Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|040930
Gene name
Locationscaffold_02:544763..546676
Strand+
Gene length (bp)1913
Transcript length (bp)1443
Coding sequence length (bp)1443
Protein length (aa) 481

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01170 UPF0020 Putative RNA methylase family UPF0020 5.5E-07 211 330

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94636|TRM11_SCHPO tRNA (guanine(10)-N2)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm11 PE=3 SV=2 22 470 7.0E-78
sp|Q12463|TRM11_YEAST tRNA (guanine(10)-N2)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM11 PE=1 SV=1 21 472 1.0E-76
sp|Q6NS23|TRM11_XENLA tRNA (guanine(10)-N2)-methyltransferase homolog OS=Xenopus laevis GN=trmt11 PE=2 SV=1 21 473 3.0E-74
sp|Q5R962|TRM11_PONAB tRNA (guanine(10)-N2)-methyltransferase homolog OS=Pongo abelii GN=TRMT11 PE=2 SV=1 15 473 8.0E-71
sp|Q7Z4G4|TRM11_HUMAN tRNA (guanine(10)-N2)-methyltransferase homolog OS=Homo sapiens GN=TRMT11 PE=1 SV=1 15 473 2.0E-70
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94636|TRM11_SCHPO tRNA (guanine(10)-N2)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm11 PE=3 SV=2 22 470 7.0E-78
sp|Q12463|TRM11_YEAST tRNA (guanine(10)-N2)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM11 PE=1 SV=1 21 472 1.0E-76
sp|Q6NS23|TRM11_XENLA tRNA (guanine(10)-N2)-methyltransferase homolog OS=Xenopus laevis GN=trmt11 PE=2 SV=1 21 473 3.0E-74
sp|Q5R962|TRM11_PONAB tRNA (guanine(10)-N2)-methyltransferase homolog OS=Pongo abelii GN=TRMT11 PE=2 SV=1 15 473 8.0E-71
sp|Q7Z4G4|TRM11_HUMAN tRNA (guanine(10)-N2)-methyltransferase homolog OS=Homo sapiens GN=TRMT11 PE=1 SV=1 15 473 2.0E-70
sp|Q7TNK6|TRM11_RAT tRNA (guanine(10)-N2)-methyltransferase homolog OS=Rattus norvegicus GN=Trmt11 PE=2 SV=1 20 473 1.0E-68
sp|Q9CWH5|TRM11_MOUSE tRNA (guanine(10)-N2)-methyltransferase homolog OS=Mus musculus GN=Trmt11 PE=1 SV=1 20 473 3.0E-68
sp|Q05B63|TRM11_BOVIN tRNA (guanine(10)-N2)-methyltransferase homolog OS=Bos taurus GN=TRMT11 PE=2 SV=1 20 473 2.0E-67
sp|Q6YJI5|TRM11_CHICK tRNA (guanine(10)-N2)-methyltransferase homolog OS=Gallus gallus GN=TRMT11 PE=2 SV=1 30 473 4.0E-66
