Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|774200
Gene name
Locationscaffold_12:949193..950212
Strand-
Gene length (bp)1019
Transcript length (bp)633
Coding sequence length (bp)633
Protein length (aa) 211

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02845 CUE CUE domain 1.0E-10 48 86

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q6BKU8|CUE1_DEBHA Coupling of ubiquitin conjugation to ER degradation protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CUE1 PE=3 SV=1 48 192 5.0E-11
sp|Q59NY7|CUE1_CANAL Coupling of ubiquitin conjugation to ER degradation protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CUE1 PE=3 SV=2 47 192 2.0E-07

GO

GO Term Description Terminal node
GO:0043130 ubiquitin binding Yes
GO:0005515 protein binding No
GO:0032182 ubiquitin-like protein binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 24 0.45

Transmembrane Domains

Domain # Start End Length
1 5 22 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|774200
MGEIVNVLVAFAVIVFLFRWATSGNNPHDNSRQRSPAELLGFRPKNVTQEMITTISNMFPDIPADNIRYDLLRSG
SIEVTTNKILEKGYLDAPPAAYYTLYPRTNRAPQPHAHPHDRRSASHAERKAAEKKETLISRFKLEQRIGSEKGE
IVNEEDVGGKAVWEDTAEKREASLKERKAKMILAARERFLAQQEKSRLASGSGSSSGIQS*
Coding >Agabi119p4|774200
ATGGGTGAAATCGTCAATGTCCTCGTCGCCTTTGCGGTTATTGTCTTCCTCTTTCGATGGGCGACCTCAGGTAAT
AACCCGCATGACAACTCAAGGCAGAGGTCGCCCGCTGAACTCTTGGGTTTCAGGCCAAAAAACGTTACGCAGGAA
ATGATCACAACTATATCCAACATGTTTCCTGATATCCCCGCCGATAACATTCGATATGACCTGTTGCGGTCGGGG
AGTATTGAGGTTACTACGAACAAAATCCTGGAAAAAGGTTATCTTGACGCGCCGCCCGCTGCGTATTACACCCTT
TATCCACGTACCAACAGGGCTCCACAGCCTCACGCCCACCCTCATGACCGGCGCTCTGCATCTCACGCCGAGAGG
AAAGCAGCCGAGAAAAAAGAAACATTGATTAGTCGGTTTAAACTTGAACAACGAATAGGAAGTGAGAAGGGGGAA
ATTGTGAATGAGGAAGATGTTGGAGGGAAAGCTGTTTGGGAGGATACGGCGGAGAAAAGGGAAGCAAGTTTGAAG
GAGAGGAAGGCTAAGATGATTTTGGCTGCGAGAGAGCGTTTTTTGGCCCAGCAAGAAAAGTCGCGTTTGGCTTCC
GGTTCGGGTTCCAGCTCTGGTATTCAGTCATAA
Transcript >Agabi119p4|774200
ATGGGTGAAATCGTCAATGTCCTCGTCGCCTTTGCGGTTATTGTCTTCCTCTTTCGATGGGCGACCTCAGGTAAT
AACCCGCATGACAACTCAAGGCAGAGGTCGCCCGCTGAACTCTTGGGTTTCAGGCCAAAAAACGTTACGCAGGAA
ATGATCACAACTATATCCAACATGTTTCCTGATATCCCCGCCGATAACATTCGATATGACCTGTTGCGGTCGGGG
AGTATTGAGGTTACTACGAACAAAATCCTGGAAAAAGGTTATCTTGACGCGCCGCCCGCTGCGTATTACACCCTT
TATCCACGTACCAACAGGGCTCCACAGCCTCACGCCCACCCTCATGACCGGCGCTCTGCATCTCACGCCGAGAGG
AAAGCAGCCGAGAAAAAAGAAACATTGATTAGTCGGTTTAAACTTGAACAACGAATAGGAAGTGAGAAGGGGGAA
ATTGTGAATGAGGAAGATGTTGGAGGGAAAGCTGTTTGGGAGGATACGGCGGAGAAAAGGGAAGCAAGTTTGAAG
GAGAGGAAGGCTAAGATGATTTTGGCTGCGAGAGAGCGTTTTTTGGCCCAGCAAGAAAAGTCGCGTTTGGCTTCC
GGTTCGGGTTCCAGCTCTGGTATTCAGTCATAA
Gene >Agabi119p4|774200
ATGGGTGAAATCGTCAATGTCCTCGTCGCCTTTGCGGTTATTGTCTTCCTCTTTCGATGGGCGACCTCAGGTTTC
TCGTTTGGCATCATTGTCTGTCTCTCTGGCGCTGATAGGATTCTTTATACAGGTAATAACCCGCATGACAACTCA
AGGCAGAGGTCGCCCGCTGAACTCTTGGGTTTCAGGCCAAAAAACGTTACGCAGGAAATGGTACGTTTTAATTTC
GGGGGATTGTGGATTACTCGGTGCTCCCAAGCACATATGCATCTCTTACTGTGGTCGTTTCTAATGTGTGCTATA
GATCACAACTATATCCAACATGTTTCCTGATATCCCCGCGTATGTCCTTCTTGGCCTCCTTGAAATTATTGTTCC
TTCCCTGAGCGCTCACGGCGAAAATTTCTAGCGATAACATTCGATATGACCTGTTGCGGTCGGGGAGTATTGAGG
TTACTACGAACAAAATCCTGGAAAAAGGTTATCTTGACGCGGTACGTCATTTTATCATTCCTGTTTCTTCCTTGT
TGAAACTACTCGGGTTTCTGTTACGGTTTTTCTGACAAAATCTTGTTCTTTCTTTTTGCTTTTTTCTTTTACCTC
TAGCCGCCCGCTGCGTATTACACCCTTTATCCACGTACCAACAGGGCTCCACAGCCTCACGCCCACCCTCATGAC
CGGCGCTCTGCATCTCACGCCGAGAGGAAAGCAGCCGAGAAAAAAGAAACATTGATTAGTCGGTTTAAACTTGAA
CAACGAATAGGAAGTGAGAAGGGGGAAATTGTGAATGAGGAAGATGTTGGAGGGAAAGCTGTTTGGGAGGATACG
GCGGAGAAAAGGGAAGCAAGTTTGAAGGAGAGGAAGGCTAAGATGATTTTGGCTGCGAGAGAGTGAGTGATAATT
ATTATTTTCCATTTTTACTGATTGAAGGTTTGCGTGAATTTGATAGGCGTTTTTTGGCCCAGCAAGAAAAGTCGC
GTTTGGCTTCCGGTTCGGGTTCCAGCTCTGGTATTCAGTCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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