© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|753050 |
| Gene name | |
| Location | scaffold_11:850380..851754 |
| Strand | + |
| Gene length (bp) | 1374 |
| Transcript length (bp) | 987 |
| Coding sequence length (bp) | 987 |
| Protein length (aa) | 329 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01753 | zf-MYND | MYND finger | 3.1E-08 | 145 | 181 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FPS9|UBP15_ARATH | Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 | 130 | 181 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|753050 MALNLRDKELFPTFGQLPSDTPDDGYDVDYFEFDEYLGVIEPIHHWCLLVEITEVVPYIRPTYYGKDVDGTAVFI VFYTDDRSPQIARNCNVGNTLALMYAETHMFNDGQVGIRVDSDDYVKLFHSTLQGVFQIDELLNSKMTSCHLCDK PAKSQCINCQVKYCSKDCQVADWKPRHKDECRKSVKVDTPLLIDRIQASLRTLKYHHQSKFPDDPRRPSNDTPQE DIWYKWVLLAAPATMLDARTRAGEKLFPNHSISFDARFKLPQGKISDGRSLYLGSGLRFIDTLRPNVGASCLKAS TFTSKLGKLAIPSDVPPHTCSSRSKLRT* |
| Coding | >Agabi119p4|753050 ATGGCTCTTAACCTCAGAGACAAGGAACTGTTCCCGACCTTTGGGCAGCTACCTTCCGACACACCCGACGATGGC TACGACGTTGACTACTTCGAATTCGACGAATATTTGGGTGTCATAGAGCCCATTCACCACTGGTGCCTCCTCGTA GAAATCACCGAAGTCGTCCCCTACATTCGCCCCACGTACTATGGCAAGGACGTAGATGGAACTGCTGTATTCATC GTTTTCTACACCGACGATCGTTCCCCTCAGATCGCGCGCAACTGCAATGTGGGGAATACGTTAGCACTCATGTAC GCCGAAACACACATGTTCAATGACGGACAGGTGGGCATTCGAGTCGACTCGGATGACTATGTCAAGCTGTTCCAT TCTACACTGCAAGGTGTCTTTCAAATTGACGAGTTGCTCAACTCAAAGATGACGTCTTGTCACCTTTGCGACAAA CCAGCGAAATCTCAGTGCATAAACTGCCAAGTCAAATATTGCAGCAAGGACTGTCAGGTCGCCGATTGGAAACCC AGGCACAAGGATGAATGCAGAAAGTCTGTAAAAGTCGATACTCCCCTTTTAATCGATCGCATTCAAGCCTCGTTA CGAACCCTCAAATACCATCATCAGAGCAAGTTCCCCGATGATCCTCGCAGACCTTCCAATGATACACCGCAGGAA GACATATGGTACAAATGGGTTTTATTAGCCGCTCCTGCCACGATGCTCGATGCACGAACCCGAGCCGGGGAAAAG CTCTTTCCCAACCACTCAATATCATTCGATGCGAGATTTAAACTTCCGCAAGGTAAAATTTCGGATGGAAGGAGT CTGTATCTGGGCTCGGGTCTCAGATTCATTGACACGCTCCGACCGAATGTCGGCGCCTCGTGCCTCAAGGCCTCA ACGTTTACAAGCAAGTTGGGCAAACTGGCTATCCCATCAGATGTGCCGCCACATACTTGCTCTTCTCGCTCCAAA CTTCGAACCTGA |
