Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|781100
Gene name
Locationscaffold_13:119572..120106
Strand-
Gene length (bp)534
Transcript length (bp)381
Coding sequence length (bp)381
Protein length (aa) 127

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 4.8E-20 45 111

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1 27 126 2.0E-28
sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1 39 126 2.0E-28
sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1 33 126 9.0E-27
sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1 33 126 2.0E-26
sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1 38 122 5.0E-23
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Swissprot ID Swissprot Description Start End E-value
sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1 27 126 2.0E-28
sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1 39 126 2.0E-28
sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1 33 126 9.0E-27
sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1 33 126 2.0E-26
sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1 38 122 5.0E-23
sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1 SV=2 38 116 7.0E-23
sp|Q0W8R9|RUXX_METAR Putative snRNP Sm-like protein OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=UNCMA_29510 PE=3 SV=1 46 111 9.0E-10
sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SNRPG PE=1 SV=1 45 113 4.0E-09
sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0875 PE=1 SV=1 46 116 9.0E-09
sp|Q5RCP3|LSM8_PONAB U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3 46 113 1.0E-08
sp|Q6ZWM4|LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3 46 113 1.0E-08
sp|O95777|LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3 46 113 1.0E-08
sp|Q3ZCE0|LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3 46 113 1.0E-08
sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1 45 113 5.0E-08
sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1 46 111 1.0E-07
sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1 45 114 2.0E-07
sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0525a PE=3 SV=1 38 111 2.0E-07
sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1 45 113 6.0E-07
sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1 SV=1 45 113 6.0E-07
sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1 45 113 6.0E-07
sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1 45 113 6.0E-07
sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1 46 113 1.0E-06
sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1 46 111 1.0E-06
sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans GN=snr-7 PE=3 SV=1 45 111 2.0E-06
sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum GN=snrpG PE=3 SV=1 45 114 3.0E-06
sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1 SV=1 44 118 3.0E-06
sp|A8MWD9|RUXGL_HUMAN Putative small nuclear ribonucleoprotein G-like protein 15 OS=Homo sapiens GN=SNRPGP15 PE=5 SV=2 45 113 4.0E-06
sp|Q8VYI0|LSM8_ARATH Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1 46 113 5.0E-06
sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=Mbur_2181 PE=3 SV=1 46 111 5.0E-06
sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0339 PE=3 SV=1 46 111 7.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|781100
MADRNRPSVRGIIRGVPLHRPRGGPPPSSGLAAQDNKPKREAILDLAKYVNEPIRVKFMGGREVVGTLKGYDQLL
NLVLDDVQEQIQEPEPRTRSLGLVVLRGPLITIVSPVDGSEEIANPFLAQE*
Coding >Agabi119p4|781100
ATGGCTGATCGCAATCGCCCCTCTGTCCGTGGCATCATCCGCGGTGTGCCCCTCCACAGACCCCGCGGTGGCCCA
CCTCCGTCGTCGGGCCTCGCTGCCCAGGACAACAAGCCCAAGCGCGAGGCCATTCTCGATCTCGCAAAATACGTC
AATGAGCCCATCCGCGTCAAGTTTATGGGCGGACGCGAAGTCGTAGGCACCCTCAAAGGCTACGATCAGCTATTA
AACCTTGTACTCGACGATGTCCAAGAACAAATCCAAGAACCAGAACCCCGCACCCGCTCTCTCGGCCTCGTCGTT
CTTCGAGGGCCCCTCATCACCATCGTCAGTCCTGTAGACGGCTCAGAAGAAATCGCCAACCCTTTCTTGGCACAA
GAGTAA
Transcript >Agabi119p4|781100
ATGGCTGATCGCAATCGCCCCTCTGTCCGTGGCATCATCCGCGGTGTGCCCCTCCACAGACCCCGCGGTGGCCCA
CCTCCGTCGTCGGGCCTCGCTGCCCAGGACAACAAGCCCAAGCGCGAGGCCATTCTCGATCTCGCAAAATACGTC
AATGAGCCCATCCGCGTCAAGTTTATGGGCGGACGCGAAGTCGTAGGCACCCTCAAAGGCTACGATCAGCTATTA
AACCTTGTACTCGACGATGTCCAAGAACAAATCCAAGAACCAGAACCCCGCACCCGCTCTCTCGGCCTCGTCGTT
CTTCGAGGGCCCCTCATCACCATCGTCAGTCCTGTAGACGGCTCAGAAGAAATCGCCAACCCTTTCTTGGCACAA
GAGTAA
Gene >Agabi119p4|781100
ATGGCTGATCGCGTCCGTCTCTCCTCTTTGTTTCTTTTTATCTCCTCATCTCGCTTCACAGAATCGCCCCTCTGT
CCGTGGCATCATCCGCGGTGTGCCCCTCCACAGACCCCGCGGTGGCCCACCTCCGTCGTCGGGCCTCGCTGCCCA
GGACAACAAGCCCAAGCGCGAGGCCATTCTCGATCTCGCAAAATACGTCAATGAGCCCATCCGCGTCAAGTTTAT
GGGCGGACGCGAAGGTCCGTCGCTCTCTCCTCTCTCTCCCCACCCCTCTCATCTCTCTTGCAGTCGTAGGCACCC
TCAAAGGCTACGATCAGCTATTAAACCTTGTACTCGACGATGTCCAAGAACAAATCCAAGGCAACCCAACATCCT
TTCTTTATTTATTCTTATTCAACCTGACATCCATCCACAGAACCAGAACCCCGCACCCGCTCTCTCGGCCTCGTC
GTTCTTCGAGGGCCCCTCATCACCATCGTCAGTCCTGTAGACGGCTCAGAAGAAATCGCCAACCCTTTCTTGGCA
CAAGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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