Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|094390
Gene name
Locationscaffold_06b:72797..73972
Strand+
Gene length (bp)1175
Transcript length (bp)1098
Coding sequence length (bp)1098
Protein length (aa) 366

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 5.1E-10 1 44
PF00646 F-box F-box domain 1.6E-04 3 33

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup6875
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|094390 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|094390
Rhodonia placenta FPRL280 RhoplFPRL280|61_18

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|094390
MPSLPNEILAAIFSRLEPATLAQLTTVSRRLNAVAEYHLYSLISFTDVLTDALHVPQRTVSWCHAMLNRPHLVDA
VKRLHIRWTTEYHSPPTPLLLAVCDQLSLVIRSCVGLEYLDLFLGPANFASLPRENMHAIERAVFLCSLPALRYC
SLGADYAKGIQPYTAHIVSFLSHTPSLQHLRLADHHASLNLPPGSHVLPLLHTFRGSAATAATILPGRPVRYLSL
VGQDSDVTQENLLRMASTSTPLRSLDLSAISARPVLLRNVSSYLPTLERLRIRLALRHTLHYALSGISLLVGLSS
VLSKFPNLVYLDLSPTLEGGRANPADERVLCTEYGRACPSIRTIVFPSQAEWSLDNEGQWCMAEF*
Coding >AgabiH39|094390
ATGCCTTCTCTTCCCAACGAAATCCTTGCTGCCATCTTTTCCCGTCTCGAGCCTGCGACCCTCGCCCAGCTCACC
ACCGTCTCCCGCCGTCTCAACGCTGTTGCAGAGTATCATCTCTATTCGCTAATCTCCTTTACTGATGTCCTCACC
GACGCACTCCATGTCCCCCAGCGGACCGTCTCCTGGTGCCATGCCATGCTCAACAGACCCCATCTCGTGGACGCC
GTCAAACGCCTCCACATCCGCTGGACAACAGAGTACCATTCTCCTCCTACTCCCCTCCTCCTCGCAGTGTGCGAC
CAGCTTTCTCTTGTCATCCGCAGTTGCGTCGGTCTAGAATACCTTGACCTGTTCCTCGGCCCCGCAAACTTCGCC
TCACTGCCGAGAGAGAACATGCATGCCATTGAACGTGCCGTCTTTCTTTGTTCTCTCCCAGCCCTTCGTTATTGC
TCCCTCGGTGCAGATTACGCGAAAGGCATCCAGCCATACACCGCACACATCGTCTCTTTTCTCTCGCACACTCCC
TCCCTTCAACATCTCCGCCTTGCAGATCATCATGCCTCTCTCAACCTCCCCCCAGGCTCGCATGTCCTTCCCCTC
CTTCACACATTTCGTGGATCTGCTGCCACTGCCGCCACCATCCTCCCTGGGCGTCCTGTCCGCTATCTTTCTCTC
GTTGGTCAAGACTCAGACGTCACACAAGAGAATCTATTGCGCATGGCATCAACCTCTACCCCCCTCCGATCCCTA
GACTTATCCGCCATCTCTGCACGACCTGTTCTTTTGCGCAATGTGTCCTCTTATCTGCCCACCCTTGAACGCCTG
CGTATAAGGCTCGCTCTACGCCATACCCTCCACTATGCCCTTTCCGGTATTAGTTTACTTGTTGGTCTTTCCTCC
GTCCTCAGCAAGTTTCCGAATCTGGTCTACCTCGATCTGTCACCTACGTTAGAAGGTGGCCGTGCCAATCCAGCA
GATGAGAGGGTACTGTGCACAGAGTATGGCCGAGCATGTCCTTCCATCAGGACCATAGTCTTTCCCTCGCAGGCA
GAGTGGTCTCTCGACAATGAGGGTCAGTGGTGCATGGCCGAATTCTGA
Transcript >AgabiH39|094390
ATGCCTTCTCTTCCCAACGAAATCCTTGCTGCCATCTTTTCCCGTCTCGAGCCTGCGACCCTCGCCCAGCTCACC
ACCGTCTCCCGCCGTCTCAACGCTGTTGCAGAGTATCATCTCTATTCGCTAATCTCCTTTACTGATGTCCTCACC
