Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|049060
Gene name
Locationscaffold_02:2524074..2524444
Strand+
Gene length (bp)370
Transcript length (bp)261
Coding sequence length (bp)261
Protein length (aa) 87

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 1.2E-07 12 56
PF00646 F-box F-box domain 2.0E-05 13 53

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup1593
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|016750
Agaricus bisporus var bisporus H39 AgabiH39|049060 (this protein)
Agaricus bisporus var bisporus H39 AgabiH39|099480
Agaricus bisporus var bisporus H39 AgabiH39|099490
Agaricus bisporus var bisporus H39 AgabiH39|099500
Agaricus bisporus var bisporus H39 AgabiH39|400700
Agaricus bisporus var bisporus H39 AgabiH39|400800
Agaricus bisporus var bisporus H97 AgabiH97|016680
Agaricus bisporus var bisporus H97 AgabiH97|016750
Agaricus bisporus var bisporus H97 AgabiH97|049060
Agaricus bisporus var bisporus H97 AgabiH97|099480
Agaricus bisporus var bisporus H97 AgabiH97|099490
Agaricus bisporus var bisporus H97 AgabiH97|099500
Agaricus bisporus var bisporus H97 AgabiH97|099810
Agaricus bisporus var bisporus H97 AgabiH97|099830

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|049060
MTTRLPGEKPCITSLPIEIIWRIFMQLDYPSLLAIKQMCKVFHSITKTRQFWHDYVKRLCEDYEMIPPKEEIEEY
NEMELERWALQ*
Coding >AgabiH39|049060
ATGACCACTAGGTTGCCTGGTGAAAAGCCTTGCATCACTTCTCTACCTATTGAAATCATATGGCGAATTTTCATG
CAATTGGACTACCCAAGCCTGCTTGCAATCAAACAAATGTGCAAAGTTTTTCATTCAATTACGAAAACCCGCCAA
TTTTGGCATGATTATGTTAAGAGGCTCTGTGAAGACTATGAAATGATTCCTCCCAAAGAAGAAATCGAAGAGTAT
AATGAAATGGAGCTGGAACGATGGGCCTTGCAATGA
Transcript >AgabiH39|049060
ATGACCACTAGGTTGCCTGGTGAAAAGCCTTGCATCACTTCTCTACCTATTGAAATCATATGGCGAATTTTCATG
CAATTGGACTACCCAAGCCTGCTTGCAATCAAACAAATGTGCAAAGTTTTTCATTCAATTACGAAAACCCGCCAA
TTTTGGCATGATTATGTTAAGAGGCTCTGTGAAGACTATGAAATGATTCCTCCCAAAGAAGAAATCGAAGAGTAT
AATGAAATGGAGCTGGAACGATGGGCCTTGCAATGA
Gene >AgabiH39|049060
ATGACCACTAGGTTGCCTGGTGGTGAGCTATCGACTTTGTCGTCCATACACACTCTCACCTACGTCATAAAGAAA
AGCCTTGCATCACTTCTCTACCTATTGAAATCATATGGCGAATTTTCATGCAATTGGACTACCCAAGCCTGCTTG
CAATCAAACAAGTGCGTCCTCTTTTCTACTCTCGGATTGCAAGCGCAATACCGTTTATTTCGACACGTAGATGTG
CAAAGTTTTTCATTCAATTACGAAAACCCGCCAATTTTGGCATGATTATGTTAAGAGGCTCTGTGAAGACTATGA
AATGATTCCTCCCAAAGAAGAAATCGAAGAGTATAATGAAATGGAGCTGGAACGATGGGCCTTGCAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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