Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|759600
Gene name
Locationscaffold_11:1331179..1332219
Strand+
Gene length (bp)1040
Transcript length (bp)849
Coding sequence length (bp)849
Protein length (aa) 283

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01940 DUF92 Integral membrane protein DUF92 1.0E-71 8 272

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1 6 274 3.0E-41
sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=1 SV=1 6 274 9.0E-40
sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1 3 274 1.0E-37
sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1 3 274 1.0E-34
sp|Q6P726|TMM19_RAT Transmembrane protein 19 OS=Rattus norvegicus GN=Tmem19 PE=2 SV=2 12 274 6.0E-33
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Swissprot ID Swissprot Description Start End E-value
sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1 6 274 3.0E-41
sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=1 SV=1 6 274 9.0E-40
sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1 3 274 1.0E-37
sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1 3 274 1.0E-34
sp|Q6P726|TMM19_RAT Transmembrane protein 19 OS=Rattus norvegicus GN=Tmem19 PE=2 SV=2 12 274 6.0E-33
sp|Q91W52|TMM19_MOUSE Transmembrane protein 19 OS=Mus musculus GN=Tmem19 PE=1 SV=1 3 274 7.0E-32
sp|Q58343|Y933_METJA Uncharacterized membrane protein MJ0933 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0933 PE=3 SV=1 141 274 6.0E-12
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.5