sp|Q54QA6|TRM11_DICDI tRNA (guanine(10)-N2)-methyltransferase homolog OS=Dictyostelium discoideum GN=trmt11 PE=3 SV=1 21 468 1.0E-54
sp|Q58120|TMG10_METJA tRNA (guanine(10)-N2)-dimethyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trmG10 PE=3 SV=1 212 328 4.0E-09
sp|O26820|TMG10_METTH tRNA (guanine(10)-N2)-dimethyltransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=trmG10 PE=3 SV=1 211 335 5.0E-09
sp|P05409|TMG10_METTL Probable tRNA (guanine(10)-N2)-dimethyltransferase (Fragment) OS=Methanothermococcus thermolithotrophicus GN=trmG10 PE=3 SV=1 223 328 3.0E-06
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GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup3628
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|040930 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|040930
Rhodonia placenta FPRL280 RhoplFPRL280|100_14

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|040930
MVKKDNHSLPIRYQLESMRTRYLVAFAQSHSDFRLPELQSISELHDFHIHLPDEPDTSRPFMVVELEDEKHAVIL
AERCILIKSIYEFYAQGETYDEVHKMNRSNRHLWEKYIPNTSFKFNVTGFNHTIPQRRQRDVIENFAYMDFRGKI
DMKNPEIIMACFEEYECRQAPANGLPRKRCEDDGSFKEIFFGRLIVEGTARQLVGVFDVKKRAYFGNTSMEAEIS
LLMANQTLASPGKLIYDPFMGTGSMAYPIAYFGALVFGSDIDGRQMRGKGKPPGVIRAATQYGVASKIIDLCTFD
VTHNPWRCGELFDAIITDPPYGVRAGAKRLGRKKELSEEKKALYFQHSQSPRPDDQPYIPPTKPYELSNLATDLV
LLARYLLKPGGRLVFFLPTVTDEYQEVDIHTMMCEGMEVIANSLQDFGSWGRRLITIRKTSNNKYLPPAYRPVAG
EAENAHVPAHRDFREKYFQGFNKDGDSLAA*
Coding >AgabiH39|040930
ATGGTCAAAAAAGATAATCATTCGTTACCTATTCGTTACCAACTGGAATCAATGAGAACTCGTTATCTCGTCGCC
TTTGCCCAATCTCATAGCGACTTCCGACTCCCAGAATTACAGTCGATCTCGGAACTTCACGACTTTCACATTCAT
CTACCAGATGAGCCTGATACATCAAGGCCCTTCATGGTCGTGGAACTCGAGGACGAGAAGCATGCGGTTATTTTG
GCAGAAAGATGCATCCTAATCAAGTCAATATACGAGTTTTATGCTCAGGGAGAAACGTACGACGAGGTCCATAAA
ATGAACCGCTCCAATAGACACCTATGGGAGAAATACATCCCGAATACATCCTTTAAATTCAACGTCACAGGATTC
AATCATACAATACCTCAAAGAAGGCAGCGCGACGTTATTGAGAATTTCGCGTACATGGACTTTCGGGGTAAAATT
GACATGAAAAATCCCGAAATAATCATGGCATGCTTCGAAGAATACGAGTGCCGTCAAGCGCCAGCGAATGGCCTC
CCTCGCAAGCGGTGCGAAGATGACGGTAGTTTCAAAGAAATTTTCTTTGGGAGGTTGATAGTAGAAGGTACTGCA
CGGCAACTGGTTGGTGTGTTTGATGTGAAGAAACGCGCCTACTTCGGGAACACCAGCATGGAGGCCGAGATTTCT
