Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|023800
Gene name
Locationscaffold_11a:657295..659438
Strand+
Gene length (bp)2143
Transcript length (bp)1758
Coding sequence length (bp)1758
Protein length (aa) 586

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43 1.1E-70 23 323
PF17851 GH43_C2 Beta xylosidase C-terminal Concanavalin A-like domain 2.6E-24 371 580

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|A7LXU0|GH43B_BACO1 Non-reducing end alpha-L-arabinofuranosidase BoGH43B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02656 PE=1 SV=2 3 579 2.0E-75
sp|A7LXT8|GH43A_BACO1 Non-reducing end alpha-L-arabinofuranosidase BoGH43A OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02654 PE=1 SV=1 1 580 4.0E-65
sp|P94489|XYNB_BACSU Beta-xylosidase OS=Bacillus subtilis (strain 168) GN=xynB PE=1 SV=2 24 557 2.0E-63
sp|P07129|XYNB_BACPU Beta-xylosidase OS=Bacillus pumilus GN=xynB PE=1 SV=2 24 451 2.0E-58
sp|P45982|XYLB_BUTFI Xylosidase/arabinosidase OS=Butyrivibrio fibrisolvens GN=xylB PE=3 SV=1 21 579 2.0E-55
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Swissprot ID Swissprot Description Start End E-value
sp|A7LXU0|GH43B_BACO1 Non-reducing end alpha-L-arabinofuranosidase BoGH43B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02656 PE=1 SV=2 3 579 2.0E-75
sp|A7LXT8|GH43A_BACO1 Non-reducing end alpha-L-arabinofuranosidase BoGH43A OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02654 PE=1 SV=1 1 580 4.0E-65
sp|P94489|XYNB_BACSU Beta-xylosidase OS=Bacillus subtilis (strain 168) GN=xynB PE=1 SV=2 24 557 2.0E-63
sp|P07129|XYNB_BACPU Beta-xylosidase OS=Bacillus pumilus GN=xynB PE=1 SV=2 24 451 2.0E-58
sp|P45982|XYLB_BUTFI Xylosidase/arabinosidase OS=Butyrivibrio fibrisolvens GN=xylB PE=3 SV=1 21 579 2.0E-55
sp|A9ZND1|XLOA_VIBSX Xylan 1,3-beta-xylosidase OS=Vibrio sp. GN=xloA PE=1 SV=1 23 508 1.0E-52
sp|P77713|YAGH_ECOLI Putative beta-xylosidase OS=Escherichia coli (strain K12) GN=yagH PE=3 SV=1 24 562 1.0E-51
sp|Q9WXE8|XYLO_PRERU Putative beta-xylosidase OS=Prevotella ruminicola PE=3 SV=2 33 325 1.0E-12
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GO

GO Term Description Terminal node
GO:0005975 carbohydrate metabolic process Yes
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Yes
GO:0003824 catalytic activity No
GO:0016787 hydrolase activity No
GO:0016798 hydrolase activity, acting on glycosyl bonds No
GO:0044238 primary metabolic process No
GO:0008152 metabolic process No
GO:0071704 organic substance metabolic process No
GO:0008150 biological_process No
GO:0003674 molecular_function No

Deeploc

Deeploc data not available for this genome

SignalP

SignalP signal predicted Location Score
Yes 1 - 17 0.983972

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

CAZyme category E-value Start End
GH43_13 1.0E-122 23 323

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup7240
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|023800 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|023800

