© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|736250 |
| Gene name | |
| Location | scaffold_10:972747..973372 |
| Strand | + |
| Gene length (bp) | 625 |
| Transcript length (bp) | 360 |
| Coding sequence length (bp) | 360 |
| Protein length (aa) | 120 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 1.1E-08 | 7 | 46 |
| PF05834 | Lycopene_cycl | Lycopene cyclase protein | 3.3E-06 | 8 | 43 |
| PF00890 | FAD_binding_2 | FAD binding domain | 6.0E-06 | 8 | 50 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.9E-05 | 11 | 45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9L4K0|BETA2_CHRSD | Oxygen-dependent choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1 | 1 | 40 | 3.0E-08 |
| sp|Q6FDF9|BETA_ACIAD | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=betA PE=3 SV=1 | 2 | 40 | 1.0E-07 |
| sp|Q02DZ0|BETA_PSEAB | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betA PE=3 SV=1 | 4 | 40 | 1.0E-07 |
| sp|A6VEI3|BETA_PSEA7 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betA PE=3 SV=1 | 4 | 40 | 1.0E-07 |
| sp|Q9HTJ2|BETA_PSEAE | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1 | 4 | 40 | 1.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9L4K0|BETA2_CHRSD | Oxygen-dependent choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1 | 1 | 40 | 3.0E-08 |
| sp|Q6FDF9|BETA_ACIAD | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=betA PE=3 SV=1 | 2 | 40 | 1.0E-07 |
| sp|Q02DZ0|BETA_PSEAB | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betA PE=3 SV=1 | 4 | 40 | 1.0E-07 |
| sp|A6VEI3|BETA_PSEA7 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betA PE=3 SV=1 | 4 | 40 | 1.0E-07 |
| sp|Q9HTJ2|BETA_PSEAE | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1 | 4 | 40 | 1.0E-07 |
| sp|B7V5R3|BETA_PSEA8 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=betA PE=3 SV=1 | 4 | 40 | 1.0E-07 |
| sp|B2JS89|BETA_BURP8 | Oxygen-dependent choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betA PE=3 SV=1 | 2 | 40 | 2.0E-07 |
| sp|A4XPI5|BETA_PSEMY | Oxygen-dependent choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA PE=3 SV=1 | 6 | 40 | 2.0E-07 |
| sp|Q6D6D9|BETA_PECAS | Oxygen-dependent choline dehydrogenase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1 | 6 | 40 | 2.0E-07 |
| sp|B2HV79|BETA_ACIBC | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-07 |
| sp|B2TCJ8|BETA_BURPP | Oxygen-dependent choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betA PE=3 SV=1 | 2 | 40 | 3.0E-07 |
| sp|B2FQ89|BETA_STRMK | Oxygen-dependent choline dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betA PE=3 SV=1 | 1 | 40 | 3.0E-07 |
| sp|B7GYG5|BETA_ACIB3 | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-07 |
| sp|B7I895|BETA_ACIB5 | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-07 |
| sp|B0VST3|BETA_ACIBS | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-07 |
| sp|B0V945|BETA_ACIBY | Oxygen-dependent choline dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-07 |
| sp|B4SHV9|BETA_STRM5 | Oxygen-dependent choline dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betA PE=3 SV=1 | 1 | 40 | 4.0E-07 |
| sp|A8GBX9|BETA_SERP5 | Oxygen-dependent choline dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betA PE=3 SV=1 | 6 | 40 | 4.0E-07 |
| sp|V5NC32|PDH1_AGAXA | Pyranose dehydrogenase OS=Agaricus xanthodermus GN=pdh1 PE=1 SV=1 | 3 | 74 | 5.0E-07 |
| sp|Q2T6D0|BETA_BURTA | Oxygen-dependent choline dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1 | 2 | 40 | 6.0E-07 |
| sp|B2K8U4|BETA_YERPB | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betA PE=3 SV=1 | 6 | 40 | 6.0E-07 |
| sp|Q66D54|BETA_YERPS | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=betA PE=3 SV=1 | 6 | 40 | 6.0E-07 |
