 1 - 34 0.999584

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup9593
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|051900
Agaricus bisporus var bisporus H39 AgabiH39|274400 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|051900
Agaricus bisporus var bisporus H97 AgabiH97|051910

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|274400
MLKGSQEPLVQLNYLTMYFKAYLVASTLIAVAAAQDSVTCLQGPPTAAGPATDCTPFVDEFCDEVGLVDMRNNNP
ITRCFELPNDNVCNFGVYNTLMVDIAPSVVNCKAILTSAISQCKLGGFGRAPVAFTVEVVNHAKCGTLHIGF*
Coding >AgabiH39|274400
ATGCTCAAGGGATCGCAAGAACCTCTCGTGCAACTCAACTACCTCACAATGTATTTCAAAGCCTACCTCGTTGCA
TCGACTCTCATCGCCGTTGCAGCGGCTCAAGATAGTGTTACCTGTCTCCAAGGTCCACCCACTGCTGCGGGCCCT
GCCACTGACTGCACCCCATTTGTGGACGAATTTTGCGACGAGGTTGGTTTGGTCGATATGCGTAACAATAATCCA
ATCACTCGCTGCTTCGAGTTACCGAATGACAATGTTTGCAATTTTGGGGTATATAATACATTAATGGTTGATATC
GCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAGTGCTATCTCTCAATGCAAATTGGGTGGTTTTGGAAGG
GCTCCCGTTGCGTTCACGGTTGAAGTTGTTAACCATGCAAAATGCGGCACTCTGCATATTGGGTTCTAA
Transcript >AgabiH39|274400
ATGCTCAAGGGATCGCAAGAACCTCTCGTGCAACTCAACTACCTCACAATGTATTTCAAAGCCTACCTCGTTGCA
TCGACTCTCATCGCCGTTGCAGCGGCTCAAGATAGTGTTACCTGTCTCCAAGGTCCACCCACTGCTGCGGGCCCT
GCCACTGACTGCACCCCATTTGTGGACGAATTTTGCGACGAGGTTGGTTTGGTCGATATGCGTAACAATAATCCA
ATCACTCGCTGCTTCGAGTTACCGAATGACAATGTTTGCAATTTTGGGGTATATAATACATTAATGGTTGATATC
GCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAGTGCTATCTCTCAATGCAAATTGGGTGGTTTTGGAAGG
GCTCCCGTTGCGTTCACGGTTGAAGTTGTTAACCATGCAAAATGCGGCACTCTGCATATTGGGTTCTAA
Gene >AgabiH39|274400
ATGCTCAAGGGATCGCAAGAACCTCTCGTGCAACTCAACTACCTCACAATGTATTTCAAAGCCGTACGTCCACGA
TGATGATGTGGAATTTCGATCAACTGACTGGGTACATCTGTAGTACCTCGTTGCATCGACTCTCATCGCCGTTGC
AGCGGCTCAAGATAGTGTTACCTGTCTCCAAGGTCCACCCACTGCTGCGGGCCCTGCCACTGACTGCACCCCATT
TGTGGACGAATTTTGCGACGAGGTTGGTTTGGTCGATGTAAGTACTACCAAGTCAGCACTGTTCCTCGAAACTGA
CCAGCGAATTTACCCATGTTCCCAAAGATGCGTAACAATAATCCAATCACTCGCTGCTTCGAGTTACCGAATGAC
AATGTTTGTGAGTAGTATTCTTGGTGGTTCTACCCTCAGTAGTATCGGCTACTCATGGCGCATATCATGATAGGC
AATTTTGGGGTATATAATACATTAATGGTTGATATCGCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAGT
GCTATCTCTCAATGCAAATTGGTAAAATTCGTGTATATTCGAATCATCATACTGAAAATTTGCTGATGACGAAAT
CCAGGGTGGTTTTGGAAGGGCTCCCGTTGCGTTCACGGTTGAAGTTGTTAACCATGCAAAATGCGGCACTCTGCA
TATTGGGTTCTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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