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|023800
MLLSLLSLTLTIASVLGVTHLQQNPILPGWNPDPTILRVGEDYFIATSTFEYFPGHPIYHSKNLVDWTLVGHGLN
RPSQLALFGTPSDAGVWAPSLRYHNGKYYLTSTTRYVYTEELRLFPRSFYVTTKDIFSDNWSDPIYFDSLGYDGD
LFWDTNGDVYLTWSGINNNQDKIYSIYQSKIDLETGTSLTPAEIIFNGTLPHDSAARPEGPHIYHINSTYYLLIA
EGGTGITHRSTIQRSTTGPAGPWENNPNNPILYNGANTSLSVQNTGHADIVQAIDGSWWGVALGVRPQGADDDDL
RLSREQLGRETFLFPVKWVDGWPVFNNGRPLSEVVLSHEEVGNDGKGGITSRETSIEGTKKPDSESFYYNNFKSH
TLDNSFYFLRTPYAPFHTLLPSGSLEIKPNSYAIGDRDSPAMILRKQTSHQEVFETELEFSEPRTRLEEAGISIF
YGDSLHNEIGVTGEGPGGGRSVVVRTVTLNQQVGPWALTTGNATLINTTYISLTSTTEPVRLRIEASPMEYTLLY
AEGKQGDWNEVARFDGSVLSIPPAGGFFFKGAAFAIYNTGNGKPSLTKARFGYWKQGQFS*
Coding >AgabiH39|023800
ATGTTATTATCACTTCTCTCCCTGACTCTGACTATCGCGTCCGTTTTGGGTGTGACACACCTTCAACAGAATCCA
ATTCTGCCAGGCTGGAATCCTGATCCTACAATACTACGTGTTGGGGAGGACTACTTTATTGCTACTTCTACGTTC
GAGTATTTTCCTGGGCATCCGATATACCATAGCAAGAATTTGGTCGATTGGACCCTCGTCGGGCATGGGTTGAAC
AGACCTTCCCAGTTGGCGCTGTTCGGAACTCCTTCGGACGCTGGTGTGTGGGCGCCGTCATTGCGGTACCATAAT
GGAAAATATTATTTGACGTCGACAACGCGATACGTGTACACTGAGGAACTACGGCTCTTCCCAAGGTCCTTCTAT
GTCACGACGAAGGACATCTTCTCCGATAACTGGAGCGACCCTATTTATTTTGACAGTCTAGGCTATGACGGCGAC
TTATTCTGGGACACCAACGGAGATGTCTACCTTACTTGGTCAGGCATAAACAATAACCAGGACAAGATCTACAGT
ATATATCAGTCCAAGATCGACCTTGAAACTGGTACATCGCTAACACCCGCTGAAATCATCTTCAACGGCACTCTT
CCTCACGATTCCGCCGCACGACCCGAAGGTCCACATATCTACCATATCAACTCAACATATTATCTTCTCATAGCT
GAAGGTGGTACAGGGATAACTCACCGGAGCACCATACAAAGAAGTACGACCGGTCCTGCCGGTCCTTGGGAAAAC
AATCCCAATAATCCTATACTTTACAATGGTGCAAATACCAGTTTGTCGGTACAAAATACTGGACATGCGGATATT
GTGCAGGCGATAGATGGAAGTTGGTGGGGAGTTGCTTTGGGAGTCCGACCACAGGGTGCAGACGACGATGATTTG
AGGTTGAGCAGGGAACAACTTGGAAGGGAAACTTTTCTGTTTCCTGTTAAATGGGTAGATGGATGGCCGGTTTTT
AATAATGGAAGGCCGTTATCCGAAGTGGTCTTATCGCATGAAGAGGTTGGCAACGATGGCAAGGGGGGCATCACT
TCAAGAGAAACTTCTATTGAAGGGACCAAGAAGCCTGATTCGGAATCATTCTACTATAATAACTTCAAATCCCAT
ACTCTCGACAATTCATTCTACTTCCTTCGTACTCCTTACGCTCCATTTCACACCCTCCTACCTTCCGGTTCTCTC
GAAATCAAACCAAACTCATACGCTATAGGAGATAGAGATTCTCCTGCTATGATCCTTCGTAAACAAACATCTCAC
CAAGAGGTTTTCGAAACGGAATTAGAGTTTTCCGAACCAAGAACGAGGCTTGAAGAAGCTGGGATCAGCATTTTT
TATGGTGATTCCTTGCATAACGAAATTGGCGTTACTGGAGAAGGTCCGGGAGGAGGAAGGTCTGTGGTAGTCAGG
ACGGTGACTTTGAATCAGCAAGTTGGACCTTGGGCATTAACGACGGGAAATGCTACTCTCATAAATACGACATAT
