Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|770800
Gene name
Locationscaffold_12:764295..765838
Strand+
Gene length (bp)1543
Transcript length (bp)1326
Coding sequence length (bp)1326
Protein length (aa) 442

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.1E-12 36 162

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 57 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|770800
MVNGSDNSAWEMSGSSAPPLPTTDPVEIRARSLLSARASAIIESHLPNSMLSQAAAQTDARALWSWLEGQYGQKG
PTFAYERFVTAQNFKINDSTDPSSAIADLYALFAAVESTGALIHELIRTMMLLNALPNRFEHVASNILAEKRSVA
DLKWEETRARIIAAWCNPHTVANAACFRQQNQPKPKWDKQKPDQGQGKSQGSGSGSGSGQNQNKQQQPQQKKKAS
IEEVKDTTPDYSASSAIASMARLTSTSTRAKVDEMKSRSPKLGNHTISGEEFLFFPDGNMIDLSPPDTDIDSWTL
PRLRPATRNLLSDKSDVDLDPSDSGSIPRDPRKRPSSCHSPTPYERAKTKVLSLWDQRLNAVTVTAPPIEDGAGQ
VGGNAPAVKMPATKGKQVEKMDVDKADEISLGDEDGEFEAVLSPETKAWLNQPISEEDWAALRGFD*
Coding >Agabi119p4|770800
ATGGTCAACGGCTCCGATAATTCGGCTTGGGAAATGAGTGGTTCCTCTGCTCCTCCTCTGCCAACCACAGATCCG
GTTGAGATACGAGCTCGTTCTCTCCTCTCGGCCCGAGCATCTGCTATTATCGAGTCCCATCTCCCAAATTCGATG
CTCAGTCAAGCGGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGTTAGAAGGCCAGTACGGCCAAAAAGGA
CCGACATTCGCTTACGAGCGTTTCGTCACGGCTCAAAATTTCAAAATAAACGACTCCACCGATCCATCGTCTGCG
ATTGCAGATCTCTATGCACTATTTGCCGCTGTTGAAAGCACCGGTGCGTTGATCCATGAATTGATCCGCACCATG
ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTCGCTTCGAACATTCTAGCTGAGAAAAGATCGGTTGCC
GATCTTAAATGGGAGGAAACCCGTGCCCGCATCATCGCTGCGTGGTGCAACCCCCATACAGTTGCCAATGCTGCG
TGTTTCCGCCAGCAGAACCAGCCAAAACCCAAATGGGACAAACAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA
GGCTCTGGTTCCGGTTCTGGCTCCGGCCAGAATCAAAACAAGCAACAACAACCTCAGCAGAAGAAGAAAGCCTCT
ATCGAAGAAGTCAAGGATACCACTCCTGACTATTCCGCTTCTTCTGCCATCGCCTCGATGGCGCGGCTCACATCC
ACCTCTACTCGCGCGAAAGTTGATGAGATGAAGAGCAGATCGCCCAAGTTGGGCAACCATACTATTTCGGGTGAG
GAATTTCTTTTCTTCCCTGATGGTAATATGATTGATCTTTCCCCTCCGGATACTGACATTGACTCTTGGACTTTG
CCTCGGCTTCGTCCCGCAACGCGAAATCTCCTATCAGACAAATCTGATGTTGATCTTGATCCATCAGACTCCGGG
TCGATCCCTCGGGACCCTCGGAAACGTCCTTCCTCTTGCCATTCCCCCACACCCTACGAAAGGGCCAAAACGAAA
GTGTTATCCCTCTGGGATCAACGTCTTAACGCAGTGACTGTTACAGCCCCTCCAATCGAGGATGGGGCCGGTCAA
GTGGGTGGTAATGCTCCGGCTGTAAAAATGCCGGCTACGAAAGGAAAACAAGTTGAGAAGATGGATGTTGATAAG
GCTGATGAGATTTCTCTCGGCGATGAAGATGGAGAATTTGAGGCAGTACTGTCTCCAGAAACAAAGGCTTGGTTG
AACCAGCCTATCTCCGAGGAAGATTGGGCCGCTCTTCGTGGCTTCGATTAG
Transcript >Agabi119p4|770800
ATGGTCAACGGCTCCGATAATTCGGCTTGGGAAATGAGTGGTTCCTCTGCTCCTCCTCTGCCAACCACAGATCCG
GTTGAGATACGAGCTCGTTCTCTCCTCTCGGCCCGAGCATCTGCTATTATCGAGTCCCATCTCCCAAATTCGATG
CTCAGTCAAGCGGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGTTAGAAGGCCAGTACGGCCAAAAAGGA
CCGACATTCGCTTACGAGCGTTTCGTCACGGCTCAAAATTTCAAAATAAACGACTCCACCGATCCATCGTCTGCG
ATTGCAGATCTCTATGCACTATTTGCCGCTGTTGAAAGCACCGGTGCGTTGATCCATGAATTGATCCGCACCATG
ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTCGCTTCGAACATTCTAGCTGAGAAAAGATCGGTTGCC
GATCTTAAATGGGAGGAAACCCGTGCCCGCATCATCGCTGCGTGGTGCAACCCCCATACAGTTGCCAATGCTGCG
TGTTTCCGCCAGCAGAACCAGCCAAAACCCAAATGGGACAAACAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA
GGCTCTGGTTCCGGTTCTGGCTCCGGCCAGAATCAAAACAAGCAACAACAACCTCAGCAGAAGAAGAAAGCCTCT
ATCGAAGAAGTCAAGGATACCACTCCTGACTATTCCGCTTCTTCTGCCATCGCCTCGATGGCGCGGCTCACATCC
ACCTCTACTCGCGCGAAAGTTGATGAGATGAAGAGCAGATCGCCCAAGTTGGGCAACCATACTATTTCGGGTGAG
GAATTTCTTTTCTTCCCTGATGGTAATATGATTGATCTTTCCCCTCCGGATACTGACATTGACTCTTGGACTTTG
CCTCGGCTTCGTCCCGCAACGCGAAATCTCCTATCAGACAAATCTGATGTTGATCTTGATCCATCAGACTCCGGG
TCGATCCCTCGGGACCCTCGGAAACGTCCTTCCTCTTGCCATTCCCCCACACCCTACGAAAGGGCCAAAACGAAA
GTGTTATCCCTCTGGGATCAACGTCTTAACGCAGTGACTGTTACAGCCCCTCCAATCGAGGATGGGGCCGGTCAA
GTGGGTGGTAATGCTCCGGCTGTAAAAATGCCGGCTACGAAAGGAAAACAAGTTGAGAAGATGGATGTTGATAAG
GCTGATGAGATTTCTCTCGGCGATGAAGATGGAGAATTTGAGGCAGTACTGTCTCCAGAAACAAAGGCTTGGTTG
AACCAGCCTATCTCCGAGGAAGATTGGGCCGCTCTTCGTGGCTTCGATTAG
Gene >Agabi119p4|770800
ATGGTCAACGGCTCCGATAATTCGGCTTGGGAAATGAGTGGTTCCTCTGCTCCTCCTCTGCCAACCACAGATCCG
GTTGAGATACGAGCTCGTTCTCTCCTCTCGGCCCGAGCATCTGCTATTATCGAGTCCCATCTCCCAAATTCGATG
CTCAGTCAAGCGGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGTTAGAAGGCCAGTACGGCCAAAAAGGA
CCGACATTCGCTTACGAGCGTTTCGTCACGGCTCAAAATTTCAAAATAAACGACTCCACCGATCCATCGTCTGCG
ATTGCAGATCTCTATGCACTATTTGCCGCTGTTGAAAGCACCGGTGCGTTGATCCATGAATTGATCCGCACCATG
ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTCGCTTCGAACATTCTAGCTGAGAAAAGATCGGTTGCC
GATCTTAAATGGGAGGAAACCCGTGCCCGCATCATCGCTGCGTGGTGCAACCCCCATACAGTTGCCAATGCTGCG
TGTTTCCGCCAGCAGAACCAGCCAAAACCCAAATGGGACAAACAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA
GGCTCTGGTTCCGGTTCTGGCTCCGGCCAGAATCAAAACAAGCAACAACAACCTCAGCAGAAGAAGAAAGGTGAG
TAGCAGAATGAGAACAACAAGAAGAAGAGAACCCGCTCCCGTAAAAAGAAGCAGGGTAATGAGGCATCTACAGCC
TCTATCGAAGAAGTCAAGGATACCACTCCTGACTATTCCGCTTCTTCTGCCATCGCCTCGATGGCGCGGCTCACA
TCCACCTCTACTCGCGCGAAAGTTGATGAGATGAAGAGCAGGTTTGTCCCGCTCCCATCTAGATCAGATCCAAAT
CTAACATGGAATAGATCGCCCAAGTTGGGCAACCATACTATTTCGGGTGAGGAATTTCTTTTCTTCCCTGATGGT
AATATGATTGATCTTTCCCCTCCGGATACTGACATTGACTCTTGGACTTTGCCTCGGCTTCGTCCCGCAACGCGA
AATCTCCTATCAGACAAATCTGATGTTGATCTTGATCCATCAGACTCCGGGTCGATCCCTCGGGACCCTCGGAAA
CGTCCTTCCTCTTGCCATTCCCCCACACCCTACGAAAGGGCCAAAACGAAAGTGTTATCCCTCTGGGATCAACGT
CTTAACGCAGTGACTGTTACAGCCCCTCCAATCGAGGATGGGGCCGGTCAAGTGGGTGGTAATGCTCCGGCTGTA
AAAATGCCGGCTACGAAAGGAAAACAAGTTGAGAAGATGGATGTTGATAAGGCTGATGAGATTTCTCTCGGCGAT
GAAGATGGAGAATTTGAGTATGAATACGATGCGGAATGCGAACCGGACAGCTTTGCGCAAGTCCCTCGCTCCTCT
ACCATATCTCAGATTAACTCATGGATTCTACAGGGCAGTACTGTCTCCAGAAACAAAGGCTTGGTTGAACCAGCC
TATCTCCGAGGAAGATTGGGCCGCTCTTCGTGGCTTCGATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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