Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|758100
Gene name
Location	scaffold_11:1200128..1201473
Strand	+
Gene length (bp)	1345
Transcript length (bp)	1281
Coding sequence length (bp)	1281
Protein length (aa)	427

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	1.9E-14	105	237
PF00098	zf-CCHC	Zinc knuckle	6.5E-04	294	310

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P10978\|POLX_TOBAC	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1	101	404	5.0E-12

GO

GO Term	Description	Terminal node
GO:0008270	zinc ion binding	Yes
GO:0003676	nucleic acid binding	Yes
GO:0097159	organic cyclic compound binding	No
GO:1901363	heterocyclic compound binding	No
GO:0043169	cation binding	No
GO:0043167	ion binding	No
GO:0046872	metal ion binding	No
GO:0005488	binding	No
GO:0046914	transition metal ion binding	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 42	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
Zinc finger, CCHC-type

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|758100 MGPALGETTSETLQFPKFNGTNYHFWADNMKAALQAKSVWGVTSHRERCPPHPEAEYPGLYTTTSLTVEGELPTR ARKVGQALIDVLQSKGYLAWEQSIEKYERWLNKDDMAMGLIRNAIEYTQRETIIDMNTSAEMWDHLHRTYVDQQS GINIHFYYQELYSKKWDGHSSMSDHIGFYLNIRHRFIEAGHRIDNNVIINSLLLSLPHTPVWEVVKQNLLYNQSR LTLKNVTAELLAVFDRILHEDDAKGSKSLALVSKGDNEASGSKKADGKEGKGKKKGKKKGKREPKPHDICHNCQE KGHWSTTCTKPKKPKAESKAESKSAGNANVAVDNTSTSGTSREVGTLYMASKTMGIPTGLLLDSAATCHMICDCS YFIEYEACTQQHISVGGFNNIPVAGVGKIRFRASSPNVLENYNDQVPRSGA*
Coding	>Agabi119p4\|758100 ATGGGCCCCGCACTTGGCGAAACGACTTCTGAGACTCTTCAGTTTCCGAAGTTTAACGGAACGAACTATCATTTT TGGGCTGATAATATGAAGGCAGCCTTGCAGGCGAAATCCGTTTGGGGTGTTACTTCTCATCGCGAACGATGCCCA CCTCATCCTGAGGCAGAGTATCCTGGTTTATACACCACTACTTCTCTGACTGTTGAAGGCGAACTTCCTACTCGA GCCAGGAAGGTTGGCCAAGCTCTCATTGATGTCCTTCAGTCAAAGGGATATCTCGCTTGGGAACAAAGTATTGAG AAGTATGAGAGGTGGTTGAACAAGGATGACATGGCAATGGGATTGATTCGGAATGCTATCGAGTACACTCAACGT GAGACCATAATCGACATGAATACGTCCGCGGAGATGTGGGACCATCTTCACCGAACTTATGTTGATCAACAGAGT GGAATAAATATCCACTTCTACTATCAGGAGCTATACTCGAAGAAGTGGGACGGTCATTCATCGATGAGTGATCAC ATTGGGTTTTACCTCAATATCAGACATCGATTTATTGAAGCGGGTCATCGTATCGATAATAACGTTATCATCAAC TCTCTCTTGTTGTCTCTTCCACATACGCCTGTCTGGGAAGTTGTTAAACAAAATCTTCTCTACAATCAAAGTCGG CTTACTCTCAAAAATGTCACTGCGGAACTACTTGCAGTGTTTGATCGTATTCTTCATGAAGATGATGCTAAGGGT TCCAAATCCCTAGCTCTTGTTTCAAAGGGGGATAACGAAGCGAGTGGGAGTAAGAAAGCTGATGGAAAAGAGGGT AAAGGAAAGAAGAAGGGAAAGAAGAAAGGAAAACGTGAACCGAAACCTCACGATATTTGTCACAACTGTCAAGAA AAGGGTCATTGGAGCACGACTTGTACTAAACCAAAGAAACCTAAAGCCGAGTCTAAAGCCGAGTCTAAATCCGCT GGAAATGCAAACGTCGCTGTTGACAATACTAGTACTTCTGGAACTAGTCGTGAAGTTGGAACGCTATACATGGCT TCCAAAACTATGGGAATTCCAACGGGACTACTCCTTGACAGTGCCGCTACTTGCCATATGATCTGTGATTGTTCA TATTTTATCGAATACGAAGCTTGTACGCAACAGCATATTTCTGTTGGAGGTTTCAACAATATCCCTGTTGCTGGA GTCGGAAAGATACGATTCCGTGCTTCATCTCCGAACGTCTTGGAAAACTACAACGATCAGGTGCCGAGATCAGGG GCTTGA
