Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|744800
Gene name
Locationscaffold_10:1731342..1732374
Strand+
Gene length (bp)1032
Transcript length (bp)1032
Coding sequence length (bp)1032
Protein length (aa) 344

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17921 Integrase_H2C2 Integrase zinc binding domain 5.9E-20 27 83
PF00665 rve Integrase core domain 7.0E-12 101 197

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 14 343 9.0E-46
sp|P0CT40|TF29_SCHPO Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 14 343 1.0E-45
sp|P0CT37|TF24_SCHPO Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 14 343 1.0E-45
sp|P0CT35|TF22_SCHPO Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 14 343 1.0E-45
sp|P0CT34|TF21_SCHPO Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 14 343 1.0E-45
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Swissprot ID Swissprot Description Start End E-value
sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 14 343 9.0E-46
sp|P0CT40|TF29_SCHPO Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 14 343 1.0E-45
sp|P0CT37|TF24_SCHPO Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 14 343 1.0E-45
sp|P0CT35|TF22_SCHPO Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 14 343 1.0E-45
sp|P0CT34|TF21_SCHPO Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 14 343 1.0E-45
sp|P0CT39|TF26_SCHPO Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 14 343 1.0E-45
sp|P0CT38|TF25_SCHPO Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 14 343 1.0E-45
sp|P0CT36|TF23_SCHPO Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 14 343 1.0E-45
sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 14 343 1.0E-45
sp|P0CT43|TF28_SCHPO Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 14 343 1.0E-45
sp|P0CT42|TF27_SCHPO Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 14 343 1.0E-45
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 14 343 2.0E-45
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 14 343 1.0E-44
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 13 254 5.0E-30
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 25 341 2.0E-28
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 10 280 9.0E-28
sp|Q87040|POL_SFVCP Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 18 278 2.0E-26
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 19 280 7.0E-26
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 18 278 7.0E-25
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 11 278 4.0E-24
sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1 34 306 2.0E-21
sp|P08361|POL_MLVCB Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=gag-pol PE=3 SV=1 107 342 6.0E-20
sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 8 302 3.0E-19
sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 8 302 9.0E-19
sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1 8 302 1.0E-18
sp|P31795|POL_MLVRK Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1 98 342 2.0E-18
sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 98 342 2.0E-18
sp|P03355|POL_MLVMS Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4 122 342 2.0E-18
sp|Q8K259|GIN1_MOUSE Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2 8 302 1.0E-17
sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 98 342 1.0E-17
sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 98 342 2.0E-17
sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 98 342 2.0E-17
sp|A1Z651|POL_XMRV6 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1 98 342 2.0E-17
sp|Q2F7J0|POL_XMRV4 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1 98 342 2.0E-17
sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 98 342 3.0E-17
sp|Q2F7J3|POL_XMRV3 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1 98 342 3.0E-17
sp|Q5DTZ0|NYNRI_MOUSE Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2 17 341 1.0E-16
sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1 8 257 2.0E-16
sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 17 342 8.0E-16
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1 30 225 5.0E-14
sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 56 317 7.0E-14
sp|P03360|POL_AVIRE Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1 19 257 2.0E-13
sp|Q9P2P1|NYNRI_HUMAN Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3 17 249 2.0E-13
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1 45 257 1.0E-12
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1 44 329 2.0E-10
sp|P03359|POL_WMSV Pol polyprotein (Fragment) OS=Woolly monkey sarcoma virus GN=pol PE=3 SV=1 99 257 4.0E-10
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1 23 248 3.0E-09
sp|O92815|POL_WDSV Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1 SV=2 15 244 3.0E-09
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1 28 254 4.0E-08
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1 28 257 4.0E-08
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GO

