© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH39|081430 |
| Gene name | |
| Location | scaffold_05:807666..808993 |
| Strand | + |
| Gene length (bp) | 1327 |
| Transcript length (bp) | 1068 |
| Coding sequence length (bp) | 1068 |
| Protein length (aa) | 356 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02492 | cobW | CobW/HypB/UreG, nucleotide-binding domain | 1.2E-38 | 6 | 181 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74310|YOG5_SCHPO | COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1 | 3 | 189 | 2.0E-20 |
| sp|P94400|YCIC_BACSU | Putative metal chaperone YciC OS=Bacillus subtilis (strain 168) GN=yciC PE=2 SV=1 | 5 | 205 | 1.0E-16 |
| sp|P29937|COBW_PSEDE | Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3 | 5 | 200 | 1.0E-15 |
| sp|P33030|YEIR_ECOLI | Zinc-binding GTPase YeiR OS=Escherichia coli (strain K12) GN=yeiR PE=1 SV=2 | 8 | 334 | 2.0E-15 |
| sp|Q99MB4|CBWD1_RAT | COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2 | 5 | 178 | 6.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74310|YOG5_SCHPO | COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1 | 3 | 189 | 2.0E-20 |
| sp|P94400|YCIC_BACSU | Putative metal chaperone YciC OS=Bacillus subtilis (strain 168) GN=yciC PE=2 SV=1 | 5 | 205 | 1.0E-16 |
| sp|P29937|COBW_PSEDE | Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3 | 5 | 200 | 1.0E-15 |
| sp|P33030|YEIR_ECOLI | Zinc-binding GTPase YeiR OS=Escherichia coli (strain K12) GN=yeiR PE=1 SV=2 | 8 | 334 | 2.0E-15 |
| sp|Q99MB4|CBWD1_RAT | COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2 | 5 | 178 | 6.0E-15 |
| sp|Q8VEH6|CBWD1_MOUSE | COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=1 SV=1 | 5 | 244 | 7.0E-15 |
| sp|Q869Q0|Y4527_DICDI | COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1 | 3 | 175 | 2.0E-14 |
| sp|P24203|YJIA_ECOLI | Uncharacterized GTP-binding protein YjiA OS=Escherichia coli (strain K12) GN=yjiA PE=1 SV=3 | 3 | 158 | 3.0E-14 |
| sp|Q9HZQ2|COBW_PSEAE | Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1 | 5 | 152 | 3.0E-14 |
| sp|P31521|P47K_PSECL | 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1 | 5 | 212 | 3.0E-13 |
| sp|Q8IUF1|CBWD2_HUMAN | COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1 | 5 | 200 | 3.0E-13 |