Transcript	>Agabi119p4\|758100 ATGGGCCCCGCACTTGGCGAAACGACTTCTGAGACTCTTCAGTTTCCGAAGTTTAACGGAACGAACTATCATTTT TGGGCTGATAATATGAAGGCAGCCTTGCAGGCGAAATCCGTTTGGGGTGTTACTTCTCATCGCGAACGATGCCCA CCTCATCCTGAGGCAGAGTATCCTGGTTTATACACCACTACTTCTCTGACTGTTGAAGGCGAACTTCCTACTCGA GCCAGGAAGGTTGGCCAAGCTCTCATTGATGTCCTTCAGTCAAAGGGATATCTCGCTTGGGAACAAAGTATTGAG AAGTATGAGAGGTGGTTGAACAAGGATGACATGGCAATGGGATTGATTCGGAATGCTATCGAGTACACTCAACGT GAGACCATAATCGACATGAATACGTCCGCGGAGATGTGGGACCATCTTCACCGAACTTATGTTGATCAACAGAGT GGAATAAATATCCACTTCTACTATCAGGAGCTATACTCGAAGAAGTGGGACGGTCATTCATCGATGAGTGATCAC ATTGGGTTTTACCTCAATATCAGACATCGATTTATTGAAGCGGGTCATCGTATCGATAATAACGTTATCATCAAC TCTCTCTTGTTGTCTCTTCCACATACGCCTGTCTGGGAAGTTGTTAAACAAAATCTTCTCTACAATCAAAGTCGG CTTACTCTCAAAAATGTCACTGCGGAACTACTTGCAGTGTTTGATCGTATTCTTCATGAAGATGATGCTAAGGGT TCCAAATCCCTAGCTCTTGTTTCAAAGGGGGATAACGAAGCGAGTGGGAGTAAGAAAGCTGATGGAAAAGAGGGT AAAGGAAAGAAGAAGGGAAAGAAGAAAGGAAAACGTGAACCGAAACCTCACGATATTTGTCACAACTGTCAAGAA AAGGGTCATTGGAGCACGACTTGTACTAAACCAAAGAAACCTAAAGCCGAGTCTAAAGCCGAGTCTAAATCCGCT GGAAATGCAAACGTCGCTGTTGACAATACTAGTACTTCTGGAACTAGTCGTGAAGTTGGAACGCTATACATGGCT TCCAAAACTATGGGAATTCCAACGGGACTACTCCTTGACAGTGCCGCTACTTGCCATATGATCTGTGATTGTTCA TATTTTATCGAATACGAAGCTTGTACGCAACAGCATATTTCTGTTGGAGGTTTCAACAATATCCCTGTTGCTGGA GTCGGAAAGATACGATTCCGTGCTTCATCTCCGAACGTCTTGGAAAACTACAACGATCAGGTGCCGAGATCAGGG GCTTGA
Gene	>Agabi119p4\|758100 ATGGGCCCCGCACTTGGCGAAACGACTTCTGAGACTCTTCAGTTTCCGAAGTTTAACGGAACGAACTATCATTTT TGGGCTGATAATATGAAGGCAGCCTTGCAGGCGAAATCCGTTTGGGGTGTTACTTCTCATCGCGAACGATGCCCA CCTCATCCTGAGGCAGAGTATCCTGGTTTATACACCACTACTTCTCTGACTGTTGAAGGCGAACTTCCTACTCGA GCCAGGAAGGTTGGCCAAGCTCTCATTGATGTCCTTCAGTCAAAGGGATATCTCGCTTGGGAACAAAGTATTGAG AAGTATGAGAGGTGGTTGAACAAGGATGACATGGCAATGGGATTGATTCGGAATGCTATCGAGTACACTCAACGT GAGACCATAATCGACATGAATACGTCCGCGGAGATGTGGGACCATCTTCACCGAACTTATGTTGATCAACAGAGT GGAATAAATATCCACTTCTACTATCAGGAGCTATACTCGAAGAAGTGGGACGGTCATTCATCGATGAGTGATCAC ATTGGGTTTTACCTCAATATCAGACATCGATTTATTGAAGCGGGTCATCGTATCGATAATAACGTTATCATCAAC TCTCTCTTGTTGTCTCTTCCACATACGCCTGTCTGGGAAGTTGTTAAACAAAATCTTCTCTACAATCAAAGTCGG CTTACTCTCAAAAATGTCACTGCGGAACTACTTGCAGTGTTTGATCGTATTCTTCATGAAGATGATGCTAAGGGT TCCAAATCCCTAGCTCTTGTTTCAAAGGGGGATAACGAAGCGAGTGGGAGTAAGAAAGCTGATGGAAAAGAGGGT AAAGGAAAGAAGAAGGGAAAGAAGAAAGGAAAACGTGAACCGAAACCTCACGATATTTGTCACAACTGTCAAGAA AAGGGTCATTGGAGCACGACTTGTACTAAACCAAAGAAACCTAAAGCCGAGTCTAAAGCCGAGTCTAAATCCGCT GGAAATGCAAACGTCGCTGTTGACAATACTAGTACTTCTGGAACTAGTCGTGAAGTTGGAACGCTATACATGGCT TCCAAAACTATGGGAATTCCAACGGGACTACTCCTTGACAGTGCCGCTACTTGCCATATGATCTGTGATTGTTCA TATTTTATCGAATACGAAGCTTGTACGCAACAGCATATTTCTGTTGGAGGTTTCAACAATATCCCTGTTGCTGGA GTCGGAAAGATACGATTCCGTGCTTCATCTCCGAACGGTCATAACGACATCACGCTCGATGATGCTCTTTATATT CCTAACTTGGGAGCGAATCTCATTAGTCTTGGAAAACTACAACGATCAGGTGCCGAGATCAGGGGCTTGA

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