Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|776550
Gene name
Locationscaffold_12:1256779..1257612
Strand-
Gene length (bp)833
Transcript length (bp)633
Coding sequence length (bp)633
Protein length (aa) 211

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.4E-06 30 75
PF01476 LysM LysM domain 2.5E-05 87 131

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 24 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|776550
MFSSKTIAVAVAAFFAQSALVAAADCSRTYTVKEGDICDSISSSQQSSTYQLAVSNQGAIDSSCSNLMPGQQICL
ATTAAEDCTDVYVVQPDDTCDGISSMKSLNSTILRLNNPQINEACDNIYVGEVMCVGSSVKVPPAPAGEIPATTI
PATAAPAVPTATKAPSHDNAAAPAPPAPTPTPAPQHEEEHDENEDEEDEDEEDLPFCDEI*
Coding >Agabi119p4|776550
ATGTTCTCCTCAAAAACTATCGCTGTTGCTGTTGCTGCCTTCTTCGCCCAGTCCGCTCTCGTCGCCGCGGCTGAT
TGCTCCAGGACATACACTGTCAAGGAAGGAGATATCTGCGATAGCATCTCCTCCAGTCAACAAAGCTCGACTTAC
CAGCTTGCGGTTTCCAACCAGGGGGCCATCGACTCTTCCTGCAGCAACCTTATGCCTGGCCAGCAAATCTGTCTC
GCCACTACTGCAGCGGAAGACTGTACCGACGTCTACGTCGTGCAGCCGGACGACACGTGTGACGGCATTTCCTCC
ATGAAGAGCCTCAATTCGACGATTCTCCGTCTCAACAACCCCCAAATTAACGAGGCATGCGATAATATCTATGTT
GGTGAGGTGATGTGTGTTGGCTCGTCAGTCAAGGTTCCTCCTGCCCCAGCAGGCGAAATCCCGGCGACCACAATT
CCTGCAACTGCCGCTCCCGCTGTTCCCACAGCCACCAAAGCTCCCTCGCATGACAATGCCGCTGCCCCTGCACCC
CCTGCCCCTACCCCTACCCCCGCTCCTCAACATGAGGAGGAGCATGATGAGAATGAAGATGAGGAGGACGAGGAC
GAGGAGGACCTCCCATTCTGTGATGAGATCTAA
Transcript >Agabi119p4|776550
ATGTTCTCCTCAAAAACTATCGCTGTTGCTGTTGCTGCCTTCTTCGCCCAGTCCGCTCTCGTCGCCGCGGCTGAT
TGCTCCAGGACATACACTGTCAAGGAAGGAGATATCTGCGATAGCATCTCCTCCAGTCAACAAAGCTCGACTTAC
CAGCTTGCGGTTTCCAACCAGGGGGCCATCGACTCTTCCTGCAGCAACCTTATGCCTGGCCAGCAAATCTGTCTC
GCCACTACTGCAGCGGAAGACTGTACCGACGTCTACGTCGTGCAGCCGGACGACACGTGTGACGGCATTTCCTCC
ATGAAGAGCCTCAATTCGACGATTCTCCGTCTCAACAACCCCCAAATTAACGAGGCATGCGATAATATCTATGTT
GGTGAGGTGATGTGTGTTGGCTCGTCAGTCAAGGTTCCTCCTGCCCCAGCAGGCGAAATCCCGGCGACCACAATT
CCTGCAACTGCCGCTCCCGCTGTTCCCACAGCCACCAAAGCTCCCTCGCATGACAATGCCGCTGCCCCTGCACCC
CCTGCCCCTACCCCTACCCCCGCTCCTCAACATGAGGAGGAGCATGATGAGAATGAAGATGAGGAGGACGAGGAC
GAGGAGGACCTCCCATTCTGTGATGAGATCTAA
Gene >Agabi119p4|776550
ATGTTCTCCTCAAAAACTATCGCTGTTGCTGTTGCTGCCTTCTTCGCCCAGTGTAAGCATCTGCCATCCACTCCA
CCGTGGAGCGCTCGGACCAAGCCCTGACTTGTTTTCTTTTTCCCTGTAGCCGCTCTCGTCGCCGCGGCTGATTGC
TCCAGGACATACACTGTCAAGGAAGGAGATATCTGCGATAGCATCTCCTCCAGTCAACAAAGCTCGACGTAAGTT
CACCGCTTTGAGCAAGTTCAACACCTAAATCTTCTTGTAGTTACCAGCTTGCGGTTTCCAACCAGGGGGCCATCG
ACTCTTCCTGCAGCAACCTTATGCCTGGCCAGCAAATCTGTCTCGCCACTACTGCAGCGGAAGACTGTACCGACG
TCTACGTCGTGCAGCCGGACGACACGTGTGACGGCATTTCCTCCATGAAGAGCCTCAATTCGACGATTCTCCGTC
TCAACAACCCCCAAATTAACGAGGCATGCGATAATATCTATGTTGGTGAGGTGAGTATCACACAGTGTGACCCTG
TGTGGCTATGTTTGAGATCAACAATGATTGACTGATACAATCTTTTTCCGCGACAGGTGATGTGTGTTGGCTCGT
CAGTCAAGGTTCCTCCTGCCCCAGCAGGCGAAATCCCGGCGACCACAATTCCTGCAACTGCCGCTCCCGCTGTTC
CCACAGCCACCAAAGCTCCCTCGCATGACAATGCCGCTGCCCCTGCACCCCCTGCCCCTACCCCTACCCCCGCTC
CTCAACATGAGGAGGAGCATGATGAGAATGAAGATGAGGAGGACGAGGACGAGGAGGACCTCCCATTCTGTGATG
AGATCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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