| sp|Q1QXE1|BETA1_CHRSD | Oxygen-dependent choline dehydrogenase 1 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA1 PE=3 SV=1 | 1 | 40 | 6.0E-07 |
| sp|C6DKY4|BETA_PECCP | Oxygen-dependent choline dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betA PE=3 SV=1 | 6 | 40 | 6.0E-07 |
| sp|B1JSR0|BETA_YERPY | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=betA PE=3 SV=1 | 6 | 40 | 7.0E-07 |
| sp|A7FKL6|BETA_YERP3 | Oxygen-dependent choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betA PE=3 SV=1 | 6 | 40 | 7.0E-07 |
| sp|A4TNP2|BETA_YERPP | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=betA PE=3 SV=1 | 6 | 40 | 7.0E-07 |
| sp|Q1CFR7|BETA_YERPN | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=betA PE=3 SV=1 | 6 | 40 | 7.0E-07 |
| sp|Q8ZGW0|BETA_YERPE | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1 | 6 | 40 | 7.0E-07 |
| sp|Q1C932|BETA_YERPA | Oxygen-dependent choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betA PE=3 SV=1 | 6 | 40 | 7.0E-07 |
| sp|A7MFA8|BETA_CROS8 | Oxygen-dependent choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-07 |
| sp|Q47944|SDH_GLUOY | L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1 | 4 | 39 | 1.0E-06 |
| sp|Q13NG7|BETA_BURXL | Oxygen-dependent choline dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betA PE=3 SV=1 | 2 | 40 | 1.0E-06 |
| sp|Q8CMY2|BETA_STAES | Oxygen-dependent choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=betA PE=3 SV=1 | 7 | 39 | 2.0E-06 |
| sp|Q5HL11|BETA_STAEQ | Oxygen-dependent choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=betA PE=3 SV=1 | 7 | 39 | 2.0E-06 |
| sp|Q88AE7|BETA_PSESM | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=betA PE=3 SV=1 | 1 | 40 | 3.0E-06 |
| sp|B0RNU9|BETA_XANCB | Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-06 |
| sp|Q4L9D7|BETA_STAHJ | Oxygen-dependent choline dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=betA PE=3 SV=1 | 1 | 39 | 3.0E-06 |
| sp|Q48CM7|BETA_PSE14 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=betA PE=3 SV=1 | 1 | 40 | 3.0E-06 |
| sp|Q4UYN5|BETA_XANC8 | Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-06 |
| sp|Q8P5D7|BETA_XANCP | Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) GN=betA PE=3 SV=1 | 6 | 40 | 3.0E-06 |
| sp|Q4ZM63|BETA_PSEU2 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betA PE=3 SV=1 | 1 | 40 | 3.0E-06 |
| sp|B1K707|BETA_BURCC | Oxygen-dependent choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betA PE=3 SV=1 | 2 | 40 | 4.0E-06 |
| sp|A0B2F7|BETA_BURCH | Oxygen-dependent choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betA PE=3 SV=1 | 2 | 40 | 4.0E-06 |
| sp|Q1BQE2|BETA_BURCA | Oxygen-dependent choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betA PE=3 SV=1 | 2 | 40 | 4.0E-06 |
| sp|Q39A44|BETA_BURL3 | Oxygen-dependent choline dehydrogenase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 / 383) GN=betA PE=3 SV=1 | 2 | 40 | 4.0E-06 |
| sp|Q0R4L2|PDH3_LEUMG | Pyranose dehydrogenase 3 OS=Leucoagaricus meleagris GN=pdh3 PE=2 SV=1 | 6 | 52 | 4.0E-06 |
| sp|B4EHJ2|BETA_BURCJ | Oxygen-dependent choline dehydrogenase OS=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) GN=betA PE=3 SV=1 | 2 | 40 | 4.0E-06 |
| sp|P18172|DHGL_DROPS | Glucose dehydrogenase [FAD, quinone] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 | 6 | 41 | 4.0E-06 |
| sp|P18173|DHGL_DROME | Glucose dehydrogenase [FAD, quinone] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 | 6 | 41 | 4.0E-06 |
| sp|Q3L243|PDH2_LEUMG | Pyranose dehydrogenase 2 OS=Leucoagaricus meleagris GN=pdh2 PE=2 SV=1 | 6 | 52 | 5.0E-06 |
| sp|Q63KK7|BETA_BURPS | Oxygen-dependent choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243) GN=betA PE=3 SV=1 | 2 | 40 | 5.0E-06 |
