© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|748850 |
| Gene name | |
| Location | scaffold_11:346980..348881 |
| Strand | - |
| Gene length (bp) | 1901 |
| Transcript length (bp) | 1836 |
| Coding sequence length (bp) | 1836 |
| Protein length (aa) | 612 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | 2.1E-09 | 236 | 273 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 295 | 535 | 2.0E-09 |
| sp|Q7LHG5|YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 | 227 | 544 | 5.0E-08 |
| sp|Q99315|YG31B_YEAST | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 | 227 | 544 | 5.0E-08 |
| sp|A1Z651|POL_XMRV6 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1 | 296 | 435 | 2.0E-07 |
| sp|P08361|POL_MLVCB | Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=gag-pol PE=3 SV=1 | 296 | 435 | 2.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 295 | 535 | 2.0E-09 |
| sp|Q7LHG5|YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 | 227 | 544 | 5.0E-08 |
| sp|Q99315|YG31B_YEAST | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 | 227 | 544 | 5.0E-08 |
| sp|A1Z651|POL_XMRV6 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1 | 296 | 435 | 2.0E-07 |
| sp|P08361|POL_MLVCB | Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=gag-pol PE=3 SV=1 | 296 | 435 | 2.0E-07 |
| sp|Q2F7J0|POL_XMRV4 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1 | 296 | 435 | 2.0E-07 |
| sp|P03355|POL_MLVMS | Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4 | 296 | 466 | 2.0E-07 |
| sp|Q2F7J3|POL_XMRV3 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1 | 296 | 435 | 2.0E-07 |
| sp|P26808|POL_MLVFP | Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 | 296 | 435 | 4.0E-07 |
| sp|P26810|POL_MLVF5 | Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 | 296 | 435 | 4.0E-07 |
| sp|P26809|POL_MLVFF | Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 | 296 | 435 | 4.0E-07 |
| sp|P03356|POL_MLVAV | Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 | 296 | 435 | 9.0E-07 |
| sp|P11227|POL_MLVRD | Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 | 296 | 435 | 2.0E-06 |
| sp|P31795|POL_MLVRK | Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1 | 296 | 435 | 2.0E-06 |
