© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|737200 |
| Gene name | |
| Location | scaffold_10:1095913..1097155 |
| Strand | - |
| Gene length (bp) | 1242 |
| Transcript length (bp) | 1242 |
| Coding sequence length (bp) | 1242 |
| Protein length (aa) | 414 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04088 | Peroxin-13_N | Peroxin 13, N-terminal region | 4.3E-43 | 164 | 292 |
| PF07653 | SH3_2 | Variant SH3 domain | 3.6E-09 | 331 | 397 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P80667|PEX13_YEAST | Peroxisomal membrane protein PAS20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX13 PE=1 SV=1 | 168 | 407 | 3.0E-42 |
| sp|Q92266|PEX13_PICPA | Peroxisomal membrane protein PEX13 OS=Komagataella pastoris GN=PEX13 PE=1 SV=1 | 167 | 402 | 1.0E-35 |
| sp|O14136|PEX13_SCHPO | Peroxisomal membrane protein pex13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pex13 PE=3 SV=1 | 175 | 400 | 3.0E-22 |
| sp|Q9D0K1|PEX13_MOUSE | Peroxisomal membrane protein PEX13 OS=Mus musculus GN=Pex13 PE=1 SV=1 | 100 | 402 | 7.0E-12 |
| sp|Q0P5B1|PEX13_BOVIN | Peroxisomal membrane protein PEX13 OS=Bos taurus GN=PEX13 PE=2 SV=1 | 100 | 412 | 7.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P80667|PEX13_YEAST | Peroxisomal membrane protein PAS20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX13 PE=1 SV=1 | 168 | 407 | 3.0E-42 |
| sp|Q92266|PEX13_PICPA | Peroxisomal membrane protein PEX13 OS=Komagataella pastoris GN=PEX13 PE=1 SV=1 | 167 | 402 | 1.0E-35 |
| sp|O14136|PEX13_SCHPO | Peroxisomal membrane protein pex13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pex13 PE=3 SV=1 | 175 | 400 | 3.0E-22 |
| sp|Q9D0K1|PEX13_MOUSE | Peroxisomal membrane protein PEX13 OS=Mus musculus GN=Pex13 PE=1 SV=1 | 100 | 402 | 7.0E-12 |
| sp|Q0P5B1|PEX13_BOVIN | Peroxisomal membrane protein PEX13 OS=Bos taurus GN=PEX13 PE=2 SV=1 | 100 | 412 | 7.0E-12 |
| sp|Q92968|PEX13_HUMAN | Peroxisomal membrane protein PEX13 OS=Homo sapiens GN=PEX13 PE=1 SV=2 | 97 | 412 | 2.0E-11 |
| sp|Q19951|PEX13_CAEEL | Probable peroxisomal membrane protein PEX13 OS=Caenorhabditis elegans GN=prx-13 PE=3 SV=2 | 157 | 358 | 1.0E-08 |
| sp|Q8I190|SH3G3_DROVI | Endophilin-A OS=Drosophila virilis GN=EndoA PE=3 SV=1 | 313 | 397 | 8.0E-06 |
| sp|Q8I1C0|SH3G3_DROPS | Endophilin-A OS=Drosophila pseudoobscura pseudoobscura GN=EndoA PE=3 SV=1 | 313 | 397 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016560 | protein import into peroxisome matrix, docking | Yes |
