© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|779400 |
| Gene name | |
| Location | scaffold_12:1538057..1538448 |
| Strand | + |
| Gene length (bp) | 391 |
| Transcript length (bp) | 288 |
| Coding sequence length (bp) | 288 |
| Protein length (aa) | 96 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01423 | LSM | LSM domain | 7.6E-18 | 26 | 90 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B0DWN3|LSM6_LACBS | U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1 | 18 | 95 | 2.0E-45 |
| sp|Q4PG71|LSM6_USTMA | U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2 | 12 | 94 | 8.0E-35 |
| sp|P62313|LSM6_MOUSE | U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1 | 23 | 93 | 8.0E-34 |
| sp|P62312|LSM6_HUMAN | U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1 | 23 | 93 | 8.0E-34 |
| sp|A8NHT8|LSM6_COPC7 | U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=LSM6 PE=3 SV=2 | 20 | 95 | 9.0E-34 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B0DWN3|LSM6_LACBS | U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1 | 18 | 95 | 2.0E-45 |
| sp|Q4PG71|LSM6_USTMA | U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2 | 12 | 94 | 8.0E-35 |
| sp|P62313|LSM6_MOUSE | U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1 | 23 | 93 | 8.0E-34 |
| sp|P62312|LSM6_HUMAN | U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1 | 23 | 93 | 8.0E-34 |
| sp|A8NHT8|LSM6_COPC7 | U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=LSM6 PE=3 SV=2 | 20 | 95 | 9.0E-34 |
| sp|Q9UUI1|LSM6_SCHPO | U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm6 PE=1 SV=1 | 23 | 93 | 2.0E-33 |
| sp|O22823|LSM6B_ARATH | Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1 | 16 | 93 | 1.0E-32 |
| sp|Q9M1Z3|LSM6A_ARATH | Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1 | 21 | 90 | 2.0E-32 |
| sp|P0CR24|LSM6_CRYNJ | U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=LSM6 PE=3 SV=1 | 8 | 95 | 7.0E-31 |
| sp|P0CR25|LSM6_CRYNB | U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=LSM6 PE=3 SV=1 | 8 | 95 | 7.0E-31 |
| sp|Q2HAN0|LSM6_CHAGB | U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=LSM6 PE=3 SV=2 | 24 | 91 | 3.0E-23 |
| sp|A7UXE4|LSM6_NEUCR | U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=snr-6 PE=3 SV=2 | 24 | 91 | 3.0E-23 |
| sp|A1DM27|LSM6_NEOFI | U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=lsm6 PE=3 SV=2 | 24 | 91 | 1.0E-22 |
| sp|A6R363|LSM6_AJECN | U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=LSM6 PE=3 SV=1 | 24 | 91 | 1.0E-22 |
| sp|Q1DRN0|LSM6_COCIM | U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis (strain RS) GN=LSM6 PE=3 SV=1 | 24 | 91 | 2.0E-22 |
| sp|Q552U1|LSM6_DICDI | Probable U6 snRNA-associated Sm-like protein LSm6 OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1 | 23 | 91 | 2.0E-22 |
| sp|Q4WNI0|LSM6_ASPFU | U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=lsm6 PE=3 SV=2 | 24 | 91 | 4.0E-22 |
| sp|A4RQ29|LSM6_MAGO7 | U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3 SV=1 | 24 | 92 | 2.0E-21 |
| sp|A1CE19|LSM6_ASPCL | U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=lsm6 PE=3 SV=2 | 24 | 91 | 2.0E-21 |
| sp|Q0UWI9|LSM6_PHANO | U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=LSM6 PE=3 SV=2 | 11 | 91 | 5.0E-21 |
| sp|A6S5C9|LSM6_BOTFB | U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2 | 24 | 94 | 2.0E-20 |
| sp|Q6BR90|LSM6_DEBHA | U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=LSM6 PE=3 SV=2 | 13 | 92 | 7.0E-20 |
| sp|A7F5M4|LSM6_SCLS1 | U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6 PE=3 SV=2 | 24 | 91 | 2.0E-19 |
| sp|A5DRQ6|LSM6_LODEL | U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2 | 24 | 90 | 1.0E-18 |
| sp|Q9SUM2|RUXF_ARATH | Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1 | 23 | 92 | 1.0E-15 |
| sp|Q6FYB6|LSM6_CANGA | U6 snRNA-associated Sm-like protein LSm6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=LSM6 PE=3 SV=2 | 24 | 92 | 2.0E-15 |
| sp|A7TK72|LSM6_VANPO | U6 snRNA-associated Sm-like protein LSm6 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=LSM6 PE=3 SV=1 | 14 | 92 | 2.0E-15 |
| sp|Q24297|RUXF_DROME | Small nuclear ribonucleoprotein F OS=Drosophila melanogaster GN=SmF PE=1 SV=2 | 23 | 93 | 7.0E-15 |
| sp|P62321|RUXF_XENLA | Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1 | 23 | 92 | 2.0E-14 |
| sp|Q3T0Z8|RUXF_BOVIN | Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2 | 23 | 92 | 2.0E-14 |