Transmembrane Domains

Domain # Start End Length
1 34 56 22
2 77 99 22
3 175 197 22
4 209 231 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|759600
MQVVPLVLALLLSLHGLRKKSLSPSGALTAFCVGYGTLSGGLWVFGITLIGFYLIGSRATKYGKQRKAKLEEGYQ
EGGYRSGWQVLCNSVCGVAAAVMWNGMFGVEYDSSKWCPLDREVGNGWSRMLLFVALGHFACCLGDTLASELGIL
SAGQPRLVTTFERVPPGTNGGMSVGGTLASLLGGAAVGVLMASTLVVENVRCREAWSSVTLSLIVGGALAGFLGS
LIDSLIGATLQQTRYSQGRVSTEGEVISGLNVLTNNQVNLVSSVITSVVSGVVSRSR*
Coding >Agabi119p4|759600
ATGCAAGTCGTACCTCTCGTACTCGCGTTGCTATTGAGCCTTCACGGTTTACGCAAAAAATCGCTTTCGCCCAGT
GGAGCTCTGACAGCCTTTTGTGTGGGTTATGGTACCTTGTCTGGAGGACTATGGGTATTTGGTATTACACTCATC
GGGTTCTATCTCATCGGAAGTCGGGCCACGAAATATGGAAAACAGCGCAAAGCGAAATTGGAGGAGGGGTATCAA
GAGGGGGGATATCGGAGTGGGTGGCAGGTGTTGTGCAATAGCGTGTGTGGGGTGGCGGCGGCGGTGATGTGGAAT
GGCATGTTTGGGGTGGAGTATGACAGTAGTAAGTGGTGTCCGCTGGACAGAGAGGTTGGCAATGGATGGAGTCGA
ATGCTGCTATTTGTGGCTCTTGGCCATTTTGCATGCTGTTTGGGGGACACGTTGGCGTCTGAGCTGGGCATTTTG
TCTGCTGGGCAGCCGAGACTGGTGACGACGTTTGAGCGAGTTCCGCCTGGGACGAACGGAGGAATGTCGGTGGGC
GGCACGCTTGCTTCCCTTTTGGGCGGTGCGGCGGTCGGGGTCCTGATGGCGTCCACTCTGGTCGTTGAGAACGTG
CGGTGCCGAGAAGCGTGGAGCTCTGTGACGCTCTCGCTGATCGTGGGGGGGGCCTTGGCCGGCTTCTTGGGCAGC
CTGATTGATTCGTTGATCGGCGCGACCCTTCAGCAGACCCGCTACTCTCAAGGCCGTGTGTCGACCGAGGGCGAG
GTGATTAGCGGGTTGAATGTGTTGACAAACAACCAGGTGAATCTGGTGTCGTCGGTGATTACGTCGGTGGTATCT
GGGGTCGTGTCACGGTCACGGTGA
Transcript >Agabi119p4|759600
ATGCAAGTCGTACCTCTCGTACTCGCGTTGCTATTGAGCCTTCACGGTTTACGCAAAAAATCGCTTTCGCCCAGT
GGAGCTCTGACAGCCTTTTGTGTGGGTTATGGTACCTTGTCTGGAGGACTATGGGTATTTGGTATTACACTCATC
GGGTTCTATCTCATCGGAAGTCGGGCCACGAAATATGGAAAACAGCGCAAAGCGAAATTGGAGGAGGGGTATCAA
GAGGGGGGATATCGGAGTGGGTGGCAGGTGTTGTGCAATAGCGTGTGTGGGGTGGCGGCGGCGGTGATGTGGAAT
GGCATGTTTGGGGTGGAGTATGACAGTAGTAAGTGGTGTCCGCTGGACAGAGAGGTTGGCAATGGATGGAGTCGA
ATGCTGCTATTTGTGGCTCTTGGCCATTTTGCATGCTGTTTGGGGGACACGTTGGCGTCTGAGCTGGGCATTTTG
TCTGCTGGGCAGCCGAGACTGGTGACGACGTTTGAGCGAGTTCCGCCTGGGACGAACGGAGGAATGTCGGTGGGC
GGCACGCTTGCTTCCCTTTTGGGCGGTGCGGCGGTCGGGGTCCTGATGGCGTCCACTCTGGTCGTTGAGAACGTG
CGGTGCCGAGAAGCGTGGAGCTCTGTGACGCTCTCGCTGATCGTGGGGGGGGCCTTGGCCGGCTTCTTGGGCAGC
CTGATTGATTCGTTGATCGGCGCGACCCTTCAGCAGACCCGCTACTCTCAAGGCCGTGTGTCGACCGAGGGCGAG
GTGATTAGCGGGTTGAATGTGTTGACAAACAACCAGGTGAATCTGGTGTCGTCGGTGATTACGTCGGTGGTATCT
GGGGTCGTGTCACGGTCACGGTGA
Gene >Agabi119p4|759600
ATGCAAGTCGTACCTCTCGTACTCGCGTTGCTATTGAGCCTTCACGGTTTACGCAAAAAATCGCTTTCGCCCAGT
GGAGCTCTGACAGCCTTTTGTGTGGGTTATGGTACCTTGTCTGGAGGACTATGGGTATTTGGTATTACACTCATC
GGGTTCTATCTCATCGGAAGTCGGGCCACGAAATGTAAGTTTTGAGTTTTGAATTTTTGAGTAAGTATGAATGTA
TATACACAGATGGAAAACAGCGCAAAGCGAAATTGGAGGAGGGGTATCAAGAGGGGGGATATCGGAGTGGGTGGC
AGGTGTTGTGCAATAGCGTGTGTGGGGTGGCGGCGGCGGTGATGTGGAATGGCATGTTTGGGGTGGAGTATGACA
GTAGTAAGTGGTGTCCGCTGGACAGAGAGGTTGGCAATGGATGGAGTCGAATGCTGCTATTTGTGGCTCTTGGGT
GAGTAATAACACTCATCATTCATGATGCTGAACTGACGGGTCTACAGCCATTTTGCATGCTGTTTGGGGGACACG
TTGGCGTCTGAGCTGGGCATTTTGTCTGCTGGGCAGCCGAGACTGGTGACGACGTTTGAGCGAGTTCCGCCTGGG
ACGAACGGAGGAATGTCGGTGGGCGGCACGCTTGCTTCCCTTTTGGGCGGTGCGGCGGTCGGGGTCCTGATGGCG
TCCACTCTGGTCGTTGAGAACGTGCGGTGCCGAGAAGCGTGGAGCTCTGTGACGCTCTCGCTGATCGTGGGGGGG
GCCTTGGCCGGCTTCTTGGGCAGCCTGGTGCGTCACGCTGTCCGCCTTGATGTAAAACTCACAAAAGACCATAGA
TTGATTCGTTGATCGGCGCGACCCTTCAGCAGACCCGCTACTCTCAAGGCCGTGTGTCGACCGAGGGCGAGGTGA
TTAGCGGGTTGAATGTGTTGACAAACAACCAGGTGCGTAATAAACTATGTGTGTACGCTGTTGCTGAGGATGAGC
AGGTGAATCTGGTGTCGTCGGTGATTACGTCGGTGGTATCTGGGGTCGTGTCACGGTCACGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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