© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|771000 |
| Gene name | |
| Location | scaffold_12:775071..775875 |
| Strand | + |
| Gene length (bp) | 804 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | 8.0E-17 | 103 | 161 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT35|TF22_SCHPO | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT34|TF21_SCHPO | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT43|TF28_SCHPO | Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT42|TF27_SCHPO | Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|P0CT39|TF26_SCHPO | Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 | 80 | 264 | 4.0E-29 |
| sp|Q9UR07|TF211_SCHPO | Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 | 80 | 264 | 5.0E-29 |
| sp|Q7LHG5|YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 | 52 | 266 | 8.0E-27 |
| sp|Q99315|YG31B_YEAST | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 | 52 | 264 | 8.0E-27 |
| sp|O93209|POL_FFV | Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 | 57 | 266 | 5.0E-11 |
| sp|Q09575|YRD6_CAEEL | Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 | 83 | 258 | 6.0E-11 |
| sp|P27401|POL_SFV3L | Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 | 84 | 266 | 1.0E-10 |
| sp|P23074|POL_SFV1 | Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 | 107 | 266 | 1.0E-10 |
| sp|P14350|POL_FOAMV | Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 | 93 | 266 | 4.0E-10 |
| sp|Q87040|POL_SFVCP | Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 | 93 | 266 | 8.0E-10 |
| sp|Q4R6I1|GIN1_MACFA | Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1 | 109 | 264 | 4.0E-09 |
| sp|Q9NXP7|GIN1_HUMAN | Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 | 91 | 264 | 4.0E-09 |
| sp|Q5RBK0|GIN1_PONAB | Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 | 91 | 264 | 6.0E-09 |
| sp|Q8K259|GIN1_MOUSE | Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2 | 94 | 262 | 8.0E-09 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 110 | 264 | 1.0E-08 |
| sp|P10272|POL_BAEVM | Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 | 94 | 265 | 2.0E-08 |
| sp|Q66H30|GIN1_RAT | Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1 | 94 | 262 | 4.0E-08 |
| sp|Q5DTZ0|NYNRI_MOUSE | Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2 | 88 | 251 | 4.0E-07 |
| sp|A4FUB7|GIN1_BOVIN | Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1 | 111 | 262 | 1.0E-06 |
| sp|P31792|POL_FENV1 | Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 | 94 | 265 | 2.0E-06 |
| sp|Q9P2P1|NYNRI_HUMAN | Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3 | 88 | 251 | 5.0E-06 |