GACGCACTCCATGTCCCCCAGCGGACCGTCTCCTGGTGCCATGCCATGCTCAACAGACCCCATCTCGTGGACGCC
GTCAAACGCCTCCACATCCGCTGGACAACAGAGTACCATTCTCCTCCTACTCCCCTCCTCCTCGCAGTGTGCGAC
CAGCTTTCTCTTGTCATCCGCAGTTGCGTCGGTCTAGAATACCTTGACCTGTTCCTCGGCCCCGCAAACTTCGCC
TCACTGCCGAGAGAGAACATGCATGCCATTGAACGTGCCGTCTTTCTTTGTTCTCTCCCAGCCCTTCGTTATTGC
TCCCTCGGTGCAGATTACGCGAAAGGCATCCAGCCATACACCGCACACATCGTCTCTTTTCTCTCGCACACTCCC
TCCCTTCAACATCTCCGCCTTGCAGATCATCATGCCTCTCTCAACCTCCCCCCAGGCTCGCATGTCCTTCCCCTC
CTTCACACATTTCGTGGATCTGCTGCCACTGCCGCCACCATCCTCCCTGGGCGTCCTGTCCGCTATCTTTCTCTC
GTTGGTCAAGACTCAGACGTCACACAAGAGAATCTATTGCGCATGGCATCAACCTCTACCCCCCTCCGATCCCTA
GACTTATCCGCCATCTCTGCACGACCTGTTCTTTTGCGCAATGTGTCCTCTTATCTGCCCACCCTTGAACGCCTG
CGTATAAGGCTCGCTCTACGCCATACCCTCCACTATGCCCTTTCCGGTATTAGTTTACTTGTTGGTCTTTCCTCC
GTCCTCAGCAAGTTTCCGAATCTGGTCTACCTCGATCTGTCACCTACGTTAGAAGGTGGCCGTGCCAATCCAGCA
GATGAGAGGGTACTGTGCACAGAGTATGGCCGAGCATGTCCTTCCATCAGGACCATAGTCTTTCCCTCGCAGGCA
GAGTGGTCTCTCGACAATGAGGGTCAGTGGTGCATGGCCGAATTCTGA
Gene >AgabiH39|094390
ATGCCTTCTCTTCCCAACGAAATCCTTGCTGCCATCTTTTCCCGTCTCGAGCCTGCGACCCTCGCCCAGCTCACC
ACCGTCTCCCGCCGTCTCAACGCTGTTGCAGAGTATCATCTCTATTCGCTAATCTCCTTTACTGATGTCCTCACC
GACGCACTCCATGTCCCCCAGCGGACCGTCTCCTGGTGCCATGCCATGCTCAACAGACCCCATCTCGTGGACGCC
GTCAAACGCCTCCACATCCGCTGGACAACAGAGTACCATTCTCCTCCTACTCCCCTCCTCCTCGCAGTGTGCGAC
CAGCTTTCTCTTGTCATCCGCAGTTGCGTCGGTCTAGAATACCTTGACCTGTTCCTCGGCCCCGCAAACTTCGCC
TCACTGCCGAGAGAGAACATGCATGCCATTGAACGTGCCGTCTTTCTTTGTTCTCTCCCAGCCCTTCGTTATTGC
TCCCTCGGTGCAGATTACGCGAAAGGCATCCAGCCATACACCGCACACATCGTCTCTTTTCTCTCGCACACTCCC
TCCCTTCAACATCTCCGCCTTGCAGATCATCATGCCTCTCTCAACCTCCCCCCAGGCTCGCATGTCCTTCCCCTC
CTTCACACATTTCGTGGATCTGCTGCCACTGCCGCCACCATCCTCCCTGGGCGTCCTGTCCGCTATCTTTCTCTC
GTTGGTCAAGACTCAGACGTCACACAAGAGAATCTATTGCGCATGGCATCAACCTCTACCCCCCTCCGATCCCTA
GACTTATCCGCCATCTCTGCACGACCTGTTCTTTTGCGCAATGTGTCCTCTTATCTGCCCACCCTTGAACGCCTG
CGTATAAGGCTCGCTCTACGCCATACCCTCCACTATGCCCTTTCCGGTATTGTGAGTACCGCTCTTTCTCTATCT
AATATATAAATAGATTTTGCATGCCATTGCTCATTATGATTGTACAACGACAGAGTTTACTTGTTGGTCTTTCCT
CCGTCCTCAGCAAGTTTCCGAATCTGGTCTACCTCGATCTGTCACCTACGTTAGAAGGTGGCCGTGCCAATCCAG
CAGATGAGAGGGTACTGTGCACAGAGTATGGCCGAGCATGTCCTTCCATCAGGACCATAGTCTTTCCCTCGCAGG
CAGAGTGGTCTCTCGACAATGAGGGTCAGTGGTGCATGGCCGAATTCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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