Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|779300
Gene name
Locationscaffold_12:1514977..1516075
Strand+
Gene length (bp)1098
Transcript length (bp)714
Coding sequence length (bp)714
Protein length (aa) 238

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00657 Lipase_GDSL GDSL-like Lipase/Acylhydrolase 8.1E-11 37 235

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q99289|HLT_VIBPA Thermolabile hemolysin OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0226 PE=1 SV=2 37 231 2.0E-10

GO

GO Term Description Terminal node
GO:0016788 hydrolase activity, acting on ester bonds Yes
GO:0003674 molecular_function No
GO:0016787 hydrolase activity No
GO:0003824 catalytic activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|779300
MISGLCDTYEVISGIGYTTNGWNGNGDPTAPHSSVCFSGGPPWSVQFTEKTGMNLVDLAIGGAAVDNSIIFTGPL
DFVGQTTAFLEQVAPFPDKVSWNSSDSLFTVSFGTNDVNNSFQKTNDTGTRLYSQVMDSYFATVDRLYATGARNF
VFNNVVPFDRAQIGVGQGPELQEKLKQSILEFNAQLESSADAYCNSKSDIDTCVIFDTHTLFADLMDHPDNFGFE
NTDGFCQSYTNK*
Coding >Agabi119p4|779300
ATGATTTCGGGGCTGTGTGATACCTATGAGGTTATATCTGGGATTGGCTACACCACAAATGGTTGGAACGGAAAT
GGTGACCCTACTGCTCCTCATAGTTCTGTCTGCTTCTCTGGCGGTCCTCCTTGGTCGGTTCAATTCACTGAAAAG
ACAGGAATGAATCTTGTCGATCTCGCAATAGGCGGTGCTGCGGTTGATAACAGCATAATTTTCACAGGACCTCTC
GATTTCGTAGGTCAGACTACGGCCTTCCTGGAACAGGTCGCGCCTTTCCCCGATAAAGTATCGTGGAACAGCAGC
GATTCGTTGTTCACTGTCTCATTCGGAACCAACGACGTGAATAATTCGTTCCAAAAAACCAACGACACTGGAACA
CGGCTCTACAGTCAAGTGATGGATTCATATTTCGCCACTGTGGATAGGCTATACGCCACCGGAGCGCGGAATTTT
GTGTTCAACAACGTTGTTCCGTTCGATAGGGCACAAATTGGGGTTGGACAGGGCCCAGAACTCCAGGAAAAGTTG
AAGCAAAGTATACTTGAATTCAATGCTCAACTTGAATCAAGCGCAGACGCATATTGCAATTCGAAATCCGATATC
GACACCTGCGTTATTTTTGACACCCACACGCTCTTTGCCGATCTGATGGACCACCCAGATAACTTCGGGTTCGAG
AATACCGACGGTTTTTGCCAATCGTATACGAATAAATAG
Transcript >Agabi119p4|779300
ATGATTTCGGGGCTGTGTGATACCTATGAGGTTATATCTGGGATTGGCTACACCACAAATGGTTGGAACGGAAAT
GGTGACCCTACTGCTCCTCATAGTTCTGTCTGCTTCTCTGGCGGTCCTCCTTGGTCGGTTCAATTCACTGAAAAG
ACAGGAATGAATCTTGTCGATCTCGCAATAGGCGGTGCTGCGGTTGATAACAGCATAATTTTCACAGGACCTCTC
GATTTCGTAGGTCAGACTACGGCCTTCCTGGAACAGGTCGCGCCTTTCCCCGATAAAGTATCGTGGAACAGCAGC
GATTCGTTGTTCACTGTCTCATTCGGAACCAACGACGTGAATAATTCGTTCCAAAAAACCAACGACACTGGAACA
CGGCTCTACAGTCAAGTGATGGATTCATATTTCGCCACTGTGGATAGGCTATACGCCACCGGAGCGCGGAATTTT
GTGTTCAACAACGTTGTTCCGTTCGATAGGGCACAAATTGGGGTTGGACAGGGCCCAGAACTCCAGGAAAAGTTG
AAGCAAAGTATACTTGAATTCAATGCTCAACTTGAATCAAGCGCAGACGCATATTGCAATTCGAAATCCGATATC
GACACCTGCGTTATTTTTGACACCCACACGCTCTTTGCCGATCTGATGGACCACCCAGATAACTTCGGGTTCGAG
AATACCGACGGTTTTTGCCAATCGTATACGAATAAATAG
Gene >Agabi119p4|779300
ATGATTTCGGGGCTGTGTGATACCTATGAGGTTGTGATCATCTGCCTCCACTGGAATCGTCCCCAATGACTGAAT
GATTCCACTTCGAAGATATCTGGGATTGGGTGAAGAATAATTTTGACCACGACTAAACATTACTACCATTCAACA
GCTACAGTTAGTGTTCCATAGTCTTTCCTCGTGCGTAATTGTCGGACTGAATGTATTCTTCAACAGCCACAAATG
GTTGGAACGGAAATGGTGACCCTACTGCTCCTCATAGTTCTGTCTGCTTCTCTGGCGGTCCTCCTTGGTCGGTTC
AATTCACTGAAAAGACAGGAATGAATCTTGTCGATGTAGGTTCTGGCTCGTAATTTAGAGCTATACTGACAAGTT
GAATATCGTTCAGCTCGCAATAGGCGGTGCTGCGGTTGATAACAGCATAATTTTCACAGGACCTCTCGATTTCGT
AGGTCAGACTACGGCCTTCCTGGAACAGGTCGCGCCTTTCCCCGATAAAGTATCGTGGAACAGCAGCGATTCGTT
GTTCACTGTCTCATTCGGAAGTTGAGCCTATCTTACATCTATCAATGGACAAGCAACTGATTTCTCGTGTTAGCC
AACGACGTGAATAATTCGTTCCAAAAAACCAACGACACTGGAACACGGCTCTACAGTCAAGTGATGGATTCATAT
TTCGCCACTGTGGATAGGCTATACGCCACCGGAGCGCGGAATTTTGTGTTCAACAACGTTGTTCCGTTCGATAGG
GCACAAATTGGGGTTGGACAGGGCCCAGAACTCCAGGAAAAGTTGAAGGTACTCTTCTGATGATCACAGATTCAC
AGATTTAGTCGACTTTGATCCGGCAGCAAAGTATACTTGAATTCAATGCTCAACTTGAATCAAGCGCAGACGCAT
ATTGCAATTCGAAATCCGATATCGACACCTGCGTTATTTTTGACACCCGTACGAGCTATTATCCACAGCCGTCAC
TCTATGAAACTCACGTTTGAATGAAATCGACCAGACACGCTCTTTGCCGATCTGATGGACCACCCAGATAACTTC
GGGTTCGAGAATACCGACGGTTTTTGCCAATCGTATACGAATAAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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