| sp|P03360|POL_AVIRE | Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1 | 93 | 265 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|771000 MGKADALSRRPNFEQGTKDDNKDQTLLKPEYFAIRAMEEGHMLINAEEEGILDEIRKSEAKEDDVVKAVEEMKRV KVKSLRGDEWKLEEGLVLKKGKVYVPKDETLRMKIIRLHHNTPIAGHGGQWKTVKMVTRNYWWPGVTKQVQKYVE GCDQSQQNKNRPTPPAGKLMSNPIPTKPWADVSVDFIVKLPESQGMDSILVVCDRFSKMAHFIPTTETTSALGLA KLFRDHVWKLHGLPETVISDRGLQFAADFTKELNRMLRIDTR* |
| Coding | >Agabi119p4|771000 ATGGGGAAGGCAGACGCATTGAGCAGAAGACCCAATTTTGAACAGGGTACAAAGGATGATAACAAAGATCAAACC TTGTTAAAACCGGAGTACTTTGCAATACGAGCAATGGAAGAAGGTCATATGTTAATCAATGCCGAGGAAGAAGGG ATATTAGATGAAATCAGAAAATCAGAAGCAAAAGAAGATGACGTGGTGAAAGCGGTGGAAGAAATGAAGCGAGTA AAAGTGAAGTCATTAAGAGGAGATGAGTGGAAGCTGGAGGAAGGATTAGTGCTAAAGAAAGGAAAAGTCTACGTA CCAAAGGATGAAACACTGAGAATGAAAATCATTCGACTACATCATAATACTCCCATTGCCGGACATGGAGGACAA TGGAAGACAGTCAAAATGGTGACGCGCAATTACTGGTGGCCCGGCGTCACCAAGCAAGTCCAGAAGTACGTGGAG GGATGTGATCAAAGCCAACAAAACAAGAATCGACCAACACCACCGGCAGGGAAATTAATGTCAAACCCTATTCCC ACAAAACCATGGGCCGACGTATCTGTCGACTTCATAGTAAAATTACCAGAATCTCAGGGAATGGACTCAATCTTG GTGGTATGTGATCGTTTTAGTAAAATGGCTCATTTTATTCCAACTACGGAAACGACATCGGCACTAGGACTAGCC AAGCTGTTCAGAGATCACGTATGGAAGTTGCATGGACTACCAGAAACGGTAATCTCAGATAGGGGACTGCAGTTT GCTGCAGACTTTACGAAGGAGTTGAATAGAATGTTGAGAATTGACACTAGGTAA |
| Transcript | >Agabi119p4|771000 ATGGGGAAGGCAGACGCATTGAGCAGAAGACCCAATTTTGAACAGGGTACAAAGGATGATAACAAAGATCAAACC TTGTTAAAACCGGAGTACTTTGCAATACGAGCAATGGAAGAAGGTCATATGTTAATCAATGCCGAGGAAGAAGGG ATATTAGATGAAATCAGAAAATCAGAAGCAAAAGAAGATGACGTGGTGAAAGCGGTGGAAGAAATGAAGCGAGTA AAAGTGAAGTCATTAAGAGGAGATGAGTGGAAGCTGGAGGAAGGATTAGTGCTAAAGAAAGGAAAAGTCTACGTA CCAAAGGATGAAACACTGAGAATGAAAATCATTCGACTACATCATAATACTCCCATTGCCGGACATGGAGGACAA TGGAAGACAGTCAAAATGGTGACGCGCAATTACTGGTGGCCCGGCGTCACCAAGCAAGTCCAGAAGTACGTGGAG GGATGTGATCAAAGCCAACAAAACAAGAATCGACCAACACCACCGGCAGGGAAATTAATGTCAAACCCTATTCCC ACAAAACCATGGGCCGACGTATCTGTCGACTTCATAGTAAAATTACCAGAATCTCAGGGAATGGACTCAATCTTG GTGGTATGTGATCGTTTTAGTAAAATGGCTCATTTTATTCCAACTACGGAAACGACATCGGCACTAGGACTAGCC AAGCTGTTCAGAGATCACGTATGGAAGTTGCATGGACTACCAGAAACGGTAATCTCAGATAGGGGACTGCAGTTT GCTGCAGACTTTACGAAGGAGTTGAATAGAATGTTGAGAATTGACACTAGGTAA |
| Gene | >Agabi119p4|771000 ATGGGGAAGGCAGACGCATTGAGCAGAAGACCCAATTTTGAACAGGGTACAAAGGATGATAACAAAGATCAAACC TTGTTAAAACCGGAGTACTTTGCAATACGAGCAATGGAAGAAGGTCATATGTTAATCAATGCCGAGGAAGAAGGG ATATTAGATGAAATCAGAAAATCAGAAGCAAAAGAAGATGACGTGGTGAAAGCGGTGGAAGAAATGAAGCGAGTA AAAGTGAAGTCATTAAGAGGAGATGAGTGGAAGCTGGAGGAAGGATTAGTGCTAAAGAAAGGAAAAGTCTACGTA CCAAAGGATGAAACACTGAGAATGAAAATCATTCGACTACATCATAATACTCCCATTGCCGGACATGGAGGACAA TGGAAGACAGTCAAAATGGTGACGCGCAATTACTGGTGGCCCGGCGTCACCAAGCAAGTCCAGAAGTACGTGGAG GGATGTGATCAAAGCCAACAAAACAAGAATCGACCAACACCACCGGCAGGGAAATTAATGTCAAACCCTATTCCC ACAAAACCATGGGCCGACGTATCTGTCGACTTCATAGTAAAATTACCAGAATCTCAGGGAATGGACTCAATCTTG GTGGTATGTGATCGTTTTAGTAAAATGGCTCATTTTATTCCAACTACGGAAACGACATCGGCACTAGGACTAGCC AAGCTGTTCAGAGATCACGTATGGAAGTTGCATGGACTACCAGAAACGGTAATCTCAGATAGGGGACTGCAGTTT GCTGCAGACTTTACGAAGGAGTTGAATAGAATGTTGAGAATTGACACTAGGTAA |