| sp|Q9BRT8|CBWD1_HUMAN | COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1 | 5 | 200 | 4.0E-13 |
| sp|Q4V339|CBWD6_HUMAN | COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=3 SV=1 | 5 | 200 | 5.0E-13 |
| sp|Q5JTY5|CBWD3_HUMAN | COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1 | 5 | 200 | 9.0E-13 |
| sp|P53729|YN8H_YEAST | Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1 | 5 | 177 | 2.0E-12 |
| sp|Q5RIA9|CBWD5_HUMAN | COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1 | 5 | 200 | 3.0E-12 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH39|081430 MPDAIPITVFTGFLGAGKTSVILSLLPKLPPGYKAVLLKNEFGDLEVDSKLANESSLAGVSEILNGCMCCVLVGQ MQTALLEIRDKYRPDRILIECSGSAFPATLAFQIREIERQTASDLKLDSIVTVIDAENFIGYEDQSPTARMQASY TDIILINKWEHVSERQLDEVIDHLNTLNDTTPKIKCQGRNGVDPALIFGLQTQLFLKSLSTSGETDAMHHDEVET VTLYSGGIFERPLHHSDSCHHEHSASEGLSHTGKELEHKILIKALQALSKENIWRVKGFVRLIKEDSEASTIHIL NWAFGRYELSAVRSENGSQYLGEGEVVRLTVMGERGEVARAARRLAEEIGASVGG* |
| Coding | >AgabiH39|081430 ATGCCCGACGCCATCCCGATCACCGTCTTCACTGGCTTTCTGGGCGCAGGGAAGACCTCCGTCATCCTCTCTCTT CTCCCTAAGCTACCCCCGGGCTACAAGGCTGTCTTGCTCAAGAATGAGTTTGGCGATCTCGAAGTCGACAGCAAG CTCGCGAACGAGTCAAGCCTCGCCGGTGTCAGTGAAATCCTCAACGGCTGCATGTGCTGTGTGCTGGTGGGCCAG ATGCAGACAGCCCTCCTAGAAATTCGAGACAAGTACCGTCCAGATCGTATCCTAATCGAGTGCTCCGGTTCTGCG TTCCCAGCAACGCTTGCATTTCAAATCAGAGAGATCGAAAGGCAGACGGCCAGTGACCTCAAACTCGATTCCATC GTCACCGTCATCGATGCGGAAAACTTTATTGGCTACGAAGACCAATCCCCTACTGCACGTATGCAGGCCTCATAT ACGGACATCATTCTCATAAACAAATGGGAACATGTGTCCGAACGTCAACTCGATGAGGTTATTGACCATTTGAAC ACACTCAACGACACTACTCCGAAAATCAAATGTCAAGGCCGCAACGGTGTCGATCCCGCTCTGATTTTCGGCCTC CAGACCCAGTTGTTCCTCAAGTCTTTGTCAACGTCAGGAGAAACCGACGCCATGCACCACGACGAAGTAGAAACA GTAACATTATACAGCGGTGGCATCTTTGAGAGACCTCTGCACCATTCAGACTCTTGCCACCATGAACACAGTGCT TCCGAGGGCCTTTCTCACACAGGAAAGGAACTCGAGCATAAAATATTGATCAAGGCACTACAAGCATTATCGAAG GAGAATATATGGAGGGTGAAGGGCTTTGTTCGATTGATTAAAGAGGATTCTGAAGCTTCAACGATTCACATCCTC AACTGGGCCTTTGGTCGGTACGAATTGAGCGCCGTCCGGAGTGAGAACGGAAGTCAGTACCTTGGGGAAGGAGAG GTCGTCAGACTGACGGTGATGGGGGAACGCGGGGAGGTGGCGAGAGCGGCCAGGAGGCTGGCAGAAGAGATAGGA GCGAGCGTTGGCGGATAG |
