Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|760350
Gene name
Locationscaffold_11:1507442..1508578
Strand-
Gene length (bp)1136
Transcript length (bp)681
Coding sequence length (bp)681
Protein length (aa) 227

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading 4.7E-06 52 223

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 52 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|760350
MKNLYSEKGKNDVHDMYRTGRDPMMMNVAQKSRLKITSFSLAFATLPVALGHGRVLSPPSRVIGDANLEACGAGV
YDVLDDDATGPIENAAAKVGSDYNDLQCHLWFCKGYQFEDNEDRVQRYSTGQVVNFAVDIVARHTGIANVSVVDL
ASQTTIGKPLFNWPVYTNNSLGPPNWPKNETNFDVTIPSGLDAICDAPNKCAIQWWWNSVYSNHQTFESCVDFVI
V*
Coding >Agabi119p4|760350
ATGAAAAACTTGTACTCGGAGAAAGGTAAGAATGACGTTCATGACATGTACCGGACCGGCCGGGATCCTATGATG
ATGAACGTCGCGCAAAAGAGCCGACTCAAGATAACAAGTTTTTCACTCGCTTTTGCCACCTTACCCGTTGCGCTG
GGACACGGCAGGGTCTTGAGCCCGCCTTCTCGTGTTATTGGTGATGCGAATCTAGAGGCGTGTGGTGCGGGTGTA
TATGACGTACTAGACGACGACGCTACGGGTCCAATCGAAAATGCAGCGGCGAAGGTCGGATCCGATTACAATGAT
CTCCAATGCCATTTGTGGTTCTGCAAAGGATATCAGTTCGAGGATAACGAGGACCGAGTTCAAAGGTACTCTACA
GGGCAGGTTGTCAACTTTGCAGTTGATATAGTAGCCAGACATACGGGTATCGCAAATGTTTCTGTCGTTGATCTT
GCGTCGCAAACCACAATTGGTAAACCGTTGTTCAATTGGCCTGTATACACCAACAATTCTTTGGGTCCTCCTAAC
TGGCCGAAGAACGAAACCAATTTCGATGTTACGATTCCATCGGGTTTGGACGCAATATGCGATGCTCCGAACAAA
TGTGCCATCCAGTGGTGGTGGAACAGTGTCTACAGTAATCATCAAACTTTCGAGAGTTGCGTCGATTTTGTCATT
GTTTGA
Transcript >Agabi119p4|760350
ATGAAAAACTTGTACTCGGAGAAAGGTAAGAATGACGTTCATGACATGTACCGGACCGGCCGGGATCCTATGATG
ATGAACGTCGCGCAAAAGAGCCGACTCAAGATAACAAGTTTTTCACTCGCTTTTGCCACCTTACCCGTTGCGCTG
GGACACGGCAGGGTCTTGAGCCCGCCTTCTCGTGTTATTGGTGATGCGAATCTAGAGGCGTGTGGTGCGGGTGTA
TATGACGTACTAGACGACGACGCTACGGGTCCAATCGAAAATGCAGCGGCGAAGGTCGGATCCGATTACAATGAT
CTCCAATGCCATTTGTGGTTCTGCAAAGGATATCAGTTCGAGGATAACGAGGACCGAGTTCAAAGGTACTCTACA
GGGCAGGTTGTCAACTTTGCAGTTGATATAGTAGCCAGACATACGGGTATCGCAAATGTTTCTGTCGTTGATCTT
GCGTCGCAAACCACAATTGGTAAACCGTTGTTCAATTGGCCTGTATACACCAACAATTCTTTGGGTCCTCCTAAC
TGGCCGAAGAACGAAACCAATTTCGATGTTACGATTCCATCGGGTTTGGACGCAATATGCGATGCTCCGAACAAA
TGTGCCATCCAGTGGTGGTGGAACAGTGTCTACAGTAATCATCAAACTTTCGAGAGTTGCGTCGATTTTGTCATT
GTTTGA
Gene >Agabi119p4|760350
ATGAAAAACTTGTACTCGGAGAAAGGTAAGAATGACGTTCATGACATGTACCGGACCGGCCGGGATCCTATGATG
ATGAACGTCGCGCAAAAGAGGTGAGCAGGCCTAACTTCAACCGGACCGTCGGCTGATAGAGAAGTCGTGGTATAA
TTTTCTTTACTCGACATTCAGCCGACTCAAGATAACAAGTTGTATAAAGGCATCACAAGGTATCGATTTCAACTC
AGAACATGAAGTTGGAGTTTATAGTTTCACTCGCTTTTGCCACCTTACCCGTTGCGCTGGGACACGGCAGGGTCT
TGAGCCCGCCTTCTCGTGTTGTGAGTCCTATTTTGTTTTTATAGATATGTTTGGACAATGTGAATGTTAACTGAA
TCTTTCATAGATTGGTGATGCGAATCTAGAGGCGTGTGGTGCGGGTGTATATGACGTACTAGACGACGACGCTAC
GGGTCCAGTAAGTAATTGTTGATGGTTTGATGAAGGGACCTATGAGCTAATTAGGATCCTTGGATTAGATCGAAA
ATGCAGCGGCGAAGGTCGGATCCGATTACAATGATCTCCAATGCCATTTGTGGTTCTGCAAAGGATATCAGGTTA
GTTACTCGGTATCACACTTTGATGGCCATATGTTAAACTTCGCTTATCCGGAAACAGTTCGAGGATAACGAGGAC
CGAGTTCAAAGGTACTCTACAGGGCAGGTTGTCAACTTTGCAGTTGATATAGTAGCCAGACATACGGGTATCGCA
GTACGTCATACCTTCATTTCCCTCTGATAATAATACTTCTTAGGGTCTGATAAAATTTTTATCTCCATCAGAATG
TTTCTGTCGTTGATCTTGCGTCGCAAACCACAATTGGTAAACCGTTGTTCAATTGGCCTGTATACACCAACAATT
CTTTGGGTCCTCCTAACTGGCCGAAGAACGAAAGTGAGTTTTTACAAAGATTGATTGAAATGTCATTTTGAACAA
CAAACTTCTTTGTTGGAACAGCCAATTTCGATGTTACGATTCCATCGGGTTTGGACGCAATATGCGATGCTCCGA
ACAAATGTGCCATCCAGTGGTGGTGGAACAGTGTCTACAGTAATCATCAAACTTTCGAGAGTTGCGTCGATTTTG
TCATTGTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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