| sp|P31792|POL_FENV1 | Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 | 294 | 463 | 3.0E-06 |
| sp|O92815|POL_WDSV | Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1 SV=2 | 306 | 430 | 5.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|748850 MLNNPGKLPNATVNRWVDYIRTHFHFTLLHKKGKSFGPDGLSRRKWYPGDPLARRFDDGSEDGEEDFELVKENPD DEDPLPLEAFVDEIDNRTGYLQQIINDTPVYQLARVATEQEIQQRARLATSDNCLATYKVFLGQVATLEQSALEA SEDDQISPYDEDRRTLEAKRQDAQLPAIREWLANDPKNVDLHKMSPAKARFVRAASHFWLDKEGRLFRKIAGAGF PQLVVEIEDHMRIMRECHDKLGHRGAYATSKLIAQRFWWPEVDGDVACYPYPFYISSVACGYCSYDSTFNGCKYI VHGRCALSSWMEARALRKEDAKAIGTWIFEDIICRWGSLVKIVTDNGSAFRKAVKWLEEKYGIKGVAISPYNSQA NGVIERPHWDVRQMLYKATAGDVKKWFWHLHHVAWADRITVRKGTGCSPYFMITGAHPTLPLDIIEATWLVKFPE TLVSTADLIGLRAQALAKHVTHVEQMRQRVNDEKLRRALQLEQTMQHKIKEFNLKSGDLALVRNSAIEMSADRKM KSRYLGPVVIVKRLKGGAYIVCEYDGSVWQNKVAAFRVVPYLARQKITLSDKVQQLLDADIEELQLLEETTVDSD TGNVSEHEDNA* |
| Coding | >Agabi119p4|748850 ATGTTAAACAATCCTGGAAAGCTACCAAATGCAACGGTGAATCGCTGGGTGGACTACATCAGAACTCACTTCCAT TTTACGCTTCTACACAAGAAAGGAAAAAGCTTTGGGCCAGACGGCCTATCGCGACGTAAATGGTACCCAGGGGAT CCCTTAGCTAGACGATTCGATGATGGCTCCGAGGACGGAGAAGAGGACTTCGAACTAGTCAAGGAAAACCCTGAC GACGAAGATCCTCTACCTCTTGAAGCTTTTGTCGACGAAATCGATAATCGAACAGGTTACCTTCAGCAGATAATA AATGATACTCCGGTCTATCAACTGGCAAGAGTAGCTACAGAACAAGAAATACAGCAGCGAGCTCGACTAGCTACT AGCGATAATTGTCTAGCTACATACAAAGTATTCTTAGGACAAGTGGCAACGCTAGAACAGTCAGCTTTAGAAGCA TCAGAAGATGATCAGATCAGTCCCTACGATGAGGATAGACGCACCCTTGAAGCAAAGCGTCAAGATGCACAGCTA CCAGCAATCAGAGAATGGCTAGCTAACGACCCAAAGAACGTGGACCTCCATAAAATGAGTCCAGCTAAAGCTCGT TTTGTGAGAGCAGCTTCCCACTTCTGGCTAGATAAGGAAGGGAGACTCTTTCGAAAGATTGCAGGAGCCGGATTT CCTCAGCTAGTGGTCGAAATAGAAGATCACATGAGAATAATGCGAGAATGCCATGATAAGCTAGGACATCGAGGC GCTTATGCAACTAGTAAACTAATAGCTCAGCGCTTCTGGTGGCCAGAAGTAGATGGAGATGTAGCTTGTTACCCA TACCCCTTCTATATTTCAAGTGTTGCATGCGGATACTGTTCATATGACTCCACCTTCAACGGATGTAAATACATT GTTCATGGAAGGTGTGCGTTGTCATCTTGGATGGAAGCTAGAGCACTTAGGAAGGAAGATGCTAAAGCTATTGGA ACTTGGATCTTCGAAGACATTATATGTCGATGGGGTAGCCTTGTGAAAATAGTCACAGACAATGGATCAGCATTT AGAAAAGCAGTCAAGTGGCTTGAAGAAAAGTATGGCATTAAAGGGGTAGCTATCTCCCCATACAATTCACAAGCT AACGGAGTAATCGAGCGTCCTCACTGGGATGTCAGGCAAATGCTATACAAAGCTACAGCCGGAGATGTAAAGAAA TGGTTCTGGCATCTTCATCACGTAGCTTGGGCAGACAGAATCACTGTAAGAAAGGGAACTGGATGTTCTCCTTAC