GO Term Description Terminal node
GO:0015074 DNA integration Yes
GO:0044260 cellular macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009987 cellular process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0044238 primary metabolic process No
GO:0071704 organic substance metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0043170 macromolecule metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0006259 DNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|744800
MKKQPEKVWENKGIIYRQGRIYVPDNQEIRDFILHDHHNSPDAGHPGTYRMLESVKQTFWWPTIKTDIRRYVRGC
DMCQKNKTIRRPDHIPLNPLPIPDKPWEEISIDMIGPLPKSKEKDAIIVIVDRFSKMIHLVPTITSLTSTDLAEI
YKEEVWRHHGIPKRIISDRGPQFASKFMESLCTALGIERNLSTAYHPQTDGQTERMNQEIETYLRAFINYRQDDW
TRWLPMAEFHYNDKTHAATGQTPFFLNYGLHPWKGNITIETTNPTATSLIEELENVRKEAKAAMEANNEMMRERG
NNKHHKEPFAEGDKVWLETTNIHSNRPTRKLDHKRYGPFEILK*
Coding >Agabi119p4|744800
ATGAAGAAGCAACCAGAGAAAGTATGGGAGAACAAAGGAATCATTTACCGACAAGGAAGGATCTATGTTCCGGAT
AACCAGGAAATCAGAGATTTCATCCTTCACGATCATCATAATTCCCCCGACGCCGGACATCCTGGAACATACCGA
ATGCTAGAATCAGTTAAACAAACCTTTTGGTGGCCTACGATCAAAACGGATATCAGAAGATATGTCAGAGGATGC
GACATGTGCCAGAAGAACAAAACGATTCGACGACCCGATCACATTCCGCTTAACCCATTACCCATCCCCGACAAA
CCTTGGGAAGAAATATCTATAGACATGATCGGACCACTACCGAAGTCAAAAGAGAAGGATGCTATTATTGTTATC
GTTGACAGATTTTCTAAAATGATCCACCTCGTTCCCACCATCACGTCACTCACATCCACGGATCTAGCGGAAATC
TACAAGGAAGAAGTTTGGCGACATCACGGAATTCCGAAGCGTATTATCAGTGACAGAGGACCACAATTCGCATCG
AAATTTATGGAATCACTATGCACAGCGCTAGGCATTGAACGAAACCTTTCTACGGCCTACCACCCACAGACAGAC
GGACAAACGGAGCGGATGAACCAGGAAATTGAGACTTATCTTCGAGCGTTCATCAATTATCGACAAGACGATTGG
ACAAGATGGCTTCCTATGGCAGAATTCCATTACAACGACAAAACCCACGCTGCCACCGGACAAACCCCATTCTTC
CTGAATTACGGACTTCATCCATGGAAAGGAAATATCACAATTGAAACAACAAACCCCACCGCCACCTCCTTGATC
GAAGAATTAGAGAATGTACGGAAAGAAGCTAAAGCTGCGATGGAAGCAAACAACGAGATGATGAGAGAAAGAGGA
AACAACAAGCACCACAAGGAACCCTTTGCCGAAGGAGATAAAGTTTGGTTAGAAACGACAAACATTCATTCCAAT
CGTCCGACTCGGAAACTAGACCACAAACGATATGGACCCTTTGAAATCTTGAAATAA
Transcript >Agabi119p4|744800
ATGAAGAAGCAACCAGAGAAAGTATGGGAGAACAAAGGAATCATTTACCGACAAGGAAGGATCTATGTTCCGGAT
AACCAGGAAATCAGAGATTTCATCCTTCACGATCATCATAATTCCCCCGACGCCGGACATCCTGGAACATACCGA
ATGCTAGAATCAGTTAAACAAACCTTTTGGTGGCCTACGATCAAAACGGATATCAGAAGATATGTCAGAGGATGC
GACATGTGCCAGAAGAACAAAACGATTCGACGACCCGATCACATTCCGCTTAACCCATTACCCATCCCCGACAAA
CCTTGGGAAGAAATATCTATAGACATGATCGGACCACTACCGAAGTCAAAAGAGAAGGATGCTATTATTGTTATC
GTTGACAGATTTTCTAAAATGATCCACCTCGTTCCCACCATCACGTCACTCACATCCACGGATCTAGCGGAAATC
TACAAGGAAGAAGTTTGGCGACATCACGGAATTCCGAAGCGTATTATCAGTGACAGAGGACCACAATTCGCATCG
AAATTTATGGAATCACTATGCACAGCGCTAGGCATTGAACGAAACCTTTCTACGGCCTACCACCCACAGACAGAC
GGACAAACGGAGCGGATGAACCAGGAAATTGAGACTTATCTTCGAGCGTTCATCAATTATCGACAAGACGATTGG
ACAAGATGGCTTCCTATGGCAGAATTCCATTACAACGACAAAACCCACGCTGCCACCGGACAAACCCCATTCTTC
CTGAATTACGGACTTCATCCATGGAAAGGAAATATCACAATTGAAACAACAAACCCCACCGCCACCTCCTTGATC
GAAGAATTAGAGAATGTACGGAAAGAAGCTAAAGCTGCGATGGAAGCAAACAACGAGATGATGAGAGAAAGAGGA
AACAACAAGCACCACAAGGAACCCTTTGCCGAAGGAGATAAAGTTTGGTTAGAAACGACAAACATTCATTCCAAT
CGTCCGACTCGGAAACTAGACCACAAACGATATGGACCCTTTGAAATCTTGAAATAA
Gene >Agabi119p4|744800
ATGAAGAAGCAACCAGAGAAAGTATGGGAGAACAAAGGAATCATTTACCGACAAGGAAGGATCTATGTTCCGGAT
AACCAGGAAATCAGAGATTTCATCCTTCACGATCATCATAATTCCCCCGACGCCGGACATCCTGGAACATACCGA
ATGCTAGAATCAGTTAAACAAACCTTTTGGTGGCCTACGATCAAAACGGATATCAGAAGATATGTCAGAGGATGC
GACATGTGCCAGAAGAACAAAACGATTCGACGACCCGATCACATTCCGCTTAACCCATTACCCATCCCCGACAAA
CCTTGGGAAGAAATATCTATAGACATGATCGGACCACTACCGAAGTCAAAAGAGAAGGATGCTATTATTGTTATC
GTTGACAGATTTTCTAAAATGATCCACCTCGTTCCCACCATCACGTCACTCACATCCACGGATCTAGCGGAAATC
TACAAGGAAGAAGTTTGGCGACATCACGGAATTCCGAAGCGTATTATCAGTGACAGAGGACCACAATTCGCATCG
AAATTTATGGAATCACTATGCACAGCGCTAGGCATTGAACGAAACCTTTCTACGGCCTACCACCCACAGACAGAC
GGACAAACGGAGCGGATGAACCAGGAAATTGAGACTTATCTTCGAGCGTTCATCAATTATCGACAAGACGATTGG
ACAAGATGGCTTCCTATGGCAGAATTCCATTACAACGACAAAACCCACGCTGCCACCGGACAAACCCCATTCTTC
CTGAATTACGGACTTCATCCATGGAAAGGAAATATCACAATTGAAACAACAAACCCCACCGCCACCTCCTTGATC
GAAGAATTAGAGAATGTACGGAAAGAAGCTAAAGCTGCGATGGAAGCAAACAACGAGATGATGAGAGAAAGAGGA
AACAACAAGCACCACAAGGAACCCTTTGCCGAAGGAGATAAAGTTTGGTTAGAAACGACAAACATTCATTCCAAT
CGTCCGACTCGGAAACTAGACCACAAACGATATGGACCCTTTGAAATCTTGAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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