CTTCTTATGGCCAACCAAACTTTGGCCTCTCCAGGTAAATTGATATATGACCCCTTCATGGGAACTGGAAGCATG
GCATATCCGATAGCATACTTTGGAGCTCTCGTATTCGGTTCAGACATTGACGGAAGGCAGATGAGGGGAAAAGGA
AAGCCGCCAGGCGTCATACGGGCAGCAACTCAGTATGGCGTTGCCTCCAAGATCATCGACCTGTGCACATTCGAC
GTTACACATAATCCATGGAGATGTGGGGAATTATTTGACGCTATCATTACAGACCCTCCTTATGGCGTTCGTGCA
GGAGCGAAACGGCTCGGCCGCAAGAAAGAATTATCAGAGGAGAAGAAAGCGCTTTATTTCCAGCACTCCCAGAGC
CCAAGACCTGACGATCAGCCGTATATACCACCAACGAAACCTTATGAGCTATCCAATTTGGCGACGGACCTAGTT
TTGCTCGCACGGTATCTACTTAAACCGGGGGGTCGATTAGTCTTTTTTCTCCCTACTGTTACCGACGAATATCAA
GAAGTCGACATCCATACTATGATGTGCGAAGGCATGGAAGTCATCGCAAATTCGCTACAAGATTTCGGTTCATGG
GGCCGCCGCCTCATCACGATTCGAAAAACCTCAAATAATAAATACCTACCTCCGGCGTATAGGCCCGTCGCAGGC
GAAGCTGAAAATGCACATGTCCCTGCACACCGAGATTTTAGGGAGAAGTACTTCCAGGGTTTCAACAAGGATGGT
GATTCCTTAGCGGCATGA
Transcript >AgabiH39|040930
ATGGTCAAAAAAGATAATCATTCGTTACCTATTCGTTACCAACTGGAATCAATGAGAACTCGTTATCTCGTCGCC
TTTGCCCAATCTCATAGCGACTTCCGACTCCCAGAATTACAGTCGATCTCGGAACTTCACGACTTTCACATTCAT
CTACCAGATGAGCCTGATACATCAAGGCCCTTCATGGTCGTGGAACTCGAGGACGAGAAGCATGCGGTTATTTTG
GCAGAAAGATGCATCCTAATCAAGTCAATATACGAGTTTTATGCTCAGGGAGAAACGTACGACGAGGTCCATAAA
ATGAACCGCTCCAATAGACACCTATGGGAGAAATACATCCCGAATACATCCTTTAAATTCAACGTCACAGGATTC
AATCATACAATACCTCAAAGAAGGCAGCGCGACGTTATTGAGAATTTCGCGTACATGGACTTTCGGGGTAAAATT
GACATGAAAAATCCCGAAATAATCATGGCATGCTTCGAAGAATACGAGTGCCGTCAAGCGCCAGCGAATGGCCTC
CCTCGCAAGCGGTGCGAAGATGACGGTAGTTTCAAAGAAATTTTCTTTGGGAGGTTGATAGTAGAAGGTACTGCA
CGGCAACTGGTTGGTGTGTTTGATGTGAAGAAACGCGCCTACTTCGGGAACACCAGCATGGAGGCCGAGATTTCT
CTTCTTATGGCCAACCAAACTTTGGCCTCTCCAGGTAAATTGATATATGACCCCTTCATGGGAACTGGAAGCATG
GCATATCCGATAGCATACTTTGGAGCTCTCGTATTCGGTTCAGACATTGACGGAAGGCAGATGAGGGGAAAAGGA
AAGCCGCCAGGCGTCATACGGGCAGCAACTCAGTATGGCGTTGCCTCCAAGATCATCGACCTGTGCACATTCGAC
GTTACACATAATCCATGGAGATGTGGGGAATTATTTGACGCTATCATTACAGACCCTCCTTATGGCGTTCGTGCA
GGAGCGAAACGGCTCGGCCGCAAGAAAGAATTATCAGAGGAGAAGAAAGCGCTTTATTTCCAGCACTCCCAGAGC
CCAAGACCTGACGATCAGCCGTATATACCACCAACGAAACCTTATGAGCTATCCAATTTGGCGACGGACCTAGTT
TTGCTCGCACGGTATCTACTTAAACCGGGGGGTCGATTAGTCTTTTTTCTCCCTACTGTTACCGACGAATATCAA
GAAGTCGACATCCATACTATGATGTGCGAAGGCATGGAAGTCATCGCAAATTCGCTACAAGATTTCGGTTCATGG
GGCCGCCGCCTCATCACGATTCGAAAAACCTCAAATAATAAATACCTACCTCCGGCGTATAGGCCCGTCGCAGGC
