Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH39|012330
Gene name
Locationscaffold_01:2982406..2983169
Strand+
Gene length (bp)763
Transcript length (bp)669
Coding sequence length (bp)669
Protein length (aa) 223

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 9.0E-09 63 105
PF00646 F-box F-box domain 2.5E-06 64 93

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID1
Orthogroup3360
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|012330 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|012330
Rhodonia placenta FPRL280 RhoplFPRL280|231_11

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH39|012330
MSLLFTVLRSASQHESDDDDLINVVSPANTRPSSPTLKGAAARPIPKPLLLNKSRSRTDPLRVLPTELSQRIFSR
LRLSDLAKCSLVSKKWNRSQTINYVWFQHYRRDNFHDESLPPGKWSKRESKQNWRLVHLKTLRERSPPSTPFSRY
SSAYNSGYQTPREMKEEQWRLEAETTSKPGKLEMREMYKELGGRKARSKAKLGSSGPIRDRGGWADGDDGWP*
Coding >AgabiH39|012330
ATGAGTCTCCTCTTCACCGTCCTCCGCTCCGCCTCCCAGCACGAGAGCGACGACGACGACCTCATCAACGTCGTC
TCCCCCGCCAACACCCGCCCTTCCTCTCCAACCCTCAAGGGCGCTGCCGCCCGCCCCATCCCCAAACCTCTTCTC
CTCAACAAATCCCGCAGCCGCACAGATCCTCTCCGTGTGCTCCCCACAGAACTCTCCCAGCGCATCTTCTCTCGC
CTGCGCTTAAGCGATCTCGCAAAATGCTCTCTTGTATCGAAAAAATGGAATCGGAGCCAGACAATCAACTATGTT
TGGTTTCAGCACTATCGGAGAGACAACTTTCACGATGAAAGCCTGCCACCGGGCAAGTGGTCCAAGCGCGAATCC
AAACAGAACTGGCGTCTGGTCCATCTCAAGACACTACGGGAACGTTCTCCTCCTTCCACCCCCTTCTCACGTTAC
TCATCCGCTTACAACTCCGGTTATCAAACACCTCGCGAGATGAAAGAAGAACAATGGCGTCTCGAGGCCGAGACT
ACTTCCAAACCTGGTAAACTCGAGATGCGTGAAATGTACAAAGAGCTGGGCGGGCGCAAAGCTCGCTCAAAAGCA
AAATTGGGCAGTTCAGGCCCCATTCGGGATAGAGGAGGATGGGCCGATGGTGATGATGGATGGCCCTAG
Transcript >AgabiH39|012330
ATGAGTCTCCTCTTCACCGTCCTCCGCTCCGCCTCCCAGCACGAGAGCGACGACGACGACCTCATCAACGTCGTC
TCCCCCGCCAACACCCGCCCTTCCTCTCCAACCCTCAAGGGCGCTGCCGCCCGCCCCATCCCCAAACCTCTTCTC
CTCAACAAATCCCGCAGCCGCACAGATCCTCTCCGTGTGCTCCCCACAGAACTCTCCCAGCGCATCTTCTCTCGC
CTGCGCTTAAGCGATCTCGCAAAATGCTCTCTTGTATCGAAAAAATGGAATCGGAGCCAGACAATCAACTATGTT
TGGTTTCAGCACTATCGGAGAGACAACTTTCACGATGAAAGCCTGCCACCGGGCAAGTGGTCCAAGCGCGAATCC
AAACAGAACTGGCGTCTGGTCCATCTCAAGACACTACGGGAACGTTCTCCTCCTTCCACCCCCTTCTCACGTTAC
TCATCCGCTTACAACTCCGGTTATCAAACACCTCGCGAGATGAAAGAAGAACAATGGCGTCTCGAGGCCGAGACT
ACTTCCAAACCTGGTAAACTCGAGATGCGTGAAATGTACAAAGAGCTGGGCGGGCGCAAAGCTCGCTCAAAAGCA
AAATTGGGCAGTTCAGGCCCCATTCGGGATAGAGGAGGATGGGCCGATGGTGATGATGGATGGCCCTAG
Gene >AgabiH39|012330
ATGAGTCTCCTCTTCACCGTCCTCCGCTCCGCCTCCCAGCACGAGAGCGACGACGACGACCTCATCAACGTCGTC
TCCCCCGCCAACACCCGCCCTTCCTCTCCAACCCTCAAGGGCGCTGCCGCCCGCCCCATCCCCAAACCTCTTCTC
CTCAACAAATCCCGCAGCCGCACAGATCCTCTCCGTGTGCTCCCCACAGAACTCTCCCAGCGCATCTTCTCTCGC
CTGCGCTTAAGCGATCTCGCAAAATGCTCTCTTGTATCGAAAAAATGGAATCGGAGCCAGACAATCAACTATGGT
CAGTCAACACCGTTTTTCGCATTTCTCCTTTAACCCTTCTCCAGTTTGGTTTCAGCACTATCGGAGAGACAACTT
TCACGATGAAAGCCTGCCACCGGGCAAGTGGTCCAAGCGCGAATCCAAACAGAACTGGGTCTGTCTTTTTTCCCC
AATGACCACATCTCTTTCTGACTGCATGCAGCGTCTGGTCCATCTCAAGACACTACGGGAACGTTCTCCTCCTTC
CACCCCCTTCTCACGTTACTCATCCGCTTACAACTCCGGTTATCAAACACCTCGCGAGATGAAAGAAGAACAATG
GCGTCTCGAGGCCGAGACTACTTCCAAACCTGGTAAACTCGAGATGCGTGAAATGTACAAAGAGCTGGGCGGGCG
CAAAGCTCGCTCAAAAGCAAAATTGGGCAGTTCAGGCCCCATTCGGGATAGAGGAGGATGGGCCGATGGTGATGA
TGGATGGCCCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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