Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|019370
Gene name
Locationscaffold_10:1183715..1185343
Strand+
Gene length (bp)1628
Transcript length (bp)1521
Coding sequence length (bp)1521
Protein length (aa) 507

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 3.8E-09 56 132

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup244
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|016410
Agaricus bisporus var bisporus H39 AgabiH39|356900
Agaricus bisporus var bisporus H39 AgabiH39|099680
Agaricus bisporus var bisporus H39 AgabiH39|096020
Agaricus bisporus var bisporus H39 AgabiH39|096000
Agaricus bisporus var bisporus H39 AgabiH39|095890
Agaricus bisporus var bisporus H39 AgabiH39|095880
Agaricus bisporus var bisporus H39 AgabiH39|095450
Agaricus bisporus var bisporus H39 AgabiH39|086600
Agaricus bisporus var bisporus H39 AgabiH39|086590
Agaricus bisporus var bisporus H39 AgabiH39|357400
Agaricus bisporus var bisporus H39 AgabiH39|086500
Agaricus bisporus var bisporus H39 AgabiH39|029400
Agaricus bisporus var bisporus H39 AgabiH39|019480
Agaricus bisporus var bisporus H39 AgabiH39|019400
Agaricus bisporus var bisporus H39 AgabiH39|019380
Agaricus bisporus var bisporus H39 AgabiH39|019370 (this protein)
Agaricus bisporus var bisporus H39 AgabiH39|019360
Agaricus bisporus var bisporus H39 AgabiH39|016460
Agaricus bisporus var bisporus H39 AgabiH39|016450
Agaricus bisporus var bisporus H39 AgabiH39|086550
Agaricus bisporus var bisporus H97 AgabiH97|086590
Agaricus bisporus var bisporus H97 AgabiH97|086600
Agaricus bisporus var bisporus H97 AgabiH97|086950
Agaricus bisporus var bisporus H97 AgabiH97|096000
Agaricus bisporus var bisporus H97 AgabiH97|095880
Agaricus bisporus var bisporus H97 AgabiH97|095890
Agaricus bisporus var bisporus H97 AgabiH97|086550
Agaricus bisporus var bisporus H97 AgabiH97|095450
Agaricus bisporus var bisporus H97 AgabiH97|086500
Agaricus bisporus var bisporus H97 AgabiH97|019370
Agaricus bisporus var bisporus H97 AgabiH97|019480
Agaricus bisporus var bisporus H97 AgabiH97|019400
Agaricus bisporus var bisporus H97 AgabiH97|019380
Agaricus bisporus var bisporus H97 AgabiH97|019360
Agaricus bisporus var bisporus H97 AgabiH97|016460
Agaricus bisporus var bisporus H97 AgabiH97|016450
Agaricus bisporus var bisporus H97 AgabiH97|016410
Agaricus bisporus var bisporus H97 AgabiH97|096020
Agaricus bisporus var bisporus H97 AgabiH97|029400
Agaricus bisporus var bisporus H97 AgabiH97|099680

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|019370
MSTAECPRCGYHLATELKEEVSALGAEVRRLEDLIPRLQEEKAVLLRRINSAQERTRHLPFEVLSNIFLFARPPI
DFTACEPRLYHSTDPDYPLLMGHFDPDEDFHHTLAAVSHRWRQVALSTPQLWTSISLHVLNTFTGFNTSLLDLYF
