Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|755900
Gene name
Locationscaffold_11:1073745..1074877
Strand-
Gene length (bp)1132
Transcript length (bp)1053
Coding sequence length (bp)1053
Protein length (aa) 351

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13976 gag_pre-integrs GAG-pre-integrase domain 5.8E-11 208 275

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 93 349 2.0E-25
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 93 350 2.0E-16
sp|P0CX64|YG22B_YEAST Transposon Ty2-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR2 PE=3 SV=1 94 334 8.0E-07
sp|P0CX63|YF21B_YEAST Transposon Ty2-F Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-F PE=3 SV=1 94 334 8.0E-07
sp|Q03494|YD22B_YEAST Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR2 PE=3 SV=2 94 334 9.0E-07
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Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 93 349 2.0E-25
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 93 350 2.0E-16
sp|P0CX64|YG22B_YEAST Transposon Ty2-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR2 PE=3 SV=1 94 334 8.0E-07
sp|P0CX63|YF21B_YEAST Transposon Ty2-F Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-F PE=3 SV=1 94 334 8.0E-07
sp|Q03494|YD22B_YEAST Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR2 PE=3 SV=2 94 334 9.0E-07
sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1 94 334 9.0E-07
sp|P0C2J3|YL21B_YEAST Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR1 PE=3 SV=1 94 334 9.0E-07
sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2 94 334 9.0E-07
sp|Q12337|YG21B_YEAST Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR1 PE=5 SV=2 94 334 9.0E-07
sp|Q12491|YB21B_YEAST Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-B PE=3 SV=1 94 334 9.0E-07
sp|P0C2J5|YL22B_YEAST Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR2 PE=5 SV=1 94 334 9.0E-07
sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR1 PE=1 SV=3 94 334 9.0E-07
sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1 94 334 9.0E-07
sp|P93293|M300_ARATH Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1 208 300 2.0E-06
sp|Q12501|YO22B_YEAST Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-OR2 PE=1 SV=1 94 334 3.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|755900
MMLTTEYLIKEPWEHLVSPILLLGHHNLAHCLPKVEDKSCSPPAKWPTSGSGSPGSDIPLRASALGAYSSPSSSP
SFSSSPSSPLQLDADFFWLADTGATSHMTPHRHWFKSYSPHRIPIRLADNSTVYSAGVGSVVFQPVVNGKETRAV
KFTRVLHVPDLRSNLLSCLYLARHKGFNIIISAHSIDFKYQGRTLFTATIHSNNSAELDGSTVTSETAFSVSTLP
VDLSLWHRRFIHHNYADVKSMISKDLVSGLKLESNSSPDSICEPCLAGKMHSLPFPSSLNHNRSPLELVHSDLHG
PLPVASHSGYKYWITFIDDATRFRAVYLLKAKSEAFEAFKVYKSWAETQL*
Coding >Agabi119p4|755900
ATGATGCTCACCACAGAATATCTAATCAAGGAACCGTGGGAACATTTGGTGTCACCCATATTATTGCTTGGTCAT
CACAACCTAGCTCACTGCTTACCTAAGGTAGAGGATAAATCCTGCTCACCCCCAGCCAAATGGCCGACGTCTGGT
TCTGGCTCTCCTGGCTCTGATATTCCACTGAGAGCATCCGCTCTTGGTGCTTATTCCTCTCCCTCATCCTCTCCC
TCATTCTCTTCCTCACCATCCTCACCACTACAGCTTGATGCTGACTTTTTCTGGCTGGCTGATACTGGTGCTACA
TCCCACATGACTCCTCACCGCCATTGGTTCAAATCCTACTCCCCTCATCGTATCCCTATCCGCCTTGCTGATAAC
TCTACTGTCTATTCAGCTGGTGTAGGGTCTGTTGTCTTTCAACCAGTGGTGAATGGAAAAGAGACTAGAGCGGTC
