© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH39|110010 |
| Gene name | |
| Location | scaffold_08:1248551..1250077 |
| Strand | - |
| Gene length (bp) | 1526 |
| Transcript length (bp) | 933 |
| Coding sequence length (bp) | 933 |
| Protein length (aa) | 311 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01183 | Glyco_hydro_25 | Glycosyl hydrolases family 25 | 5.6E-55 | 112 | 291 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25310|LYSM1_STRGL | Lysozyme M1 OS=Streptomyces globisporus GN=acm PE=1 SV=1 | 110 | 307 | 7.0E-72 |
| sp|P00721|LYS_CHASP | N,O-diacetylmuramidase OS=Chalaropsis sp. PE=1 SV=1 | 110 | 309 | 9.0E-64 |
| sp|D4ANU4|LYS_ARTBC | N,O-diacetylmuramidase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05911 PE=1 SV=1 | 110 | 309 | 1.0E-63 |
| sp|Q8FFY2|YEGX_ECOL6 | Uncharacterized protein YegX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yegX PE=3 SV=2 | 111 | 309 | 1.0E-21 |
| sp|P26836|LYS_CLOPE | Probable autolytic lysozyme OS=Clostridium perfringens (strain 13 / Type A) GN=lyc PE=3 SV=2 | 110 | 291 | 6.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25310|LYSM1_STRGL | Lysozyme M1 OS=Streptomyces globisporus GN=acm PE=1 SV=1 | 110 | 307 | 7.0E-72 |
| sp|P00721|LYS_CHASP | N,O-diacetylmuramidase OS=Chalaropsis sp. PE=1 SV=1 | 110 | 309 | 9.0E-64 |
| sp|D4ANU4|LYS_ARTBC | N,O-diacetylmuramidase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05911 PE=1 SV=1 | 110 | 309 | 1.0E-63 |
| sp|Q8FFY2|YEGX_ECOL6 | Uncharacterized protein YegX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yegX PE=3 SV=2 | 111 | 309 | 1.0E-21 |
| sp|P26836|LYS_CLOPE | Probable autolytic lysozyme OS=Clostridium perfringens (strain 13 / Type A) GN=lyc PE=3 SV=2 | 110 | 291 | 6.0E-21 |
| sp|P76421|YEGX_ECOLI | Uncharacterized protein YegX OS=Escherichia coli (strain K12) GN=yegX PE=3 SV=2 | 111 | 309 | 6.0E-21 |
| sp|Q8X7H0|YEGX_ECO57 | Uncharacterized protein YegX OS=Escherichia coli O157:H7 GN=yegX PE=3 SV=2 | 111 | 309 | 3.0E-20 |
| sp|P34020|LYS_CLOAB | Autolytic lysozyme OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=lyc PE=1 SV=1 | 110 | 297 | 5.0E-18 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016998 | cell wall macromolecule catabolic process | Yes |
| GO:0009253 | peptidoglycan catabolic process | Yes |