EHARDLPVSVQMDFTNPALPLAEFIFDENADKVQSLNLIRPPAEWFYSTRSNFPHCDSVTIYWLTPEDESNFFHD
FEEFTSLHQVKLSGSGFTFTLPASVSALQLSHTDLTGCLESLTRSPNLIRLDITNARTTAFSSGLFSVAIEPIVL
HRLEILTWSEMVVDGNHDFLRYARFVNLTTLEWDEYRTYHRPVSDEGKRLRLAFFSSLPSTLSSLTFDYLGIDSP
SLVNLLYCIPQLIKLYLTRCPREVVVGAIKAIGRPPANRVESSLPSNVLPNLCALSILDTRSKVLDALIFIEMLE
ALHAAGPRPKQFLLNTNSDVDWPSDALGEVRALLLSGMDVKITFTRGDSTFSVPSG*
Coding >AgabiH39|019370
ATGTCCACTGCCGAATGTCCCCGCTGTGGTTATCATCTTGCGACAGAATTAAAGGAAGAGGTCTCTGCCCTTGGA
GCAGAGGTCCGCCGTCTCGAGGACCTGATTCCTCGCCTTCAAGAGGAGAAAGCTGTTCTTTTGCGCAGGATAAAC
AGTGCACAAGAAAGAACAAGACACCTACCGTTCGAAGTGTTGTCAAACATCTTCCTGTTTGCCCGTCCGCCGATT
GACTTCACCGCCTGCGAGCCGAGATTATATCACTCTACGGACCCGGACTATCCACTGCTAATGGGCCATTTCGAT
CCCGATGAGGACTTCCATCACACTTTAGCTGCTGTTTCCCATCGTTGGCGCCAGGTCGCGTTGTCGACACCTCAA
CTCTGGACTTCTATCTCACTTCATGTTCTTAATACATTCACCGGATTCAACACATCGCTCCTTGATCTATATTTC
GAACATGCGCGTGACCTTCCGGTCTCCGTCCAAATGGACTTCACTAATCCTGCTCTGCCTCTTGCAGAATTCATA
TTCGACGAGAATGCGGATAAAGTACAAAGCCTCAATCTCATACGGCCACCAGCTGAGTGGTTTTATTCTACCCGC
AGCAACTTTCCACATTGCGATTCTGTGACGATTTACTGGTTAACTCCGGAGGATGAGAGTAATTTCTTCCATGAT
TTTGAGGAGTTTACTTCTCTTCACCAAGTAAAACTCAGCGGCAGTGGCTTCACATTCACATTGCCTGCGTCAGTC
TCTGCTCTACAATTGTCCCACACCGATCTAACTGGGTGCCTGGAATCACTCACGAGATCACCAAATCTTATCAGA
TTGGACATTACCAATGCCAGGACAACCGCTTTTTCTTCTGGGTTGTTCAGTGTTGCCATCGAACCCATAGTACTT
CATCGTCTTGAAATTTTGACTTGGAGCGAGATGGTGGTAGATGGAAACCATGATTTTCTGCGCTATGCTCGTTTT
GTTAATCTTACCACTTTAGAGTGGGATGAATACAGAACCTATCATAGGCCCGTTTCTGACGAAGGGAAAAGGTTA
CGACTTGCCTTCTTTTCTTCATTACCATCCACTCTTTCTTCCCTGACCTTCGACTACCTCGGCATTGATTCTCCG
AGTCTTGTCAATCTACTGTACTGTATTCCTCAGCTCATCAAACTCTACTTGACCAGGTGTCCTCGGGAGGTAGTT
GTAGGTGCTATCAAGGCGATTGGTCGACCTCCGGCAAACAGAGTGGAATCATCTTTACCCTCAAACGTTCTCCCG
AACCTTTGTGCGTTATCAATTTTAGACACCAGGTCTAAGGTACTAGACGCGCTTATATTCATTGAAATGCTGGAG
GCTCTGCATGCCGCCGGCCCTCGACCGAAACAATTTCTTTTGAATACCAATTCGGATGTTGATTGGCCATCGGAT
GCCTTGGGCGAGGTTCGGGCTCTATTGTTGTCTGGTATGGATGTGAAGATCACTTTTACTCGTGGTGACTCCACA
TTTTCGGTACCCTCAGGCTAA
Transcript >AgabiH39|019370
ATGTCCACTGCCGAATGTCCCCGCTGTGGTTATCATCTTGCGACAGAATTAAAGGAAGAGGTCTCTGCCCTTGGA
GCAGAGGTCCGCCGTCTCGAGGACCTGATTCCTCGCCTTCAAGAGGAGAAAGCTGTTCTTTTGCGCAGGATAAAC
AGTGCACAAGAAAGAACAAGACACCTACCGTTCGAAGTGTTGTCAAACATCTTCCTGTTTGCCCGTCCGCCGATT
GACTTCACCGCCTGCGAGCCGAGATTATATCACTCTACGGACCCGGACTATCCACTGCTAATGGGCCATTTCGAT
CCCGATGAGGACTTCCATCACACTTTAGCTGCTGTTTCCCATCGTTGGCGCCAGGTCGCGTTGTCGACACCTCAA
CTCTGGACTTCTATCTCACTTCATGTTCTTAATACATTCACCGGATTCAACACATCGCTCCTTGATCTATATTTC
GAACATGCGCGTGACCTTCCGGTCTCCGTCCAAATGGACTTCACTAATCCTGCTCTGCCTCTTGCAGAATTCATA
TTCGACGAGAATGCGGATAAAGTACAAAGCCTCAATCTCATACGGCCACCAGCTGAGTGGTTTTATTCTACCCGC
AGCAACTTTCCACATTGCGATTCTGTGACGATTTACTGGTTAACTCCGGAGGATGAGAGTAATTTCTTCCATGAT