ATTTCTCTCACAAGTACAACCGAGCCAGTACGACTTCGTATCGAAGCCTCACCTATGGAATACACTCTACTCTAC
GCTGAAGGTAAACAAGGAGATTGGAATGAAGTAGCGAGATTTGATGGGTCTGTGTTGTCTATTCCACCCGCTGGT
GGTTTCTTCTTTAAAGGTGCCGCATTTGCGATTTACAATACGGGAAATGGAAAACCGAGTTTGACGAAAGCGAGA
TTTGGGTATTGGAAGCAGGGACAATTTTCATGA
Transcript >AgabiH39|023800
ATGTTATTATCACTTCTCTCCCTGACTCTGACTATCGCGTCCGTTTTGGGTGTGACACACCTTCAACAGAATCCA
ATTCTGCCAGGCTGGAATCCTGATCCTACAATACTACGTGTTGGGGAGGACTACTTTATTGCTACTTCTACGTTC
GAGTATTTTCCTGGGCATCCGATATACCATAGCAAGAATTTGGTCGATTGGACCCTCGTCGGGCATGGGTTGAAC
AGACCTTCCCAGTTGGCGCTGTTCGGAACTCCTTCGGACGCTGGTGTGTGGGCGCCGTCATTGCGGTACCATAAT
GGAAAATATTATTTGACGTCGACAACGCGATACGTGTACACTGAGGAACTACGGCTCTTCCCAAGGTCCTTCTAT
GTCACGACGAAGGACATCTTCTCCGATAACTGGAGCGACCCTATTTATTTTGACAGTCTAGGCTATGACGGCGAC
TTATTCTGGGACACCAACGGAGATGTCTACCTTACTTGGTCAGGCATAAACAATAACCAGGACAAGATCTACAGT
ATATATCAGTCCAAGATCGACCTTGAAACTGGTACATCGCTAACACCCGCTGAAATCATCTTCAACGGCACTCTT
CCTCACGATTCCGCCGCACGACCCGAAGGTCCACATATCTACCATATCAACTCAACATATTATCTTCTCATAGCT
GAAGGTGGTACAGGGATAACTCACCGGAGCACCATACAAAGAAGTACGACCGGTCCTGCCGGTCCTTGGGAAAAC
AATCCCAATAATCCTATACTTTACAATGGTGCAAATACCAGTTTGTCGGTACAAAATACTGGACATGCGGATATT
GTGCAGGCGATAGATGGAAGTTGGTGGGGAGTTGCTTTGGGAGTCCGACCACAGGGTGCAGACGACGATGATTTG
AGGTTGAGCAGGGAACAACTTGGAAGGGAAACTTTTCTGTTTCCTGTTAAATGGGTAGATGGATGGCCGGTTTTT
AATAATGGAAGGCCGTTATCCGAAGTGGTCTTATCGCATGAAGAGGTTGGCAACGATGGCAAGGGGGGCATCACT
TCAAGAGAAACTTCTATTGAAGGGACCAAGAAGCCTGATTCGGAATCATTCTACTATAATAACTTCAAATCCCAT
ACTCTCGACAATTCATTCTACTTCCTTCGTACTCCTTACGCTCCATTTCACACCCTCCTACCTTCCGGTTCTCTC
GAAATCAAACCAAACTCATACGCTATAGGAGATAGAGATTCTCCTGCTATGATCCTTCGTAAACAAACATCTCAC
CAAGAGGTTTTCGAAACGGAATTAGAGTTTTCCGAACCAAGAACGAGGCTTGAAGAAGCTGGGATCAGCATTTTT
TATGGTGATTCCTTGCATAACGAAATTGGCGTTACTGGAGAAGGTCCGGGAGGAGGAAGGTCTGTGGTAGTCAGG
ACGGTGACTTTGAATCAGCAAGTTGGACCTTGGGCATTAACGACGGGAAATGCTACTCTCATAAATACGACATAT
ATTTCTCTCACAAGTACAACCGAGCCAGTACGACTTCGTATCGAAGCCTCACCTATGGAATACACTCTACTCTAC
GCTGAAGGTAAACAAGGAGATTGGAATGAAGTAGCGAGATTTGATGGGTCTGTGTTGTCTATTCCACCCGCTGGT
GGTTTCTTCTTTAAAGGTGCCGCATTTGCGATTTACAATACGGGAAATGGAAAACCGAGTTTGACGAAAGCGAGA
TTTGGGTATTGGAAGCAGGGACAATTTTCATGA
Gene >AgabiH39|023800
ATGTTATTATCACTTCTCTCCCTGACTCTGACTATCGCGTCCGTTTTGGGTGTGACACACCTTCAACAGAATCCA