| GO:0005777 | peroxisome | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0005575 | cellular_component | No |
| GO:0043229 | intracellular organelle | No |
| GO:0033036 | macromolecule localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051641 | cellular localization | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0005488 | binding | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0043226 | organelle | No |
| GO:0009987 | cellular process | No |
| GO:0008104 | protein localization | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0042579 | microbody | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 273 | 295 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|737200 MVSPPKPWERNGAAVGLSSSSPATATTTTAAPPSVPPPPTSTQSPLPSTSTPASSNPSVPDRPASFTSPTNTMAN PMSSYSSYGTSPYSRLGGTYGGLGSYNSYGGGYGGYGGMGSYGGMGYGGGMGYGMGGMGGMGYGMGPMGGAMGPG GVGLDPYGNPIPTLTQTLESTTQHTFTLLHSIVQTFSGVAQMLESTFMATHSSFFAMVGVIDQFSQLRNALGSVL GLFGLLRWMKDTVTGRDSTMRHEFSDFVQGKSIGPPNAPNQPKPSKKPLIIFLIAILGIPYAMTKLVRILQERAR AQQQNPQGAPLLPGQQQHPLPPLDPSQLTFARTLYPFQPSNPNELGLKENEIVAVMGKLDSRTGMEVDPRLEVEG EWWKGRTREGKEGWFPKKWVEVLERKKLDEQVPGKKLD* |
| Coding | >Agabi119p4|737200 ATGGTCTCTCCGCCAAAACCTTGGGAACGCAACGGCGCTGCTGTCGGCCTCTCTTCCTCATCGCCTGCAACAGCG ACGACGACAACTGCTGCCCCGCCTTCAGTACCGCCCCCACCCACATCCACTCAATCTCCCCTTCCATCCACCTCT ACCCCCGCATCCTCAAATCCAAGCGTTCCAGACCGTCCTGCCTCTTTCACTTCACCCACAAACACCATGGCGAAT CCAATGTCTTCTTACTCTTCCTACGGCACATCGCCGTACTCGCGGCTTGGTGGCACTTACGGAGGTCTCGGATCG TATAACAGTTATGGTGGTGGCTATGGTGGATATGGTGGTATGGGCAGTTATGGTGGTATGGGGTATGGTGGTGGT ATGGGATATGGTATGGGCGGCATGGGCGGCATGGGCTATGGTATGGGTCCTATGGGCGGCGCTATGGGTCCTGGC GGTGTCGGACTTGACCCTTATGGAAACCCTATCCCCACTCTTACTCAAACTCTCGAGTCTACCACTCAACATACC TTCACTCTCCTCCATTCTATCGTCCAAACTTTCTCTGGCGTTGCTCAGATGCTGGAAAGCACTTTTATGGCGACG CATTCATCGTTTTTCGCTATGGTTGGGGTTATCGATCAGTTTAGTCAGTTGAGGAATGCTCTTGGGAGTGTTTTA GGGTTGTTTGGGCTTTTGAGGTGGATGAAGGATACGGTCACGGGGAGGGATTCGACGATGCGGCATGAATTCTCA GATTTCGTGCAGGGGAAATCGATAGGCCCACCAAATGCTCCGAATCAACCTAAACCAAGCAAAAAACCCTTGATT ATCTTCCTCATCGCTATCCTTGGTATACCCTACGCCATGACAAAACTTGTCAGAATTCTACAAGAACGAGCTCGC GCTCAACAACAAAACCCTCAAGGCGCACCACTCCTTCCTGGACAGCAACAACACCCTTTACCCCCTCTTGATCCC TCTCAACTCACATTTGCAAGAACATTATATCCCTTCCAACCCAGTAATCCAAACGAATTAGGATTGAAGGAAAAT GAAATTGTAGCGGTTATGGGGAAATTGGATTCGAGAACGGGGATGGAGGTGGATCCGAGGTTGGAGGTGGAAGGG GAATGGTGGAAGGGGAGGACGAGGGAGGGGAAGGAGGGTTGGTTCCCGAAGAAGTGGGTTGAGGTTTTGGAGAGG AAGAAGTTGGATGAGCAGGTGCCTGGTAAGAAACTTGATTAG |