AAGTTTACACGAGTCCTTCATGTTCCTGACCTCAGGAGTAATCTCTTATCATGCCTTTACCTTGCCCGACACAAG
GGCTTCAATATCATCATCTCTGCTCATTCTATTGACTTCAAATACCAAGGGAGAACGCTTTTCACGGCCACTATC
CATTCCAACAACTCTGCTGAGCTTGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCA
GTTGACCTCTCACTGTGGCATCGTCGCTTTATTCATCACAACTACGCTGATGTGAAGTCTATGATCAGTAAGGAT
CTAGTTTCCGGGCTCAAACTCGAGTCTAACTCGTCCCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATG
CATTCCCTTCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTAGTGCATTCAGATCTTCACGGA
CCGCTACCAGTCGCTTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGATGCCACACGTTTCCGGGCA
GTCTATCTGCTTAAAGCAAAGTCGGAGGCATTTGAAGCCTTCAAAGTCTACAAATCCTGGGCTGAGACTCAACTC
TGA
Transcript >Agabi119p4|755900
ATGATGCTCACCACAGAATATCTAATCAAGGAACCGTGGGAACATTTGGTGTCACCCATATTATTGCTTGGTCAT
CACAACCTAGCTCACTGCTTACCTAAGGTAGAGGATAAATCCTGCTCACCCCCAGCCAAATGGCCGACGTCTGGT
TCTGGCTCTCCTGGCTCTGATATTCCACTGAGAGCATCCGCTCTTGGTGCTTATTCCTCTCCCTCATCCTCTCCC
TCATTCTCTTCCTCACCATCCTCACCACTACAGCTTGATGCTGACTTTTTCTGGCTGGCTGATACTGGTGCTACA
TCCCACATGACTCCTCACCGCCATTGGTTCAAATCCTACTCCCCTCATCGTATCCCTATCCGCCTTGCTGATAAC
TCTACTGTCTATTCAGCTGGTGTAGGGTCTGTTGTCTTTCAACCAGTGGTGAATGGAAAAGAGACTAGAGCGGTC
AAGTTTACACGAGTCCTTCATGTTCCTGACCTCAGGAGTAATCTCTTATCATGCCTTTACCTTGCCCGACACAAG
GGCTTCAATATCATCATCTCTGCTCATTCTATTGACTTCAAATACCAAGGGAGAACGCTTTTCACGGCCACTATC
CATTCCAACAACTCTGCTGAGCTTGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCA
GTTGACCTCTCACTGTGGCATCGTCGCTTTATTCATCACAACTACGCTGATGTGAAGTCTATGATCAGTAAGGAT
CTAGTTTCCGGGCTCAAACTCGAGTCTAACTCGTCCCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATG
CATTCCCTTCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTAGTGCATTCAGATCTTCACGGA
CCGCTACCAGTCGCTTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGATGCCACACGTTTCCGGGCA
GTCTATCTGCTTAAAGCAAAGTCGGAGGCATTTGAAGCCTTCAAAGTCTACAAATCCTGGGCTGAGACTCAACTC
TGA
Gene >Agabi119p4|755900
ATGATGCTCACCACAGAATATCTAATCAAGGAACCGTGGGAACATTTGGTGTCACCCATATTATTGCTTGGTCAT
CACAACCTAGCTCACTGCTTACCTAAGGTAGAGGATAAATCCTGCTCACCCCCAGGTTCGAACGCAGGACCACTG
GTGAACGAGCGCTAGTGCCAGGCAGGAAACGCCTACATCCTGACAAAATGCCCACTCAGCCAAATGGCCGACGTC
TGGTTCTGGCTCTCCTGGCTCTGATATTCCACTGAGAGCATCCGCTCTTGGTGCTTATTCCTCTCCCTCATCCTC
TCCCTCATTCTCTTCCTCACCATCCTCACCACTACAGCTTGATGCTGACTTTTTCTGGCTGGCTGATACTGGTGC
TACATCCCACATGACTCCTCACCGCCATTGGTTCAAATCCTACTCCCCTCATCGTATCCCTATCCGCCTTGCTGA
TAACTCTACTGTCTATTCAGCTGGTGTAGGGTCTGTTGTCTTTCAACCAGTGGTGAATGGAAAAGAGACTAGAGC
GGTCAAGTTTACACGAGTCCTTCATGTTCCTGACCTCAGGAGTAATCTCTTATCATGCCTTTACCTTGCCCGACA
CAAGGGCTTCAATATCATCATCTCTGCTCATTCTATTGACTTCAAATACCAAGGGAGAACGCTTTTCACGGCCAC
TATCCATTCCAACAACTCTGCTGAGCTTGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCT
CCCAGTTGACCTCTCACTGTGGCATCGTCGCTTTATTCATCACAACTACGCTGATGTGAAGTCTATGATCAGTAA
GGATCTAGTTTCCGGGCTCAAACTCGAGTCTAACTCGTCCCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAA
GATGCATTCCCTTCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTAGTGCATTCAGATCTTCA
CGGACCGCTACCAGTCGCTTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGATGCCACACGTTTCCG
GGCAGTCTATCTGCTTAAAGCAAAGTCGGAGGCATTTGAAGCCTTCAAAGTCTACAAATCCTGGGCTGAGACTCA
ACTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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