| GO:0003796 | lysozyme activity | Yes |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:0000270 | peptidoglycan metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0009056 | catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:1901136 | carbohydrate derivative catabolic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0030203 | glycosaminoglycan metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044036 | cell wall macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0006027 | glycosaminoglycan catabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0061783 | peptidoglycan muralytic activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006026 | aminoglycan catabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0006022 | aminoglycan metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH39|110010 MMDLKVHDMLGHVHDDDDQFTEKDCICINFLTSQTHHKANLTHHFNCSSLRSTTVSALRSLSDDYPDNNSQVSKK RAVGQNHHSILEDTMKLFALLVLALPAIVSAAPPKGIDVSHWQGSINWGSVRANGVEFVYIKATESTNFKDPKFS ANYVGATNAGLIRGAYHFARPGASSGAAQANYFASNGGGWSGDGITLPGALDLEAGCSGLSHSAMTAWIRDFSNT YHARTGRYPVIYTTTSWWKQCTGNASGFQNNNPLWIARWSSSVGELPAGYAYHTFWQYADKGPNPGDQDNFNGDS AGLKRLARGS* |
| Coding | >AgabiH39|110010 ATGATGGACTTGAAAGTTCATGACATGTTGGGCCATGTGCATGATGATGATGATCAATTCACCGAGAAGGACTGT ATATGTATCAATTTTTTAACATCACAGACGCATCATAAAGCAAACTTGACTCACCATTTCAATTGCAGTTCATTA CGGTCGACAACGGTGTCAGCCCTGCGCTCACTGTCAGATGACTACCCGGACAACAATTCACAGGTCTCAAAAAAG AGAGCTGTGGGGCAGAATCATCATTCCATTCTTGAAGATACCATGAAGCTTTTTGCTCTTCTCGTTCTTGCTCTT CCCGCCATCGTCTCTGCTGCCCCGCCAAAGGGCATAGACGTATCTCATTGGCAAGGGTCCATTAACTGGGGATCA GTCAGGGCAAATGGTGTAGAATTCGTCTACATCAAGGCTACGGAGAGCACCAATTTCAAAGACCCGAAGTTCAGC GCAAATTACGTTGGTGCAACGAATGCGGGGCTCATACGGGGTGCCTATCATTTCGCTCGTCCCGGGGCCTCTTCG GGTGCGGCGCAAGCCAATTACTTCGCCTCTAATGGGGGTGGTTGGAGTGGCGACGGGATCACACTTCCTGGTGCT CTTGATCTCGAAGCTGGATGCTCTGGTCTCAGTCATTCTGCGATGACAGCATGGATCAGAGATTTCTCCAACACC TATCACGCCAGGACCGGTCGCTATCCGGTAATCTACACGACCACTAGCTGGTGGAAGCAATGCACTGGAAACGCC AGCGGTTTCCAAAACAATAATCCCCTTTGGATTGCCCGCTGGTCTTCAAGTGTGGGTGAACTCCCTGCCGGATAC GCTTATCATACCTTCTGGCAGTACGCCGACAAGGGTCCTAACCCAGGTGATCAGGACAATTTCAACGGTGATTCT GCTGGGCTCAAACGCTTGGCTAGAGGATCTTGA |