TTCATGATCACTGGCGCACATCCGACGTTGCCTCTAGACATAATCGAAGCAACTTGGTTGGTCAAATTCCCTGAG ACACTCGTTTCCACAGCAGACTTGATTGGATTAAGAGCGCAAGCTCTAGCTAAGCACGTAACTCATGTCGAACAA ATGCGACAAAGAGTCAACGATGAGAAGCTAAGACGAGCTCTTCAGTTAGAACAAACCATGCAGCATAAAATAAAA GAGTTCAATCTAAAGTCAGGCGATCTAGCTTTAGTACGAAATTCAGCTATCGAAATGTCAGCGGACAGAAAAATG AAATCTAGATATCTGGGGCCCGTAGTAATAGTCAAAAGACTCAAAGGCGGAGCCTACATAGTTTGCGAGTACGAC GGATCAGTTTGGCAAAATAAAGTGGCAGCATTTCGTGTTGTACCGTACTTAGCTAGACAAAAGATCACACTCAGC GACAAAGTTCAACAGCTATTGGACGCAGATATCGAAGAACTACAGCTCCTAGAAGAAACCACAGTAGACTCCGAC ACAGGTAATGTCTCAGAACATGAGGACAATGCCTAG |
| Transcript | >Agabi119p4|748850 ATGTTAAACAATCCTGGAAAGCTACCAAATGCAACGGTGAATCGCTGGGTGGACTACATCAGAACTCACTTCCAT TTTACGCTTCTACACAAGAAAGGAAAAAGCTTTGGGCCAGACGGCCTATCGCGACGTAAATGGTACCCAGGGGAT CCCTTAGCTAGACGATTCGATGATGGCTCCGAGGACGGAGAAGAGGACTTCGAACTAGTCAAGGAAAACCCTGAC GACGAAGATCCTCTACCTCTTGAAGCTTTTGTCGACGAAATCGATAATCGAACAGGTTACCTTCAGCAGATAATA AATGATACTCCGGTCTATCAACTGGCAAGAGTAGCTACAGAACAAGAAATACAGCAGCGAGCTCGACTAGCTACT AGCGATAATTGTCTAGCTACATACAAAGTATTCTTAGGACAAGTGGCAACGCTAGAACAGTCAGCTTTAGAAGCA TCAGAAGATGATCAGATCAGTCCCTACGATGAGGATAGACGCACCCTTGAAGCAAAGCGTCAAGATGCACAGCTA CCAGCAATCAGAGAATGGCTAGCTAACGACCCAAAGAACGTGGACCTCCATAAAATGAGTCCAGCTAAAGCTCGT TTTGTGAGAGCAGCTTCCCACTTCTGGCTAGATAAGGAAGGGAGACTCTTTCGAAAGATTGCAGGAGCCGGATTT CCTCAGCTAGTGGTCGAAATAGAAGATCACATGAGAATAATGCGAGAATGCCATGATAAGCTAGGACATCGAGGC GCTTATGCAACTAGTAAACTAATAGCTCAGCGCTTCTGGTGGCCAGAAGTAGATGGAGATGTAGCTTGTTACCCA TACCCCTTCTATATTTCAAGTGTTGCATGCGGATACTGTTCATATGACTCCACCTTCAACGGATGTAAATACATT GTTCATGGAAGGTGTGCGTTGTCATCTTGGATGGAAGCTAGAGCACTTAGGAAGGAAGATGCTAAAGCTATTGGA ACTTGGATCTTCGAAGACATTATATGTCGATGGGGTAGCCTTGTGAAAATAGTCACAGACAATGGATCAGCATTT AGAAAAGCAGTCAAGTGGCTTGAAGAAAAGTATGGCATTAAAGGGGTAGCTATCTCCCCATACAATTCACAAGCT AACGGAGTAATCGAGCGTCCTCACTGGGATGTCAGGCAAATGCTATACAAAGCTACAGCCGGAGATGTAAAGAAA TGGTTCTGGCATCTTCATCACGTAGCTTGGGCAGACAGAATCACTGTAAGAAAGGGAACTGGATGTTCTCCTTAC TTCATGATCACTGGCGCACATCCGACGTTGCCTCTAGACATAATCGAAGCAACTTGGTTGGTCAAATTCCCTGAG ACACTCGTTTCCACAGCAGACTTGATTGGATTAAGAGCGCAAGCTCTAGCTAAGCACGTAACTCATGTCGAACAA ATGCGACAAAGAGTCAACGATGAGAAGCTAAGACGAGCTCTTCAGTTAGAACAAACCATGCAGCATAAAATAAAA GAGTTCAATCTAAAGTCAGGCGATCTAGCTTTAGTACGAAATTCAGCTATCGAAATGTCAGCGGACAGAAAAATG AAATCTAGATATCTGGGGCCCGTAGTAATAGTCAAAAGACTCAAAGGCGGAGCCTACATAGTTTGCGAGTACGAC GGATCAGTTTGGCAAAATAAAGTGGCAGCATTTCGTGTTGTACCGTACTTAGCTAGACAAAAGATCACACTCAGC GACAAAGTTCAACAGCTATTGGACGCAGATATCGAAGAACTACAGCTCCTAGAAGAAACCACAGTAGACTCCGAC ACAGGTAATGTCTCAGAACATGAGGACAATGCCTAG |