| sp|P62307|RUXF_MOUSE | Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1 | 23 | 92 | 2.0E-14 |
| sp|P62306|RUXF_HUMAN | Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1 | 23 | 92 | 2.0E-14 |
| sp|O59734|RUXF_SCHPO | Small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smf1 PE=1 SV=1 | 23 | 92 | 2.0E-13 |
| sp|Q6CPS7|LSM6_KLULA | U6 snRNA-associated Sm-like protein LSm6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LSM6 PE=3 SV=1 | 26 | 90 | 2.0E-13 |
| sp|Q54XP2|RUXF_DICDI | Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum GN=snrpf PE=3 SV=1 | 23 | 89 | 5.0E-13 |
| sp|P34659|RUXF_CAEEL | Probable small nuclear ribonucleoprotein F OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1 | 23 | 93 | 3.0E-12 |
| sp|Q75BR7|LSM6_ASHGO | U6 snRNA-associated Sm-like protein LSm6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=LSM6 PE=3 SV=1 | 12 | 90 | 4.0E-12 |
| sp|Q06406|LSM6_YEAST | U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM6 PE=1 SV=2 | 24 | 90 | 2.0E-11 |
| sp|A6ZYX7|LSM6_YEAS7 | U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces cerevisiae (strain YJM789) GN=LSM6 PE=3 SV=1 | 24 | 90 | 2.0E-11 |
| sp|P54999|RUXF_YEAST | Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMX3 PE=1 SV=1 | 23 | 89 | 1.0E-10 |
| sp|Q12U30|RUXX_METBU | Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=Mbur_2181 PE=3 SV=1 | 24 | 90 | 1.0E-10 |
| sp|Q465S1|RUXX_METBF | Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1 | 24 | 90 | 2.0E-10 |
| sp|Q9P5Z8|RUXF_NEUCR | Probable small nuclear ribonucleoprotein F OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B2O8.190 PE=3 SV=1 | 23 | 93 | 2.0E-10 |
| sp|O26745|RUXX_METTH | Putative snRNP Sm-like protein OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1 | 24 | 90 | 4.0E-10 |
| sp|Q8TL47|RUXX_METAC | Putative snRNP Sm-like protein OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3195 PE=3 SV=1 | 24 | 90 | 7.0E-10 |
| sp|Q8PZZ9|RUXX_METMA | Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0339 PE=3 SV=1 | 24 | 90 | 1.0E-09 |
| sp|O29386|RUXX_ARCFU | Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0875 PE=1 SV=1 | 24 | 92 | 2.0E-09 |
| sp|P57670|RUXX_THEAC | Putative snRNP Sm-like protein OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=Ta1240 PE=3 SV=1 | 14 | 90 | 1.0E-08 |
| sp|Q97BU5|RUXX_THEVO | Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=TV0360 PE=3 SV=2 | 24 | 90 | 4.0E-08 |
| sp|Q0W8R9|RUXX_METAR | Putative snRNP Sm-like protein OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=UNCMA_29510 PE=3 SV=1 | 24 | 90 | 1.0E-07 |
| sp|O74016|RUXX_PYRHO | Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1518.2 PE=3 SV=1 | 24 | 93 | 1.0E-07 |
| sp|Q8U0P4|RUXX_PYRFU | Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3 SV=1 | 24 | 93 | 2.0E-07 |
| sp|Q9V0Y8|RUXX_PYRAB | Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06500 PE=1 SV=1 | 23 | 93 | 3.0E-07 |
| sp|B6YUU5|RUXX_THEON | Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain NA1) GN=TON_0644 PE=3 SV=1 | 24 | 90 | 3.0E-07 |
| sp|Q5JIE0|RUXX_THEKO | Putative snRNP Sm-like protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3 SV=1 | 24 | 93 | 9.0E-07 |
| sp|C6A1T2|RUXX_THESM | Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1 | 24 | 93 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|779400 MDDFPPQPTEQSPPPPPPNQTGSPTDFLKNVVGKKVIVRLLSGVDYRGILSCLDGYMNIALEQTEEHVNGVVTNK YGDAFIRGNNVLYISAAEPL* |
| Coding | >Agabi119p4|779400 ATGGACGATTTTCCTCCTCAGCCGACGGAACAATCTCCCCCTCCACCGCCTCCCAACCAAACTGGCTCTCCTACA GACTTTCTTAAAAACGTTGTTGGAAAAAAAGTAATAGTGCGGTTATTATCCGGGGTTGACTATCGAGGTATTTTG TCCTGCCTTGATGGTTACATGAACATAGCGCTCGAGCAAACAGAGGAGCATGTAAATGGCGTTGTCACGAATAAA TACGGAGATGCGTTTATCAGAGGGAATAATGTTCTGTATATCTCGGCAGCGGAGCCGCTGTAG |
| Transcript | >Agabi119p4|779400 ATGGACGATTTTCCTCCTCAGCCGACGGAACAATCTCCCCCTCCACCGCCTCCCAACCAAACTGGCTCTCCTACA GACTTTCTTAAAAACGTTGTTGGAAAAAAAGTAATAGTGCGGTTATTATCCGGGGTTGACTATCGAGGTATTTTG TCCTGCCTTGATGGTTACATGAACATAGCGCTCGAGCAAACAGAGGAGCATGTAAATGGCGTTGTCACGAATAAA TACGGAGATGCGTTTATCAGAGGGAATAATGTTCTGTATATCTCGGCAGCGGAGCCGCTGTAG |
| Gene | >Agabi119p4|779400 ATGGACGATTTTCCTCCTCAGCCGACGGAACAATCTCCCCCTCCACCGCCTCCCAACCAAACTGGCTCTCCTACA GACTTTCTTAAAAACGTTGTTGGAAAAAAAGTAATAGTGCGGTTATTATCCGGGGTTGACTATCGAGGTGCGTGT TAGATTTCATATCGATCGAAAACCAATCAATCATTTGTTTCTTAGGTATTTTGTCCTGCCTTGATGGTTACATGA ACATAGCGCTCGAGCAAACAGAGGAGCATGTAAATGGCGTTGTCACGAATAAATACGGAGATGCGTTTATCAGAG GGAATAATGGTAAGGTGTTTTTCAATGTGTTTGAGCTTTGATTGAACTTTTTCGTGCAGTTCTGTATATCTCGGC AGCGGAGCCGCTGTAG |