Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|020340
Gene name
Locationscaffold_10:1411587..1411954
Strand-
Gene length (bp)367
Transcript length (bp)312
Coding sequence length (bp)312
Protein length (aa) 104

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05347 Complex1_LYR Complex 1 protein (LYR family) 2.7E-15 13 69

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6Q560|ISD11_YEAST Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 PE=1 SV=1 4 89 2.0E-18
sp|Q8K215|LYRM4_MOUSE LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1 6 94 7.0E-18
sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1 6 89 6.0E-17
sp|Q0VCG0|LYRM4_BOVIN LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1 6 94 1.0E-16
sp|B5FZA8|LYRM4_TAEGU LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1 6 91 1.0E-15
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Swissprot ID Swissprot Description Start End E-value
sp|Q6Q560|ISD11_YEAST Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 PE=1 SV=1 4 89 2.0E-18
sp|Q8K215|LYRM4_MOUSE LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1 6 94 7.0E-18
sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1 6 89 6.0E-17
sp|Q0VCG0|LYRM4_BOVIN LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1 6 94 1.0E-16
sp|B5FZA8|LYRM4_TAEGU LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1 6 91 1.0E-15
sp|Q6DCS1|LYRM4_XENLA LYR motif-containing protein 4 OS=Xenopus laevis GN=lyrm4 PE=3 SV=1 6 89 6.0E-14
sp|Q54FN9|LYRM4_DICDI LYR motif-containing protein 4 OS=Dictyostelium discoideum GN=lyrm4 PE=3 SV=1 9 89 7.0E-12
sp|B5X5U9|LYM4A_SALSA LYR motif-containing protein 4A OS=Salmo salar GN=lyrm4a PE=3 SV=1 6 89 3.0E-11
sp|O46098|BCN92_DROME Protein bcn92 OS=Drosophila melanogaster GN=bcn92 PE=3 SV=1 10 89 7.0E-10
sp|O60068|ISD11_SCHPO Protein isd11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isd11 PE=3 SV=1 10 89 9.0E-10
sp|P82116|BCN92_DROSU Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1 10 89 1.0E-09
sp|B8JLQ0|LYRM4_DANRE LYR motif-containing protein 4 OS=Danio rerio GN=lyrm4 PE=3 SV=1 6 89 1.0E-09
sp|B5XD90|LYM4B_SALSA LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1 8 89 2.0E-09
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|020340
MPPPVITAPSRGSILHLYAAMLRTSRSFSSYNFRHYFVRKTKDSFRAFQTEGDPQRLRNMYAGAVKDLSVLRRSA
VVNQLYGGWKLSVEVPRKPEEIRERGDT*
Coding >AgabiH39|020340
ATGCCACCGCCAGTCATCACAGCTCCCTCGCGGGGCTCGATTCTCCATCTCTATGCTGCTATGCTGCGCACATCA
AGGTCTTTCAGCTCGTACAACTTTCGACACTATTTCGTTCGCAAAACGAAGGACTCTTTTCGGGCATTCCAGACC
GAGGGGGACCCGCAGAGGCTGCGAAATATGTATGCGGGTGCCGTAAAGGACCTCTCAGTCCTTCGTCGAAGCGCA
GTCGTCAACCAACTGTATGGCGGATGGAAGTTGTCGGTCGAAGTTCCAAGAAAGCCTGAAGAAATCCGGGAACGG
GGAGATACCTGA
Transcript >AgabiH39|020340
ATGCCACCGCCAGTCATCACAGCTCCCTCGCGGGGCTCGATTCTCCATCTCTATGCTGCTATGCTGCGCACATCA
AGGTCTTTCAGCTCGTACAACTTTCGACACTATTTCGTTCGCAAAACGAAGGACTCTTTTCGGGCATTCCAGACC
GAGGGGGACCCGCAGAGGCTGCGAAATATGTATGCGGGTGCCGTAAAGGACCTCTCAGTCCTTCGTCGAAGCGCA
GTCGTCAACCAACTGTATGGCGGATGGAAGTTGTCGGTCGAAGTTCCAAGAAAGCCTGAAGAAATCCGGGAACGG
GGAGATACCTGA
Gene >AgabiH39|020340
ATGCCACCGCCAGTCATCACAGCTCCCTCGCGGGGCTCGATTCTCCATCTCTATGCTGCTATGCTGCGCACATCA
AGGTCTTTCAGCTCGTACAACTTTCGACACTATTTCGTTCGCAAAACGAAGGACTCTTTTCGGGCATTCCAGGCG
AGTGCTTTCCCTGGCCTAGGATAAATTTAAACTCATGCGCGCGATTATTCAGACCGAGGGGGACCCGCAGAGGCT
GCGAAATATGTATGCGGGTGCCGTAAAGGACCTCTCAGTCCTTCGTCGAAGCGCAGTCGTCAACCAACTGTATGG
CGGATGGAAGTTGTCGGTCGAAGTTCCAAGAAAGCCTGAAGAAATCCGGGAACGGGGAGATACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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