Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF03732
Short nameRetrotrans_gag
Long nameRetrotransposon gag protein
Proteins with at least one of this domain143
Total domain count143
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
AgabiH39|016520 PF03732 Retrotrans_gag Retrotransposon gag protein 4.7E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH39|017950 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-08 142 215
PF00098 zf-CCHC Zinc knuckle 7.0E-04 295 309
AgabiH39|018080 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-06 105 192
PF00098 zf-CCHC Zinc knuckle 3.1E-06 278 293
AgabiH39|018370 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|019460 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|039680 PF03732 Retrotrans_gag Retrotransposon gag protein 6.3E-06 145 201
AgabiH39|081720 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.8E-10 23 146
PF16297 DUF4939 Domain of unknown function (DUF4939) 1.6E-08 24 109
PF03732 Retrotrans_gag Retrotransposon gag protein 5.9E-07 65 146
AgabiH39|081760 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|082300 PF03732 Retrotrans_gag Retrotransposon gag protein 2.7E-08 145 216
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH39|082330 PF03732 Retrotrans_gag Retrotransposon gag protein 8.9E-08 143 214
PF00098 zf-CCHC Zinc knuckle 7.7E-04 294 308
PF00098 zf-CCHC Zinc knuckle 2.0E-03 322 337
AgabiH39|094270 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-07 146 213
PF00098 zf-CCHC Zinc knuckle 9.4E-07 294 311
AgabiH39|117620 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-08 144 215
PF00098 zf-CCHC Zinc knuckle 3.8E-04 295 309
AgabiH39|117730 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.0E-08 170 305
PF03732 Retrotrans_gag Retrotransposon gag protein 8.7E-10 195 282
AgabiH39|118350 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 5.3E-10 29 164
PF03732 Retrotrans_gag Retrotransposon gag protein 6.0E-10 54 141
AgabiH39|119510 PF03732 Retrotrans_gag Retrotransposon gag protein 3.0E-06 101 188
PF00098 zf-CCHC Zinc knuckle 3.1E-06 274 289
AgabiH39|203400 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 94 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|203800 PF03732 Retrotrans_gag Retrotransposon gag protein 3.5E-08 145 216
PF00098 zf-CCHC Zinc knuckle 2.1E-03 295 311
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH39|204300 PF03732 Retrotrans_gag Retrotransposon gag protein 2.3E-05 108 195
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-24 830 991
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.4E-30 1054 1154
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.2E-33 1080 1185
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.6E-20 1299 1357
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 2.8E-13 1671 1720
AgabiH39|204900 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|208700 PF03732 Retrotrans_gag Retrotransposon gag protein 2.3E-05 108 195
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-24 830 991
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.3E-30 1054 1154
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-33 1080 1185
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.6E-20 1299 1357
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1671 1720
AgabiH39|208800 PF03732 Retrotrans_gag Retrotransposon gag protein 2.3E-05 108 195
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-24 830 991
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.3E-30 1054 1154
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-33 1080 1185
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.6E-20 1299 1357
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1671 1720
AgabiH39|208900 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-05 282 369
AgabiH39|209300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|210500 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|216200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-08 144 215
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH39|217300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.0E-08 144 215
AgabiH39|220000 PF03732 Retrotrans_gag Retrotransposon gag protein 9.4E-08 144 215
PF00098 zf-CCHC Zinc knuckle 4.1E-03 295 309
PF00098 zf-CCHC Zinc knuckle 5.9E-05 323 338
PF13650 Asp_protease_2 Aspartyl protease 2.1E-05 379 469
PF08284 RVP_2 Retroviral aspartyl protease 2.2E-08 388 487
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 5.8E-19 609 768
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 3.0E-37 834 930
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 5.4E-38 862 964
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.9E-19 1078 1134
PF00665 rve Integrase core domain 1.8E-11 1152 1248
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.6E-07 1448 1487
AgabiH39|225100 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-08 144 215
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH39|225700 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
AgabiH39|225800 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 3.7E-10 29 164
PF03732 Retrotrans_gag Retrotransposon gag protein 6.8E-10 54 141
AgabiH39|228600 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH39|229000 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH39|230400 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|230700 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|231100 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-07 156 222
PF00098 zf-CCHC Zinc knuckle 1.9E-07 303 320
PF00098 zf-CCHC Zinc knuckle 1.9E-04 326 341
AgabiH39|233200 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|242100 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH39|250500 PF03732 Retrotrans_gag Retrotransposon gag protein 1.3E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|251500 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|270800 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|271300 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|271500 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|282100 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|284500 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-07 54 125