ATTCTGCCAGGCTGGAATCCTGATCCTACAATACTACGTGTTGGGGAGGACTACTTTATTGCTACTTCTACGTTC
GAGTATTTTCCTGGGCATCCGATATACCATAGCAAGAATTTGGTCGATTGGACCCTCGTCGGGCATGGGTTGAAC
AGACCTTCCCAGTTGGCGCTGTTCGGAACTCCTTCGGACGCTGGTGCGTATTATTCACTTGTACTCCCCCAAGTA
ATGTCTGACTATCTATTGGCAGGTGTGTGGGCGCCGTCATTGCGGTACCATAATGGAAAATATTATTTGACGTCG
ACAACGCGATACGTGTACACTGGTGGGTGGACATGCACCTAATTTCTTATTTGTAGACCGCTTATACCTTCATAA
GAGGAACTACGGCTCTTCCCAAGGTCCTTCTATGTCACGACGAAGGACATCTTCTCCGATAACTGGAGCGACCCT
ATTTATTTTGGTGAGCCCGAATTCTTTATCCTCCCTGTAACTATATCTCATGTCTTGCTTCAGACAGTCTAGGCT
ATGACGGCGACTTATTCTGGGACACCAACGGAGATGTACACATTCGTTCTCTATCACTCAAGTTCCGTGCTCAAG
AAGCTGTTTCAGGTCTACCTTACTTGGTCAGGCATAAACAATAACCAGGACAAGATCTACAGTACGTCTTCCTCC
CCTCGCAATCCCTCTTCGTATTGAATGTGACTTCCTACAGGTATATATCAGTCCAAGATCGACCTTGAAACTGGT
ACATCGCTAACACCCGCTGAAATCATCTTCAACGGCACTCTTCCTCACGATTCCGCCGCACGACCCGAAGGTCCA
CATATCTACCATATCAACTCAACATATTATCTTCTCATAGCTGAAGGTGGTACAGGGATAACTCACCGGAGCACC
ATACAAAGAAGTACGACCGGTCCTGCCGGTCCTTGGGAAAACAATCCCAATAATCCTATACTTTACAATGGTGCA
AATACCAGTTTGTCGGTACAAAATACTGGACATGCGGATATTGTGCAGGCGATAGATGGAAGTTGGTGGGGAGTT
GCTTTGGGAGTCCGACCACAGGGTGCAGACGACGATGATTTGAGGTTGAGCAGGGAACAACTTGGAAGGGAAACT
TTTCTGTTTCCTGTTAAATGGGTAGATGGATGGCCGGTTTTTAATAATGGAAGGCCGTTATCCGAAGTGGTCTTA
TCGCATGAAGAGGTTGGCAACGATGGCAAGGGGGGCATCACTTCAAGAGAAACTTCTATTGAAGGGACCAAGAAG
CCTGATTCGGAATCATTCTACTATAATAACTTCAAATCCCATACTCTCGACAATTCATTCTACTTCCTTCGTACT
CCTTACGCTCCATTTCACACCCTCCTACCTTCCGGTTCTCTCGAAATCAAACCAAACTCATACGCTATAGGAGAT
AGAGATTCTCCTGCTATGATCCTTCGTAAACAAACATCTCACCAAGAGGTTTTCGAAACGGAATTAGAGTTTTCC
GAACCAAGAACGAGGCTTGAAGAAGCTGGGATCAGCATTTTTTATGGTGATTCCTTGCATAACGAAATTGGCGTT
ACTGGAGAAGGTCCGGGAGGAGGAAGGTCTGTGGTAGTCAGGACGGTGACTTTGAATCAGCAAGTTGGACCTTGG
GCATTAACGACGGGAAATGCTACTCTCATAAATGTAGGTGCACTATATCTATCATCTTATCCTCGTGGCCTCTTC
AATTTAACACATATCATAGACGACATATATTTCTCTCACAAGTACAACCGAGCCAGTACGACTTCGTATCGAAGC
CTCACCTATGGAATACACTCTACTCTACGCTGAAGGTAAACAAGGAGATTGGAATGAAGTAGCGAGATTTGATGG
GTCTGTGTTGTCTATTCCACCCGCTGGGTAAGTCATTTACACCAATACCAAAGAAGGCATTCATTTTATTACGCC
TTTCTATAGTGGTTTCTTCTTTAAAGGTGCCGCATTTGCGATTTACAATACGGGAAATGGAAAACCGAGTTTGAC
GAAAGCGAGATTTGGGTATTGGAAGCAGGGACAATTTTCATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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