Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|020230
Gene name
Locationscaffold_10:1373541..1374229
Strand+
Gene length (bp)688
Transcript length (bp)519
Coding sequence length (bp)519
Protein length (aa) 173

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12296 HsbA Hydrophobic surface binding protein A 5.7E-28 22 143

Swissprot hits

(None)

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

SignalP signal predicted Location Score
Yes 1 - 18 0.999697

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup2338
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|020230 (this protein)
Agaricus bisporus var bisporus H39 AgabiH39|020300
Agaricus bisporus var bisporus H97 AgabiH97|020230
Agaricus bisporus var bisporus H97 AgabiH97|020300

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|020230
MQLKSLVYLGSAFTLVFGATTQDVLNDINTLRSRLNTLDNDLHDFSGGILDALAIHNAATSVQSATDDTTSDVQD
VPTPISEADAQSILDAITGIAPIIEDSLTTIVAKKSDFESVPLGGISIARGDLNNLAGSTSNLEDALIASTPADL
LDEANAIRNEIDAAFAAAIAAF*
Coding >AgabiH39|020230
ATGCAACTCAAGTCCCTTGTCTATCTTGGTTCCGCGTTCACTCTTGTCTTCGGAGCAACCACTCAAGATGTCTTG
AACGATATTAATACCCTCAGGTCTCGTTTAAACACCTTGGATAATGACCTCCATGACTTTTCGGGTGGCATATTG
GATGCCTTGGCCATCCATAACGCTGCTACCAGTGTTCAATCCGCCACTGATGACACGACTAGCGATGTACAGGAT
GTTCCAACTCCCATTTCTGAAGCTGACGCTCAAAGCATTCTTGATGCTATCACTGGGATAGCACCCATTATTGAA
GATTCGCTCACGACAATCGTAGCCAAGAAGTCCGATTTCGAGTCTGTCCCCCTCGGTGGTATCAGTATCGCCAGG
GGTGATCTCAACAATCTTGCCGGGAGTACTTCTAACCTTGAGGATGCTCTTATTGCATCTACTCCTGCTGATTTA
CTTGATGAAGCCAATGCTATCAGGAATGAGATTGATGCTGCCTTTGCTGCCGCTATCGCAGCTTTTTAG
Transcript >AgabiH39|020230
ATGCAACTCAAGTCCCTTGTCTATCTTGGTTCCGCGTTCACTCTTGTCTTCGGAGCAACCACTCAAGATGTCTTG
AACGATATTAATACCCTCAGGTCTCGTTTAAACACCTTGGATAATGACCTCCATGACTTTTCGGGTGGCATATTG
GATGCCTTGGCCATCCATAACGCTGCTACCAGTGTTCAATCCGCCACTGATGACACGACTAGCGATGTACAGGAT
GTTCCAACTCCCATTTCTGAAGCTGACGCTCAAAGCATTCTTGATGCTATCACTGGGATAGCACCCATTATTGAA
GATTCGCTCACGACAATCGTAGCCAAGAAGTCCGATTTCGAGTCTGTCCCCCTCGGTGGTATCAGTATCGCCAGG
GGTGATCTCAACAATCTTGCCGGGAGTACTTCTAACCTTGAGGATGCTCTTATTGCATCTACTCCTGCTGATTTA
CTTGATGAAGCCAATGCTATCAGGAATGAGATTGATGCTGCCTTTGCTGCCGCTATCGCAGCTTTTTAG
Gene >AgabiH39|020230
ATGCAACTCAAGTCCCTTGTCTATCTTGGTTCCGCGTTCACTCTTGTCTTCGGAGCAACCACTCAAGATGTCTTG
AACGATATTAATACCCTCAGGTCTCGTTTAAACACCTTGGATAATGACCTCCATGACTTTTCGGGTGGCATATTG
GATGCCTTGGTTAGTGTTCCATTCCGATGGGAAAGTCTGTAGTTAATCAGGCCATTATTAGGCCATCCATAACGC
TGCTACCAGTGTTCAATCCGCCACTGATGACACGACTAGCGATGTACAGGTGAGCTTGTTTTGCGCTATCAGTGT
TATTGCTGTAATCCGATTCACTGACACGAACAAGGATGTTCCAACTCCCATTTCTGAAGCTGACGCTCAAAGCAT
TCTTGATGCTATCACTGGGATAGCACCCATTATTGAAGATTCGCTCACGACAATCGTAGCCAAGAAGTCCGATTT
CGAGTCTGTCCCCCTCGGTGGTATCAGTATCGCCAGGGGTGATCTCAACAATCTTGCCGGGAGTACTTCTAACCT
TGAGGATGCTCTTATTGCATCTACTCCTGTAAGTCATCCTGCGCTGCGGTTTCTTATCTTTTGCTAAGCATTACA
TTTTTCCTAGGCTGATTTACTTGATGAAGCCAATGCTATCAGGAATGAGATTGATGCTGCCTTTGCTGCCGCTAT
CGCAGCTTTTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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