PF00098 zf-CCHC Zinc knuckle 4.4E-03 205 219
PF00098 zf-CCHC Zinc knuckle 6.1E-05 233 248
AgabiH39|284600 PF03732 Retrotrans_gag Retrotransposon gag protein 4.6E-08 72 143
PF00098 zf-CCHC Zinc knuckle 4.6E-03 223 237
PF00098 zf-CCHC Zinc knuckle 1.3E-05 251 266
AgabiH39|287300 PF03732 Retrotrans_gag Retrotransposon gag protein 4.8E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH39|292600 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH39|299600 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|303100 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|303500 PF03732 Retrotrans_gag Retrotransposon gag protein 2.2E-08 144 216
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH39|309900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|310400 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH39|310800 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-08 145 216
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH39|317800 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|318000 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.7E-06 281 296
AgabiH39|318500 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|318800 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|319000 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|324100 PF03732 Retrotrans_gag Retrotransposon gag protein 2.7E-08 145 215
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH39|324400 PF03732 Retrotrans_gag Retrotransposon gag protein 2.5E-07 156 222
PF00098 zf-CCHC Zinc knuckle 9.7E-07 303 320
PF00098 zf-CCHC Zinc knuckle 1.9E-04 326 341
AgabiH39|328500 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|332400 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|338000 PF03732 Retrotrans_gag Retrotransposon gag protein 2.8E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 1.2E-04 323 338
AgabiH39|338200 PF03732 Retrotrans_gag Retrotransposon gag protein 6.3E-05 108 195
PF00098 zf-CCHC Zinc knuckle 2.1E-05 281 296
PF08284 RVP_2 Retroviral aspartyl protease 1.3E-04 376 476
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-24 835 996
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 4.8E-30 1059 1159
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 2.3E-33 1085 1190
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.7E-20 1304 1362
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1676 1725
AgabiH39|339200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|340800 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|341000 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|350900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|353600 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|353800 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|354600 PF03732 Retrotrans_gag Retrotransposon gag protein 1.1E-05 92 179
PF00098 zf-CCHC Zinc knuckle 2.8E-05 265 280
AgabiH39|355500 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|356000 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 109 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 282 297
AgabiH39|361200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|363800 PF03732 Retrotrans_gag Retrotransposon gag protein 2.5E-07 135 201
PF00098 zf-CCHC Zinc knuckle 9.0E-07 282 299
PF00098 zf-CCHC Zinc knuckle 1.7E-04 305 320
AgabiH39|365400 PF03732 Retrotrans_gag Retrotransposon gag protein 1.8E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH39|365800 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-07 156 222
PF00098 zf-CCHC Zinc knuckle 9.7E-07 303 320
PF00098 zf-CCHC Zinc knuckle 1.9E-04 326 341
AgabiH39|366300 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-07 155 221
PF00098 zf-CCHC Zinc knuckle 9.6E-07 302 319
PF00098 zf-CCHC Zinc knuckle 5.5E-03 325 340
AgabiH39|367200 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-07 155 221
PF00098 zf-CCHC Zinc knuckle 9.6E-07 302 319
PF00098 zf-CCHC Zinc knuckle 5.5E-03 325 340
AgabiH39|388300 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|395000 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|397500 PF03732 Retrotrans_gag Retrotransposon gag protein 2.5E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.9E-04 327 342
AgabiH39|407300 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-07 157 223
PF00098 zf-CCHC Zinc knuckle 9.7E-07 304 321
PF00098 zf-CCHC Zinc knuckle 1.9E-04 327 342
AgabiH39|415500 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|416300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-06 108 195
AgabiH39|416900 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 143 211
AgabiH39|417000 PF03732 Retrotrans_gag Retrotransposon gag protein 4.8E-06 135 199
PF00098 zf-CCHC Zinc knuckle 5.6E-03 279 293
PF00098 zf-CCHC Zinc knuckle 1.2E-05 307 322
AgabiH39|417500 PF03732 Retrotrans_gag Retrotransposon gag protein 1.0E-07 144 215
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH39|418100 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 108 195
PF00098 zf-CCHC Zinc knuckle 2.9E-04 277 292
AgabiH39|418800 PF03732 Retrotrans_gag Retrotransposon gag protein 2.9E-05 92 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH39|421600 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|423300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.2E-05 156 222
PF00098 zf-CCHC Zinc knuckle 9.7E-07 303 320
PF00098 zf-CCHC Zinc knuckle 4.6E-04 326 341
AgabiH39|424700 PF03732 Retrotrans_gag Retrotransposon gag protein 4.4E-05 130 217
PF00098 zf-CCHC Zinc knuckle 4.0E-06 303 318
AgabiH39|425000 PF03732 Retrotrans_gag Retrotransposon gag protein 4.4E-05 130 217
PF00098 zf-CCHC Zinc knuckle 4.0E-06 303 318
AgabiH39|425700 PF03732 Retrotrans_gag Retrotransposon gag protein 1.3E-05 108 179
AgabiH39|431300 PF03732 Retrotrans_gag Retrotransposon gag protein 8.1E-06 144 198