GAAGCTGAAAATGCACATGTCCCTGCACACCGAGATTTTAGGGAGAAGTACTTCCAGGGTTTCAACAAGGATGGT
GATTCCTTAGCGGCATGA
Gene >AgabiH39|040930
ATGGTCAAAAAAGATAATCATTCGTTACCTATTCGTTACCAACTGGAATCAATGAGAACTCGTTATCTCGTCGCC
TTTGCCCAATCTCATAGCGACTTCCGACTCCCAGAATTACAGTCGATCTCGGAACTTCACGACTTTCACATTCAT
CTACCAGATGAGCCTGATACATCAAGGCCCTTCATGGTCGTGGAACTCGAGGACGAGAAGCATGCGGTTATTTTG
GCAGAAAGATGCATCCTAATCAAGTAATTCGACTCTTTATCCTTTCGATAAATATGTTTATCTTTTGGATCGTCC
AAGGTCAATATACGAGTTTTATGCTCAGGGAGAAACGTACGACGAGGTCCATAAAATGAACCGCTCCAATAGACA
CCTATGGGAGAAATACATCCCGAATACATCCTTTAAATTCAACGTCACAGGATTCAATCATACAATACCTCAAAG
AAGGCAGCGCGACGTTATTGAGAATTTCGCGTACATGGACTTTCGGGGTAAAATTGACATGAAAAATCCCGAAAT
AATCATGGCATGCTTCGAAGAATGTGCGCTACTCTGTTGATGATGACTGTGGTTAACCCTTGATTGTTTTTCTTT
TACTTGTAGACGAGTGCCGTCAAGCGCCAGCGAATGGCCTCCCTCGCAAGCGGTGCGAAGATGACGGTAGTTTCA
AAGAAATTTTCTTTGGGAGGTTGGTGCGTCTGTCTCTGTGTGCCAGGGACAGCAACCCTAAATACACTTCAGATA
GTAGAAGGTACTGCACGGCAACTGGTTGGTGTGTTTGATGTGAAGAAACGCGCCTACTTCGGGAACACCAGCATG
GAGGCCGAGATTTCTCTTCTTATGGCCAACCAAACTTTGGTCAGGCGGATCATCAGCCTATAATCAGCGAGAGAC
TCATACACGATAAAGGCCTCTCCAGGTAAATTGATATATGACCCCTTCATGGGAACTGGAAGCATGGCATATGTA
AGGTCAAATGCGTATCTTCCCTTTCTGCCTTAATTTTTTTTTGTAATAGCCGATAGCATACTTTGGAGCTCTCGT
ATTCGGTTCAGACATTGACGGAAGGCAGATGAGGGGAAAAGGTAAGATATTTTACGTCCGAGAAATTTTGATGAA
CTGCACAGCCCTCACAGGAAAGCCGCCAGGCGTCATACGGGCAGCAACTCAGTATGGCGTTGCCTCCAAGATCAT
CGACCTGTGCACATTCGACGTTACACATAATCCATGGAGATGTGGGGAATTATTTGACGCTATCATTACAGACCC
TCCTTGTGAGCTTTGTCACTGATCTGCTACCTGTGACTTCACGCATTATAGATGGCGTTCGTGCAGGAGCGAAAC
GGCTCGGCCGCAAGAAAGAATTATCAGAGGAGAAGAAAGCGCTTTATTTCCAGCACTCCCAGAGCCCAAGACCGT
ATGTCACTATCAGTCATTTCGGTCTTCAGCATTATACTCTGCATCCAGTGACGATCAGCCGTATATACCACCAAC
GAAACCTTATGAGCTATCCAATTTGGCGACGGACCTAGTTTTGCTCGCACGGTATCTACTTAAACCGGGGGGTCG
ATTAGTCTTTTTTCTCCCTACTGTTACCGACGAATATCAAGAAGTCGACATCCATACTATGATGTGCGAAGGCAT
GGAAGTCATCGCAAATTCGCTACAAGATTTCGGTTCATGGGGCCGCCGCGTAAGTCTTCGCTTGTAATTTCGATT
CGCAGGAAAACTACAAGTTCCACACACAGCTCATCACGATTCGAAAAACCTCAAATAATAAATACCTACCTCCGG
CGTATAGGCCCGTCGCAGGCGAAGCTGAAAATGCACATGTCCCTGCACACCGAGATTTTAGGGAGAAGTACTTCC
AGGGTTTCAACAAGGATGGTGATTCCTTAGCGGCATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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