Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|724500
Gene name
Locationscaffold_09:1775922..1776774
Strand+
Gene length (bp)852
Transcript length (bp)852
Coding sequence length (bp)852
Protein length (aa) 284

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17917 RT_RNaseH RNase H-like domain found in reverse transcriptase 1.1E-20 1 68
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.1E-19 182 240

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P0CT37|TF24_SCHPO Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 1 283 1.0E-45
sp|P0CT35|TF22_SCHPO Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 1 283 1.0E-45
sp|P0CT34|TF21_SCHPO Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 1 283 1.0E-45
sp|P0CT43|TF28_SCHPO Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 1 283 1.0E-45
sp|P0CT42|TF27_SCHPO Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 1 283 1.0E-45
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Swissprot ID Swissprot Description Start End E-value
sp|P0CT37|TF24_SCHPO Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 1 283 1.0E-45
sp|P0CT35|TF22_SCHPO Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 1 283 1.0E-45
sp|P0CT34|TF21_SCHPO Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 1 283 1.0E-45
sp|P0CT43|TF28_SCHPO Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 1 283 1.0E-45
sp|P0CT42|TF27_SCHPO Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 1 283 1.0E-45
sp|P0CT39|TF26_SCHPO Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 1 283 1.0E-45
sp|P0CT38|TF25_SCHPO Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 1 283 1.0E-45
sp|P0CT36|TF23_SCHPO Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 1 283 1.0E-45
sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 1 283 1.0E-45
sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 1 283 1.0E-45
sp|P0CT40|TF29_SCHPO Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 1 283 1.0E-45
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 1 283 2.0E-23
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 1 283 2.0E-23
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1 1 266 1.0E-12
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1 1 266 4.0E-11
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1 1 88 2.0E-09
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 163 283 2.0E-08
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 163 283 6.0E-08
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 172 283 1.0E-07
sp|Q87040|POL_SFVCP Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 172 283 2.0E-07
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1 1 274 3.0E-07
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 186 283 5.0E-07
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 182 283 4.0E-06
sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 170 266 4.0E-06
sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 170 266 4.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|724500