AgabiH39|440200 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 5.3E-07 451 573
PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-13 463 560
AgabiH39|442500 PF03732 Retrotrans_gag Retrotransposon gag protein 3.2E-08 145 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 7.7E-06 323 338
AgabiH39|443500 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|444000 PF03732 Retrotrans_gag Retrotransposon gag protein 3.8E-08 144 215
PF00098 zf-CCHC Zinc knuckle 3.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH39|444300 PF03732 Retrotrans_gag Retrotransposon gag protein 1.7E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH39|444700 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|458300 PF03732 Retrotrans_gag Retrotransposon gag protein 3.5E-08 145 216
PF00098 zf-CCHC Zinc knuckle 7.7E-04 295 309
PF00098 zf-CCHC Zinc knuckle 8.7E-05 322 337
AgabiH39|462700 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 4.7E-09 29 164
PF03732 Retrotrans_gag Retrotransposon gag protein 4.7E-10 54 141
AgabiH39|462900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|463600 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|465500 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-08 145 216
PF00098 zf-CCHC Zinc knuckle 2.7E-04 295 311
PF00098 zf-CCHC Zinc knuckle 8.3E-05 323 338
AgabiH39|468800 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|471700 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|475400 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|475600 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|476200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 94 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|483000 PF03732 Retrotrans_gag Retrotransposon gag protein 3.1E-08 143 214
PF00098 zf-CCHC Zinc knuckle 7.7E-04 293 307
PF00098 zf-CCHC Zinc knuckle 1.6E-05 321 336
AgabiH39|483500 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|483900 PF03732 Retrotrans_gag Retrotransposon gag protein 2.6E-08 145 216
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
AgabiH39|484600 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|484700 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 109 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 282 297
AgabiH39|488200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|490600 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|490900 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|491100 PF03732 Retrotrans_gag Retrotransposon gag protein 5.2E-05 14 76
PF00098 zf-CCHC Zinc knuckle 1.8E-06 162 177
AgabiH39|501500 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 1.6E-10 29 165
PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-09 54 140
AgabiH39|501700 PF03732 Retrotrans_gag Retrotransposon gag protein 4.0E-05 108 195
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.7E-24 821 982
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 2.0E-30 1045 1145
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.0E-33 1071 1176
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.7E-20 1290 1348
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1662 1711
AgabiH39|503600 PF16297 DUF4939 Domain of unknown function (DUF4939) 7.5E-08 169 261
PF19259 Ty3_capsid Ty3 transposon capsid-like protein 2.3E-11 169 340
PF03732 Retrotrans_gag Retrotransposon gag protein 3.5E-08 217 314
AgabiH39|510500 PF03732 Retrotrans_gag Retrotransposon gag protein 2.3E-05 108 195
PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) 4.8E-24 830 991
PF17919 RT_RNaseH_2 RNase H-like domain found in reverse transcriptase 5.4E-30 1054 1154
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.2E-33 1080 1185
PF17921 Integrase_H2C2 Integrase zinc binding domain 6.6E-20 1299 1357
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.5E-13 1671 1720
AgabiH39|513600 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|513900 PF03732 Retrotrans_gag Retrotransposon gag protein 5.7E-06 108 195
AgabiH39|514400 PF03732 Retrotrans_gag Retrotransposon gag protein 2.0E-05 109 196
PF00098 zf-CCHC Zinc knuckle 3.1E-06 282 297
AgabiH39|518200 PF03732 Retrotrans_gag Retrotransposon gag protein 1.6E-05 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|519900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.0E-08 144 215
PF00098 zf-CCHC Zinc knuckle 7.8E-04 295 309
PF00098 zf-CCHC Zinc knuckle 1.6E-05 323 338
AgabiH39|520700 PF19259 Ty3_capsid Ty3 transposon capsid-like protein 3.7E-10 29 164
PF03732 Retrotrans_gag Retrotransposon gag protein 6.8E-10 54 141
AgabiH39|527300 PF03732 Retrotrans_gag Retrotransposon gag protein 5.2E-06 108 195
AgabiH39|532400 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|533900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.5E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|534000 PF03732 Retrotrans_gag Retrotransposon gag protein 1.9E-05 107 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|535100 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|535300 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296
AgabiH39|542000 PF03732 Retrotrans_gag Retrotransposon gag protein 6.6E-08 144 214
PF00098 zf-CCHC Zinc knuckle 2.7E-04 293 309
PF00098 zf-CCHC Zinc knuckle 8.3E-05 321 336
AgabiH39|542400 PF03732 Retrotrans_gag Retrotransposon gag protein 9.0E-07 107 194
AgabiH39|543700 PF03732 Retrotrans_gag Retrotransposon gag protein 2.1E-08 144 216
PF00098 zf-CCHC Zinc knuckle 5.9E-03 295 309
PF00098 zf-CCHC Zinc knuckle 7.7E-06 323 338
AgabiH39|546900 PF03732 Retrotrans_gag Retrotransposon gag protein 1.7E-06 107 194
PF00098 zf-CCHC Zinc knuckle 3.1E-06 280 295
AgabiH39|548700 PF03732 Retrotrans_gag Retrotransposon gag protein 1.8E-08 144 215
PF00098 zf-CCHC Zinc knuckle 2.7E-04 295 311
PF00098 zf-CCHC Zinc knuckle 1.6E-05 322 337
AgabiH39|549000 PF03732 Retrotrans_gag Retrotransposon gag protein 9.6E-06 108 195
PF00098 zf-CCHC Zinc knuckle 3.1E-06 281 296

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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