| Transcript | >AgabiH39|110010 ATGATGGACTTGAAAGTTCATGACATGTTGGGCCATGTGCATGATGATGATGATCAATTCACCGAGAAGGACTGT ATATGTATCAATTTTTTAACATCACAGACGCATCATAAAGCAAACTTGACTCACCATTTCAATTGCAGTTCATTA CGGTCGACAACGGTGTCAGCCCTGCGCTCACTGTCAGATGACTACCCGGACAACAATTCACAGGTCTCAAAAAAG AGAGCTGTGGGGCAGAATCATCATTCCATTCTTGAAGATACCATGAAGCTTTTTGCTCTTCTCGTTCTTGCTCTT CCCGCCATCGTCTCTGCTGCCCCGCCAAAGGGCATAGACGTATCTCATTGGCAAGGGTCCATTAACTGGGGATCA GTCAGGGCAAATGGTGTAGAATTCGTCTACATCAAGGCTACGGAGAGCACCAATTTCAAAGACCCGAAGTTCAGC GCAAATTACGTTGGTGCAACGAATGCGGGGCTCATACGGGGTGCCTATCATTTCGCTCGTCCCGGGGCCTCTTCG GGTGCGGCGCAAGCCAATTACTTCGCCTCTAATGGGGGTGGTTGGAGTGGCGACGGGATCACACTTCCTGGTGCT CTTGATCTCGAAGCTGGATGCTCTGGTCTCAGTCATTCTGCGATGACAGCATGGATCAGAGATTTCTCCAACACC TATCACGCCAGGACCGGTCGCTATCCGGTAATCTACACGACCACTAGCTGGTGGAAGCAATGCACTGGAAACGCC AGCGGTTTCCAAAACAATAATCCCCTTTGGATTGCCCGCTGGTCTTCAAGTGTGGGTGAACTCCCTGCCGGATAC GCTTATCATACCTTCTGGCAGTACGCCGACAAGGGTCCTAACCCAGGTGATCAGGACAATTTCAACGGTGATTCT GCTGGGCTCAAACGCTTGGCTAGAGGATCTTGA |
| Gene | >AgabiH39|110010 ATGATGGACTTGAAAGTTCATGACATGTTGGGCCATGTGCATGATGATGATGATCAATTCACCGAGAAGGACTGT ATATGTATCAATTTTGTCAAAATCATCAATACGCTTTCGCACTAGATCGACCTCAAATCCACTAGCTACAAAAAC TACGTAATAGTTAACATCACAGACGGTAAGCATTTGGTAAGCATTGCACTAGAAGTCTCTAATTAGTCGCTCTTA GCATCATAAAGCAAACTTGACTCACCATTTCAATTGCAGTTCATTACGTCTGTCCACCTCGAAACCTTGGAAAGT TGCCTTTTTCTTGACGTAGCCATGCCAATAGGGTCGACAACGGTGTCAGGTTCAATCACGGCCACTTCGGTTTAG TACCAAAATGTTATCGCTCAATGTGTTACCACACACATAGCCCTGCGCTCACTGTCAGATGACTACCCGGACAAC AATTCACAGGTCTCAAAAAAGGTTCGTTACGACACTCTAGACCCAGTGACCAAAGCTTTAAAAAGAGAAGAGAGC TGTGGGGCAGAATCATCATTCCATTCTTGAAGATACCATGAAGCTTTTTGCTCTTCTCGTTCTTGCTCTTCCCGC CATCGTCTCTGCTGCCCCGCCAAAGGGCATAGACGTATCTCATTGGCAAGGGTCCATTAACTGGGGATCAGTCAG GGCAAATGGTGTAGAATTCGTCTACATCAAGGCTACGGAGAGCACCAGTGCGTAATCATGTCTGGCATGGATTTG GTCAGTTTAATAAACATTCATCGTTATTTAGATTTCAAAGACCCGAAGTTCAGCGCAAATTACGTGTAAGTCACT CGTCTCTATTTACTTATCACTACAATAACGGAAAACCAGTGGTGCAACGAATGCGGGGCTCATACGGGGTGCCTA TCATTTCGCTCGTCCCGGGGCCTCTTCGGGTGCGGCGCAAGCCAATTACTTCGCCTCTAATGGGGGTGGTTGGAG TGGCGACGGGATCACACTTCCTGGTGCTCTTGATCTCGAAGGTCAGTACTTAATCTGGATTCCTTTTGATTTTCT GCTCAATGATCAAACTGACAACCCTCATGACGCAGCTGGATGCTCTGGTCTCAGTCATTCTGCGATGACAGCATG GATCAGAGATTTCTCCAACACCTATCACGCCAGGACCGGTCGCTATCCGGTAATCTACACGACCACTAGCTGGTG GAAGCAATGCACTGGAAACGCCAGCGGTTTCCAAAACAATAATCCCCTTTGGATTGCCCGCTGGTCTTCAAGTGT GGGTGAACTCCCTGCCGGATACGCGTAAGTGATATTTTTTTACTTTTCTCCCGCAAGGGTTCGACTTTGACCTTG GATTGATCTATGCATTTCAGTTATCATACCTTCTGGCAGTACGCCGACAAGGGTCCTAACCCAGGTGATCAGGAC AATTTCAACGGTGATTCTGCTGGGCTCAAACGGTAAGCCAATATTCATACTTGGTTTGGAATCGGTTCTGAGTCT ACAATAGCTTGGCTAGAGGATCTTGA |