MTETERNYDIHDREMLGIMRCLEEWRHFLEGAKHIFKIWTDHRNLEYFAKAQQLNRRQARWALYLSRFNFELKFC
PGKTMGKADALSRRPDFEQGTKDDNKDQTLLKPEYFAIRAMEEGHMLINAEEEEILDEIRKSEAKEDDVVKAVEE
MKRAKVRSLKGDEWKLEEGLVLKEGKVYVPKDETLRTKIIRLHHDTPIAGHGGQWKTVEMVTRNYWWPGVTKQVQ
KYVEGCDQCQWNKNRPTPPAGKLMPNPIPTKPWANVSVDFIVKLPESQGMDSILVVCD*
Coding >Agabi119p4|724500
ATGACGGAGACAGAACGAAATTATGATATTCACGATAGAGAGATGTTGGGAATAATGCGATGTTTAGAGGAATGG
AGGCACTTCCTGGAAGGGGCAAAACATATATTCAAAATTTGGACGGATCATCGCAATCTAGAATACTTCGCGAAA
GCCCAACAATTAAACCGACGACAAGCCAGATGGGCTTTGTATCTATCTAGATTCAATTTCGAATTAAAATTTTGT
CCAGGAAAGACGATGGGGAAGGCAGACGCATTGAGCAGAAGACCTGATTTCGAACAAGGGACAAAGGACGATAAC
AAGGATCAAACCTTGTTGAAACCAGAATATTTCGCAATTCGAGCAATGGAAGAAGGTCATATGTTAATCAATGCG
GAGGAAGAAGAGATATTAGATGAAATCCGAAAATCAGAAGCAAAAGAAGACGACGTAGTAAAAGCGGTGGAAGAG
ATGAAGCGAGCAAAGGTGAGATCGTTGAAAGGAGACGAGTGGAAACTGGAAGAAGGACTAGTGTTGAAGGAAGGG
AAAGTCTATGTGCCAAAAGACGAGACACTGAGGACGAAAATCATTCGACTACATCACGATACTCCCATTGCTGGA
CATGGAGGACAATGGAAGACAGTTGAAATGGTAACACGCAACTACTGGTGGCCAGGTGTCACTAAGCAAGTCCAG
AAATACGTAGAAGGATGCGACCAATGTCAATGGAATAAAAATCGACCGACACCACCGGCAGGTAAACTAATGCCA
AACCCTATCCCTACAAAACCATGGGCCAACGTATCTGTTGACTTCATAGTAAAGCTGCCAGAATCTCAGGGAATG
GATTCAATCTTAGTGGTGTGCGATTGA
Transcript >Agabi119p4|724500
ATGACGGAGACAGAACGAAATTATGATATTCACGATAGAGAGATGTTGGGAATAATGCGATGTTTAGAGGAATGG
AGGCACTTCCTGGAAGGGGCAAAACATATATTCAAAATTTGGACGGATCATCGCAATCTAGAATACTTCGCGAAA
GCCCAACAATTAAACCGACGACAAGCCAGATGGGCTTTGTATCTATCTAGATTCAATTTCGAATTAAAATTTTGT
CCAGGAAAGACGATGGGGAAGGCAGACGCATTGAGCAGAAGACCTGATTTCGAACAAGGGACAAAGGACGATAAC
AAGGATCAAACCTTGTTGAAACCAGAATATTTCGCAATTCGAGCAATGGAAGAAGGTCATATGTTAATCAATGCG
GAGGAAGAAGAGATATTAGATGAAATCCGAAAATCAGAAGCAAAAGAAGACGACGTAGTAAAAGCGGTGGAAGAG
ATGAAGCGAGCAAAGGTGAGATCGTTGAAAGGAGACGAGTGGAAACTGGAAGAAGGACTAGTGTTGAAGGAAGGG
AAAGTCTATGTGCCAAAAGACGAGACACTGAGGACGAAAATCATTCGACTACATCACGATACTCCCATTGCTGGA
CATGGAGGACAATGGAAGACAGTTGAAATGGTAACACGCAACTACTGGTGGCCAGGTGTCACTAAGCAAGTCCAG
AAATACGTAGAAGGATGCGACCAATGTCAATGGAATAAAAATCGACCGACACCACCGGCAGGTAAACTAATGCCA
AACCCTATCCCTACAAAACCATGGGCCAACGTATCTGTTGACTTCATAGTAAAGCTGCCAGAATCTCAGGGAATG
GATTCAATCTTAGTGGTGTGCGATTGA
Gene >Agabi119p4|724500
ATGACGGAGACAGAACGAAATTATGATATTCACGATAGAGAGATGTTGGGAATAATGCGATGTTTAGAGGAATGG
AGGCACTTCCTGGAAGGGGCAAAACATATATTCAAAATTTGGACGGATCATCGCAATCTAGAATACTTCGCGAAA
GCCCAACAATTAAACCGACGACAAGCCAGATGGGCTTTGTATCTATCTAGATTCAATTTCGAATTAAAATTTTGT
CCAGGAAAGACGATGGGGAAGGCAGACGCATTGAGCAGAAGACCTGATTTCGAACAAGGGACAAAGGACGATAAC
AAGGATCAAACCTTGTTGAAACCAGAATATTTCGCAATTCGAGCAATGGAAGAAGGTCATATGTTAATCAATGCG
GAGGAAGAAGAGATATTAGATGAAATCCGAAAATCAGAAGCAAAAGAAGACGACGTAGTAAAAGCGGTGGAAGAG
ATGAAGCGAGCAAAGGTGAGATCGTTGAAAGGAGACGAGTGGAAACTGGAAGAAGGACTAGTGTTGAAGGAAGGG
AAAGTCTATGTGCCAAAAGACGAGACACTGAGGACGAAAATCATTCGACTACATCACGATACTCCCATTGCTGGA
CATGGAGGACAATGGAAGACAGTTGAAATGGTAACACGCAACTACTGGTGGCCAGGTGTCACTAAGCAAGTCCAG
AAATACGTAGAAGGATGCGACCAATGTCAATGGAATAAAAATCGACCGACACCACCGGCAGGTAAACTAATGCCA
AACCCTATCCCTACAAAACCATGGGCCAACGTATCTGTTGACTTCATAGTAAAGCTGCCAGAATCTCAGGGAATG
GATTCAATCTTAGTGGTGTGCGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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