TTTGAGGAGTTTACTTCTCTTCACCAAGTAAAACTCAGCGGCAGTGGCTTCACATTCACATTGCCTGCGTCAGTC
TCTGCTCTACAATTGTCCCACACCGATCTAACTGGGTGCCTGGAATCACTCACGAGATCACCAAATCTTATCAGA
TTGGACATTACCAATGCCAGGACAACCGCTTTTTCTTCTGGGTTGTTCAGTGTTGCCATCGAACCCATAGTACTT
CATCGTCTTGAAATTTTGACTTGGAGCGAGATGGTGGTAGATGGAAACCATGATTTTCTGCGCTATGCTCGTTTT
GTTAATCTTACCACTTTAGAGTGGGATGAATACAGAACCTATCATAGGCCCGTTTCTGACGAAGGGAAAAGGTTA
CGACTTGCCTTCTTTTCTTCATTACCATCCACTCTTTCTTCCCTGACCTTCGACTACCTCGGCATTGATTCTCCG
AGTCTTGTCAATCTACTGTACTGTATTCCTCAGCTCATCAAACTCTACTTGACCAGGTGTCCTCGGGAGGTAGTT
GTAGGTGCTATCAAGGCGATTGGTCGACCTCCGGCAAACAGAGTGGAATCATCTTTACCCTCAAACGTTCTCCCG
AACCTTTGTGCGTTATCAATTTTAGACACCAGGTCTAAGGTACTAGACGCGCTTATATTCATTGAAATGCTGGAG
GCTCTGCATGCCGCCGGCCCTCGACCGAAACAATTTCTTTTGAATACCAATTCGGATGTTGATTGGCCATCGGAT
GCCTTGGGCGAGGTTCGGGCTCTATTGTTGTCTGGTATGGATGTGAAGATCACTTTTACTCGTGGTGACTCCACA
TTTTCGGTACCCTCAGGCTAA
Gene >AgabiH39|019370
ATGTCCACTGCCGAATGTCCCCGCTGTGGTTATCATCTTGCGACAGAATTAAAGGTATGCTGCCCTCGACGTTCC
ATCTCGCAAACAATCTGGCTGAACAGGGTCGTCAGGAAGAGGTCTCTGCCCTTGGAGCAGAGGTCCGCCGTCTCG
AGGACCTGATTCCTCGCCTTCAAGAGGAGAAAGCTGTTCTTTTGCGCAGGATAAACAGTGCACAAGAAAGAACAA
GACACCTACCGTTCGAAGTGTTGTCAAACATCTTCCTGTTTGCCCGTCCGCCGATTGACTTCACCGCCTGCGAGC
CGAGATTATATCACTCTACGGACCCGGACTATCCACTGCTAATGGGCCATTTCGATCCCGATGAGGACTTCCATC
ACACTTTAGCTGCTGTTTCCCATCGTTGGCGCCAGGTCGCGTTGTCGACACCTCAACTCTGGACTTCTATCTCAC
TTCATGTTCTTAATACATTCACCGGATTCAACACATCGCTCCTTGATCTATATTTCGAACATGCGCGTGACCTTC
CGGTCTCCGTCCAAATGGACTTCACTAATCCTGCTCTGGTGTGGGATAAATTTCCTTCAAGACGTTCAGACTTCC
TGACGCGCCTCGAGCCTCTTGCAGAATTCATATTCGACGAGAATGCGGATAAAGTACAAAGCCTCAATCTCATAC
GGCCACCAGCTGAGTGGTTTTATTCTACCCGCAGCAACTTTCCACATTGCGATTCTGTGACGATTTACTGGTTAA
CTCCGGAGGATGAGAGTAATTTCTTCCATGATTTTGAGGAGTTTACTTCTCTTCACCAAGTAAAACTCAGCGGCA
GTGGCTTCACATTCACATTGCCTGCGTCAGTCTCTGCTCTACAATTGTCCCACACCGATCTAACTGGGTGCCTGG
AATCACTCACGAGATCACCAAATCTTATCAGATTGGACATTACCAATGCCAGGACAACCGCTTTTTCTTCTGGGT
TGTTCAGTGTTGCCATCGAACCCATAGTACTTCATCGTCTTGAAATTTTGACTTGGAGCGAGATGGTGGTAGATG
GAAACCATGATTTTCTGCGCTATGCTCGTTTTGTTAATCTTACCACTTTAGAGTGGGATGAATACAGAACCTATC
ATAGGCCCGTTTCTGACGAAGGGAAAAGGTTACGACTTGCCTTCTTTTCTTCATTACCATCCACTCTTTCTTCCC
TGACCTTCGACTACCTCGGCATTGATTCTCCGAGTCTTGTCAATCTACTGTACTGTATTCCTCAGCTCATCAAAC
TCTACTTGACCAGGTGTCCTCGGGAGGTAGTTGTAGGTGCTATCAAGGCGATTGGTCGACCTCCGGCAAACAGAG
TGGAATCATCTTTACCCTCAAACGTTCTCCCGAACCTTTGTGCGTTATCAATTTTAGACACCAGGTCTAAGGTAC
TAGACGCGCTTATATTCATTGAAATGCTGGAGGCTCTGCATGCCGCCGGCCCTCGACCGAAACAATTTCTTTTGA
ATACCAATTCGGATGTTGATTGGCCATCGGATGCCTTGGGCGAGGTTCGGGCTCTATTGTTGTCTGGTATGGATG
TGAAGATCACTTTTACTCGTGGTGACTCCACATTTTCGGTACCCTCAGGCTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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