| Transcript | >AgabiH39|081430 ATGCCCGACGCCATCCCGATCACCGTCTTCACTGGCTTTCTGGGCGCAGGGAAGACCTCCGTCATCCTCTCTCTT CTCCCTAAGCTACCCCCGGGCTACAAGGCTGTCTTGCTCAAGAATGAGTTTGGCGATCTCGAAGTCGACAGCAAG CTCGCGAACGAGTCAAGCCTCGCCGGTGTCAGTGAAATCCTCAACGGCTGCATGTGCTGTGTGCTGGTGGGCCAG ATGCAGACAGCCCTCCTAGAAATTCGAGACAAGTACCGTCCAGATCGTATCCTAATCGAGTGCTCCGGTTCTGCG TTCCCAGCAACGCTTGCATTTCAAATCAGAGAGATCGAAAGGCAGACGGCCAGTGACCTCAAACTCGATTCCATC GTCACCGTCATCGATGCGGAAAACTTTATTGGCTACGAAGACCAATCCCCTACTGCACGTATGCAGGCCTCATAT ACGGACATCATTCTCATAAACAAATGGGAACATGTGTCCGAACGTCAACTCGATGAGGTTATTGACCATTTGAAC ACACTCAACGACACTACTCCGAAAATCAAATGTCAAGGCCGCAACGGTGTCGATCCCGCTCTGATTTTCGGCCTC CAGACCCAGTTGTTCCTCAAGTCTTTGTCAACGTCAGGAGAAACCGACGCCATGCACCACGACGAAGTAGAAACA GTAACATTATACAGCGGTGGCATCTTTGAGAGACCTCTGCACCATTCAGACTCTTGCCACCATGAACACAGTGCT TCCGAGGGCCTTTCTCACACAGGAAAGGAACTCGAGCATAAAATATTGATCAAGGCACTACAAGCATTATCGAAG GAGAATATATGGAGGGTGAAGGGCTTTGTTCGATTGATTAAAGAGGATTCTGAAGCTTCAACGATTCACATCCTC AACTGGGCCTTTGGTCGGTACGAATTGAGCGCCGTCCGGAGTGAGAACGGAAGTCAGTACCTTGGGGAAGGAGAG GTCGTCAGACTGACGGTGATGGGGGAACGCGGGGAGGTGGCGAGAGCGGCCAGGAGGCTGGCAGAAGAGATAGGA GCGAGCGTTGGCGGATAG |
| Gene | >AgabiH39|081430 ATGCCCGACGCCATCCCGATCACCGTCTTCACTGGCTTTCTGGGCGCAGGGAAGACCTCCGTCATCCTCTCTCTT CTCCCTAAGCTACCCCCGGGCTACAAGGCTGTCTTGCTCAAGAATGAGTTTGGCGATCTCGAAGGTGAGGTTTTC TGTTCTCCTCAGATAATTACCCACCGACGTTGGACATGGCCAAGTCGACAGCAAGCTCGCGAACGAGTCAAGCCT CGCCGGTGTCAGTGAAATCCTCAACGGCTGCATGTGTGTATTTACTTGGGGTCCCGAGCAACTGGATGAACGACC CCTAGGTGCTGTGTGCTGGTGGGCCAGATGCAGACAGCCCTCCTAGAAATTCGAGGTGCGTATAAGAGGCCGCTG GTTAGACTCATTCATCGGGTACTCATTGATTTCCAGACAAGTACCGTCCAGATCGTATCCTAATCGAGTGCTCGT TCGTGGAAATGTCCCTTATCCATTGCAGGCAAACTCACTTCAAGTGCCAGCGGTTCTGCGTTCCCAGCAACGCTT GCATTTCAAATCAGAGAGATCGAAAGGCAGACGGCCAGTGACCTCAAACTCGATTCCATCGTCACCGTCATCGAT GCGGAAAACTTTATTGGCTACGAAGACCAATCCCCTACTGCACGTATGCAGGCCTCATATACGGACATCATTCTC ATAGTCAGTTTTCTAACGCCTTTTGGCAGGTTTTATGCTAAAAATGCCGTAGAACAAATGGGAACATGTGTCCGA ACGTCAACTCGATGAGGTTATTGACCATTTGAACACACTCAACGACACTACTCCGAAAATCAAATGTCAAGGCCG CAACGGTGTCGATCCCGCTCTGATTTTCGGCCTCCAGACCCAGTTGTTCCTCAAGTCTTTGTCAACGTCAGGAGA AACCGACGCCATGCACCACGACGAAGTAGAAACAGTAACATTATACAGCGGTGGCATCTTTGAGAGACCTCTGCA CCATTCAGACTCTTGCCACCATGAACACAGTGCTTCCGAGGGCCTTTCTCACACAGGAAAGGAACTCGAGCATAA AATATTGATCAAGGCACTACAAGCATTATCGAAGGAGAATATATGGAGGGTGAAGGGCTTTGTTCGATTGATTAA AGAGGATTCTGAAGCTTCAACGATTCACATCCTCAACTGGGCCTTTGGTCGGTACGAATTGAGCGCCGTCCGGAG TGAGAACGGAAGTCAGTACCTTGGGGAAGGAGAGGTCGTCAGACTGACGGTGATGGGGGAACGCGGGGAGGTGGC GAGAGCGGCCAGGAGGCTGGCAGAAGAGATAGGAGCGAGCGTTGGCGGATAG |