| sp|Q3JLL7|BETA_BURP1 | Oxygen-dependent choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=betA PE=3 SV=1 | 2 | 40 | 5.0E-06 |
| sp|Q8PPG8|BETA_XANAC | Oxygen-dependent choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=betA PE=3 SV=1 | 6 | 40 | 6.0E-06 |
| sp|A9AMZ9|BETA_BURM1 | Oxygen-dependent choline dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betA PE=3 SV=1 | 2 | 40 | 6.0E-06 |
| sp|Q3BXK8|BETA_XANC5 | Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betA PE=3 SV=1 | 6 | 40 | 6.0E-06 |
| sp|Q12062|AFLK_ASPPA | Versicolorin B synthase OS=Aspergillus parasiticus GN=vbs PE=1 SV=1 | 7 | 40 | 7.0E-06 |
| sp|Q8X6C6|BETA_ECO57 | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|Q3L1D1|PDH1_AGABI | Pyranose dehydrogenase OS=Agaricus bisporus GN=pdh1 PE=1 SV=1 | 6 | 52 | 8.0E-06 |
| sp|Q0T7N0|BETA_SHIF8 | Oxygen-dependent choline dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|B1XE52|BETA_ECODH | Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|B1J0W6|BETA_ECOLC | Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|P17444|BETA_ECOLI | Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1 SV=1 | 6 | 40 | 8.0E-06 |
| sp|Q1IG70|BETA_PSEE4 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betA PE=3 SV=1 | 4 | 40 | 8.0E-06 |
| sp|B5Z1R0|BETA_ECO5E | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|A7ZI50|BETA_ECO24 | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|B7L439|BETA_ECO55 | Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|B7M2V5|BETA_ECO8A | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|A7ZWV4|BETA_ECOHS | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|B6I074|BETA_ECOSE | Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA PE=3 SV=1 | 6 | 40 | 8.0E-06 |
| sp|A8AJN0|BETA_CITK8 | Oxygen-dependent choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1 | 6 | 40 | 9.0E-06 |
| sp|B4EX94|BETA_PROMH | Oxygen-dependent choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA PE=3 SV=1 | 7 | 40 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|736250 MVATTEFDYVIIGGGTAGLVVAARLTELKDISVCVLEAGGDITSTSYASVPGDCTPEALRGEGDTDIQRESIRGI KHDQLDAVEPVSYLYTFSCHSLIQYSHPKMLPLVNMMLWRGLET* |
| Coding | >Agabi119p4|736250 ATGGTTGCCACCACTGAATTTGACTACGTGATTATTGGCGGTGGAACCGCCGGCCTCGTCGTTGCTGCTAGACTC ACAGAACTGAAGGACATCAGTGTCTGTGTCCTCGAGGCAGGTGGAGACATCACAAGCACCTCCTATGCCTCGGTT CCAGGGGATTGTACCCCAGAAGCACTCCGAGGGGAGGGTGATACCGATATCCAGAGGGAAAGCATTAGGGGGATC AAGCATGATCAACTTGATGCAGTTGAACCGGTAAGCTACCTTTACACCTTTAGCTGCCATTCTCTGATTCAATAT TCTCATCCGAAAATGCTACCGCTCGTGAATATGATGCTTTGGAGAGGATTGGAAACGTAG |
| Transcript | >Agabi119p4|736250 ATGGTTGCCACCACTGAATTTGACTACGTGATTATTGGCGGTGGAACCGCCGGCCTCGTCGTTGCTGCTAGACTC ACAGAACTGAAGGACATCAGTGTCTGTGTCCTCGAGGCAGGTGGAGACATCACAAGCACCTCCTATGCCTCGGTT CCAGGGGATTGTACCCCAGAAGCACTCCGAGGGGAGGGTGATACCGATATCCAGAGGGAAAGCATTAGGGGGATC AAGCATGATCAACTTGATGCAGTTGAACCGGTAAGCTACCTTTACACCTTTAGCTGCCATTCTCTGATTCAATAT TCTCATCCGAAAATGCTACCGCTCGTGAATATGATGCTTTGGAGAGGATTGGAAACGTAG |
| Gene | >Agabi119p4|736250 ATGGTTGCCACCACTGAATTTGACTACGTGATTATTGGCGGTGGAACCGCCGGCCTCGTCGTTGCTGCTAGACTC ACAGAACTGAAGGACATCAGTGTCTGTGTCCTCGAGGCAGGTGGAGACATCACAAGCACCTCCTATGCCTCGGTT CCAGGTCAGTTGATTTCAACCTCCCACTTTTAGCCGCTTTGCAACTTGCTTGGAAAAAGGGGATGTGAAAAACCT CTGGTTTAACAAGGAGACCGATTGAAGTTTCCTCAGTGTACCCCAGAAGCACTCCGAGGGGAGGGTGATACCGAT ATCCAGGTTCGTAAGAGAAGACCTACTATCGGCTGGTCTCTGAAAACATAATTCTAGAGGGAAAGCATTAGGGGG ATCAAGCATGGCAAGTATCATGTTCTCACATTTCCCGCAGACAGTCTCATGTACTATTTCCGACTAGATCAACTT GATGCAGTTGAACCGGTAAGCTACCTTTACACCTTTAGCTGCCATTCTCTGATTCAATATTCTCATCCGAAAATG CTACCGCTCGTGAATATGATGGTTCGTCATCACCTTGTTTCTTCAAAGAGTACGGCTCGATAGTGCCTCTGTCTA GCTTTGGAGAGGATTGGAAACGTAG |