| Transcript | >Agabi119p4|737200 ATGGTCTCTCCGCCAAAACCTTGGGAACGCAACGGCGCTGCTGTCGGCCTCTCTTCCTCATCGCCTGCAACAGCG ACGACGACAACTGCTGCCCCGCCTTCAGTACCGCCCCCACCCACATCCACTCAATCTCCCCTTCCATCCACCTCT ACCCCCGCATCCTCAAATCCAAGCGTTCCAGACCGTCCTGCCTCTTTCACTTCACCCACAAACACCATGGCGAAT CCAATGTCTTCTTACTCTTCCTACGGCACATCGCCGTACTCGCGGCTTGGTGGCACTTACGGAGGTCTCGGATCG TATAACAGTTATGGTGGTGGCTATGGTGGATATGGTGGTATGGGCAGTTATGGTGGTATGGGGTATGGTGGTGGT ATGGGATATGGTATGGGCGGCATGGGCGGCATGGGCTATGGTATGGGTCCTATGGGCGGCGCTATGGGTCCTGGC GGTGTCGGACTTGACCCTTATGGAAACCCTATCCCCACTCTTACTCAAACTCTCGAGTCTACCACTCAACATACC TTCACTCTCCTCCATTCTATCGTCCAAACTTTCTCTGGCGTTGCTCAGATGCTGGAAAGCACTTTTATGGCGACG CATTCATCGTTTTTCGCTATGGTTGGGGTTATCGATCAGTTTAGTCAGTTGAGGAATGCTCTTGGGAGTGTTTTA GGGTTGTTTGGGCTTTTGAGGTGGATGAAGGATACGGTCACGGGGAGGGATTCGACGATGCGGCATGAATTCTCA GATTTCGTGCAGGGGAAATCGATAGGCCCACCAAATGCTCCGAATCAACCTAAACCAAGCAAAAAACCCTTGATT ATCTTCCTCATCGCTATCCTTGGTATACCCTACGCCATGACAAAACTTGTCAGAATTCTACAAGAACGAGCTCGC GCTCAACAACAAAACCCTCAAGGCGCACCACTCCTTCCTGGACAGCAACAACACCCTTTACCCCCTCTTGATCCC TCTCAACTCACATTTGCAAGAACATTATATCCCTTCCAACCCAGTAATCCAAACGAATTAGGATTGAAGGAAAAT GAAATTGTAGCGGTTATGGGGAAATTGGATTCGAGAACGGGGATGGAGGTGGATCCGAGGTTGGAGGTGGAAGGG GAATGGTGGAAGGGGAGGACGAGGGAGGGGAAGGAGGGTTGGTTCCCGAAGAAGTGGGTTGAGGTTTTGGAGAGG AAGAAGTTGGATGAGCAGGTGCCTGGTAAGAAACTTGATTAG |
| Gene | >Agabi119p4|737200 ATGGTCTCTCCGCCAAAACCTTGGGAACGCAACGGCGCTGCTGTCGGCCTCTCTTCCTCATCGCCTGCAACAGCG ACGACGACAACTGCTGCCCCGCCTTCAGTACCGCCCCCACCCACATCCACTCAATCTCCCCTTCCATCCACCTCT ACCCCCGCATCCTCAAATCCAAGCGTTCCAGACCGTCCTGCCTCTTTCACTTCACCCACAAACACCATGGCGAAT CCAATGTCTTCTTACTCTTCCTACGGCACATCGCCGTACTCGCGGCTTGGTGGCACTTACGGAGGTCTCGGATCG TATAACAGTTATGGTGGTGGCTATGGTGGATATGGTGGTATGGGCAGTTATGGTGGTATGGGGTATGGTGGTGGT ATGGGATATGGTATGGGCGGCATGGGCGGCATGGGCTATGGTATGGGTCCTATGGGCGGCGCTATGGGTCCTGGC GGTGTCGGACTTGACCCTTATGGAAACCCTATCCCCACTCTTACTCAAACTCTCGAGTCTACCACTCAACATACC TTCACTCTCCTCCATTCTATCGTCCAAACTTTCTCTGGCGTTGCTCAGATGCTGGAAAGCACTTTTATGGCGACG CATTCATCGTTTTTCGCTATGGTTGGGGTTATCGATCAGTTTAGTCAGTTGAGGAATGCTCTTGGGAGTGTTTTA GGGTTGTTTGGGCTTTTGAGGTGGATGAAGGATACGGTCACGGGGAGGGATTCGACGATGCGGCATGAATTCTCA GATTTCGTGCAGGGGAAATCGATAGGCCCACCAAATGCTCCGAATCAACCTAAACCAAGCAAAAAACCCTTGATT ATCTTCCTCATCGCTATCCTTGGTATACCCTACGCCATGACAAAACTTGTCAGAATTCTACAAGAACGAGCTCGC GCTCAACAACAAAACCCTCAAGGCGCACCACTCCTTCCTGGACAGCAACAACACCCTTTACCCCCTCTTGATCCC TCTCAACTCACATTTGCAAGAACATTATATCCCTTCCAACCCAGTAATCCAAACGAATTAGGATTGAAGGAAAAT GAAATTGTAGCGGTTATGGGGAAATTGGATTCGAGAACGGGGATGGAGGTGGATCCGAGGTTGGAGGTGGAAGGG GAATGGTGGAAGGGGAGGACGAGGGAGGGGAAGGAGGGTTGGTTCCCGAAGAAGTGGGTTGAGGTTTTGGAGAGG AAGAAGTTGGATGAGCAGGTGCCTGGTAAGAAACTTGATTAG |