| Gene | >Agabi119p4|748850 ATGTTAAACAATCCTGGAAAGCTACCAAATGCAACGGTGAATCGCTGGGTGGACTACATCAGAACTCACTTCCAT TTTACGCTTCTACACAAGAAAGGAAAAAGCTTTGGGCCAGACGGCCTATCGCGACGTAAATGGTACCCAGGGGAT CCCTTAGCTAGACGATTCGATGATGGCTCCGAGGACGGAGAAGAGGACTTCGAACTAGTCAAGGAAAACCCTGAC GACGAAGATCCTCTACCTCTTGAAGCTTTTGTCGACGAAATCGATAATCGAACAGGTTACCTTCAGCAGATAATA AATGATACTCCGGTCTATCAACTGGCAAGAGTAGCTACAGAACAAGAAATACAGCAGCGAGCTCGACTAGCTACT AGCGATAATTGTCTAGCTACATACAAAGTATTCTTAGGACAAGTGGCAACGCTAGAACAGTCAGCTTTAGAAGCA TCAGAAGATGATCAGATCAGTCCCTACGATGAGGATAGACGCACCCTTGAAGCAAAGCGTCAAGATGCACAGCTA CCAGCAATCAGAGAATGGCTAGCTAACGACCCAAAGAACGTGGACCTCCATAAAATGAGTCCAGCTAAAGCTCGT TTTGTGAGAGCAGCTTCCCACTTCTGGCTAGATAAGGAAGGGAGACTCTTTCGAAAGATTGCAGGAGCCGGATTT CCTCAGCTAGTGGTCGAAATAGAAGATCACATGAGAATAATGCGAGAATGCCATGATAAGCTAGGACATCGAGGC GCTTATGCAACTAGTAAACTAATAGCTCAGCGCTTCTGGTGGCCAGAAGTAGATGGAGATGTAGCTTGGTACGTC AAGTCATGTCATCTCTGCCAAGTCAGACAGAAAATGGCATTAGAATTGCCACCAGTAGTTACCCATACCCCTTCT ATATTTCAAGTGTTGCATGCGGATACTGTTCATATGACTCCACCTTCAACGGATGTAAATACATTGTTCATGGAA GGTGTGCGTTGTCATCTTGGATGGAAGCTAGAGCACTTAGGAAGGAAGATGCTAAAGCTATTGGAACTTGGATCT TCGAAGACATTATATGTCGATGGGGTAGCCTTGTGAAAATAGTCACAGACAATGGATCAGCATTTAGAAAAGCAG TCAAGTGGCTTGAAGAAAAGTATGGCATTAAAGGGGTAGCTATCTCCCCATACAATTCACAAGCTAACGGAGTAA TCGAGCGTCCTCACTGGGATGTCAGGCAAATGCTATACAAAGCTACAGCCGGAGATGTAAAGAAATGGTTCTGGC ATCTTCATCACGTAGCTTGGGCAGACAGAATCACTGTAAGAAAGGGAACTGGATGTTCTCCTTACTTCATGATCA CTGGCGCACATCCGACGTTGCCTCTAGACATAATCGAAGCAACTTGGTTGGTCAAATTCCCTGAGACACTCGTTT CCACAGCAGACTTGATTGGATTAAGAGCGCAAGCTCTAGCTAAGCACGTAACTCATGTCGAACAAATGCGACAAA GAGTCAACGATGAGAAGCTAAGACGAGCTCTTCAGTTAGAACAAACCATGCAGCATAAAATAAAAGAGTTCAATC TAAAGTCAGGCGATCTAGCTTTAGTACGAAATTCAGCTATCGAAATGTCAGCGGACAGAAAAATGAAATCTAGAT ATCTGGGGCCCGTAGTAATAGTCAAAAGACTCAAAGGCGGAGCCTACATAGTTTGCGAGTACGACGGATCAGTTT GGCAAAATAAAGTGGCAGCATTTCGTGTTGTACCGTACTTAGCTAGACAAAAGATCACACTCAGCGACAAAGTTC AACAGCTATTGGACGCAGATATCGAAGAACTACAGCTCCTAGAAGAAACCACAGTAGACTCCGACACAGGTAATG TCTCAGAACATGAGGACAATGCCTAG |