| Transcript | >Agabi119p4|753050 ATGGCTCTTAACCTCAGAGACAAGGAACTGTTCCCGACCTTTGGGCAGCTACCTTCCGACACACCCGACGATGGC TACGACGTTGACTACTTCGAATTCGACGAATATTTGGGTGTCATAGAGCCCATTCACCACTGGTGCCTCCTCGTA GAAATCACCGAAGTCGTCCCCTACATTCGCCCCACGTACTATGGCAAGGACGTAGATGGAACTGCTGTATTCATC GTTTTCTACACCGACGATCGTTCCCCTCAGATCGCGCGCAACTGCAATGTGGGGAATACGTTAGCACTCATGTAC GCCGAAACACACATGTTCAATGACGGACAGGTGGGCATTCGAGTCGACTCGGATGACTATGTCAAGCTGTTCCAT TCTACACTGCAAGGTGTCTTTCAAATTGACGAGTTGCTCAACTCAAAGATGACGTCTTGTCACCTTTGCGACAAA CCAGCGAAATCTCAGTGCATAAACTGCCAAGTCAAATATTGCAGCAAGGACTGTCAGGTCGCCGATTGGAAACCC AGGCACAAGGATGAATGCAGAAAGTCTGTAAAAGTCGATACTCCCCTTTTAATCGATCGCATTCAAGCCTCGTTA CGAACCCTCAAATACCATCATCAGAGCAAGTTCCCCGATGATCCTCGCAGACCTTCCAATGATACACCGCAGGAA GACATATGGTACAAATGGGTTTTATTAGCCGCTCCTGCCACGATGCTCGATGCACGAACCCGAGCCGGGGAAAAG CTCTTTCCCAACCACTCAATATCATTCGATGCGAGATTTAAACTTCCGCAAGGTAAAATTTCGGATGGAAGGAGT CTGTATCTGGGCTCGGGTCTCAGATTCATTGACACGCTCCGACCGAATGTCGGCGCCTCGTGCCTCAAGGCCTCA ACGTTTACAAGCAAGTTGGGCAAACTGGCTATCCCATCAGATGTGCCGCCACATACTTGCTCTTCTCGCTCCAAA CTTCGAACCTGA |
| Gene | >Agabi119p4|753050 ATGGCTCTTAACCTCAGAGACAAGGTAGACCACTTTTCTGACTAGACGCGTATCCCTACTGAGCCATGATAGGAA CTGTTCCCGACCTTTGGGCAGCTACCTTCCGACACACCCGACGATGGCTACGACGTTGACTACTTCGAATTCGAC GAATATTTGGGTGTCATAGAGCCCATTCACCACTGGTGCCTCCTCGTAGAAATCACCGAAGTCGTCCCCTACATT CGCCCCACGTACTATGGCAAGGACGTAGATGGAACTGCTGTATTCATCGTTTTCTACACCGACGATCGTTCCCCT CAGATCGCGCGCAACTGCAATGTGGGGAATACGTTAGCACTCATGTACGCCGAAACACACATGTTCAATGACGGA CAGGTGGGCATTCGAGTCGACTCGGATGACTATGTCAAGGTGTGCCATCTCATTCCATTACCGCGACTTCAAAAT ATAACTACGTTTTTAGCTGTTCCATTCTACACTGCAAGGTGTCTTTCAAATTGACGAGTTGCTCAACTCAAAGAT GACGTCTTGTCACCTTTGCGACAAACCAGCGAAATCTCAGTGCATAAACTGCCAAGTCAAATATTGCAGCAAGGT ATATATATATACCATACTTTCTTACTCGCCACTTACCTTTTGTCGATGTAGGACTGTCAGGTCGCCGATTGGAAA CCCAGGCACAAGGATGAATGCAGAGTAGGAAAATGCATCAAACAGTGGAAGTCCTTCAATTGGTGGGACTTTGAC GATTATAGAAGTCTGTAAAAGGTGCAACTTTACTCCAGCTTTTTTAATTTTTCGAGCCATGGCATGACTACGGTT AATACTAGTCGATACTCCCCTTTTAATCGATCGCATTCAAGCCTCGTTACGAACCCTCAGTATGCCGGACGCTAT AAATCAGCCCAGGTTGACATTACGCTATTCTTAGAATACCATCATCAGAGCAAGTTCCCCGATGATGTAACTTGA CCCCCACCTTCACGAGTCCATACATTTCACTGTGCCCACCCTGAGTGTCCCCAGCCTCGCAGACCTTCCAATGAT ACACCGCAGGAAGACATATGGTACAAATGGGTTTTATTAGCCGCTCCTGCCACGATGCTCGATGCACGAACCCGA GCCGGGGAAAAGCTCTTTCCCAACCACTCAATATCATTCGATGCGAGATTTAAACTTCCGCAAGGTAAAATTTCG GATGGAAGGAGTCTGTATCTGGGCTCGGGTCTCAGATTCATTGACACGCTCCGACCGAATGTCGGCGCCTCGTGC CTCAAGGCCTCAACGTTTACAAGCAAGTTGGGCAAACTGGCTATCCCATCAGATGTGCCGCCACATACTTGCTCT TCTCGCTCCAAACTTCGAACCTGA |