© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|724150 |
| Gene name | |
| Location | scaffold_09:1761556..1762567 |
| Strand | + |
| Gene length (bp) | 1011 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | 3.9E-19 | 80 | 136 |
| PF00665 | rve | Integrase core domain | 1.7E-12 | 154 | 250 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT43|TF28_SCHPO | Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|Q9UR07|TF211_SCHPO | Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 | 47 | 336 | 1.0E-42 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT43|TF28_SCHPO | Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|Q9UR07|TF211_SCHPO | Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 | 47 | 336 | 1.0E-42 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT39|TF26_SCHPO | Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT35|TF22_SCHPO | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT42|TF27_SCHPO | Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|P0CT34|TF21_SCHPO | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 | 47 | 302 | 1.0E-42 |
| sp|Q7LHG5|YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 | 67 | 332 | 5.0E-41 |
| sp|Q99315|YG31B_YEAST | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 | 67 | 332 | 2.0E-40 |
| sp|Q09575|YRD6_CAEEL | Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 | 66 | 307 | 2.0E-28 |
| sp|P23074|POL_SFV1 | Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 | 63 | 333 | 6.0E-28 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 7 | 307 | 1.0E-26 |
| sp|P27401|POL_SFV3L | Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 | 72 | 333 | 3.0E-26 |
| sp|O93209|POL_FFV | Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 | 37 | 331 | 4.0E-26 |
| sp|Q87040|POL_SFVCP | Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 | 71 | 331 | 2.0E-25 |
| sp|P14350|POL_FOAMV | Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 | 71 | 331 | 1.0E-24 |
| sp|Q9TTC1|POL_KORV | Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1 | 38 | 279 | 2.0E-18 |
| sp|A4FUB7|GIN1_BOVIN | Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1 | 87 | 311 | 2.0E-18 |
| sp|Q9NXP7|GIN1_HUMAN | Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 | 61 | 311 | 6.0E-17 |
| sp|Q8K259|GIN1_MOUSE | Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2 | 61 | 310 | 8.0E-17 |
| sp|Q66H30|GIN1_RAT | Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1 | 61 | 310 | 8.0E-17 |
| sp|Q5RBK0|GIN1_PONAB | Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 | 61 | 311 | 1.0E-16 |
| sp|Q4R6I1|GIN1_MACFA | Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1 | 61 | 311 | 2.0E-16 |
| sp|P08361|POL_MLVCB | Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=gag-pol PE=3 SV=1 | 175 | 310 | 4.0E-16 |
| sp|P10272|POL_BAEVM | Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 | 44 | 310 | 9.0E-16 |
| sp|P31792|POL_FENV1 | Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 | 44 | 310 | 1.0E-15 |
| sp|P31795|POL_MLVRK | Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1 | 151 | 335 | 2.0E-15 |
| sp|Q5DTZ0|NYNRI_MOUSE | Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2 | 70 | 302 | 7.0E-15 |
| sp|P03356|POL_MLVAV | Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 | 151 | 335 | 1.0E-14 |
| sp|P11227|POL_MLVRD | Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 | 151 | 310 | 1.0E-14 |
| sp|Q2F7J0|POL_XMRV4 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1 | 151 | 336 | 2.0E-14 |
| sp|P03360|POL_AVIRE | Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1 | 72 | 310 | 2.0E-14 |
| sp|A1Z651|POL_XMRV6 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1 | 151 | 336 | 3.0E-14 |
| sp|Q2F7J3|POL_XMRV3 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1 | 151 | 336 | 4.0E-14 |
| sp|P26810|POL_MLVF5 | Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 | 151 | 310 | 5.0E-14 |
| sp|P26808|POL_MLVFP | Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 | 151 | 310 | 6.0E-14 |
| sp|P03355|POL_MLVMS | Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4 | 151 | 310 | 7.0E-14 |
| sp|P26809|POL_MLVFF | Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 | 151 | 310 | 7.0E-14 |
| sp|P21414|POL_GALV | Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1 | 98 | 310 | 9.0E-14 |
| sp|Q9P2P1|NYNRI_HUMAN | Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3 | 70 | 302 | 3.0E-11 |
| sp|P03359|POL_WMSV | Pol polyprotein (Fragment) OS=Woolly monkey sarcoma virus GN=pol PE=3 SV=1 | 152 | 310 | 6.0E-10 |
| sp|O92815|POL_WDSV | Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1 SV=2 | 68 | 295 | 2.0E-09 |
| sp|P10401|POLY_DROME | Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 97 | 301 | 3.0E-09 |
| sp|Q8I7P9|POL5_DROME | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 97 | 301 | 3.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015074 | DNA integration | Yes |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|724150 MFKEKMFIRRLEESTPIYDVTLLHNRRFEILADETVLEKIRKCERRETRVLEEMKKQPEKVWENKGIIYRQGRIY VPDNQEIRNFILHDHHNSPDAGHPGTYRMLESVKRTFWWPTIKTNIRRYVRGCDMCQKNKTIRQPNHIPLNPLSI PDKPWEEISIDMIGPLPKSKEKDAIIVIVDRFSKMIHLVPTTTSLTSMDLAEIYKEEVWRHHGIPKRIISDRGPQ FASKFMESLCKALGIERNLSTAYHPQTDGQTERMNQEIETYLRAFINYRQDDWTRWLPMAEFHYNDKTHAATGQT PFFLNYGLHPWKGNITVETTNPTATSLIEELENVRE* |
| Coding | >Agabi119p4|724150 ATGTTCAAAGAGAAGATGTTTATCCGAAGGCTTGAAGAATCCACCCCCATCTATGATGTCACCTTACTCCACAAT CGAAGATTCGAGATTTTAGCCGATGAAACCGTACTTGAGAAGATTAGGAAATGTGAAAGACGGGAAACCAGAGTA TTAGAAGAGATGAAGAAGCAACCAGAGAAAGTATGGGAGAACAAAGGAATCATTTACCGACAAGGAAGGATCTAT GTTCCGGATAACCAGGAAATCAGAAATTTCATCCTTCACGATCATCATAATTCCCCCGACGCCGGACATCCTGGA ACATACCGGATGTTAGAATCAGTTAAACGAACCTTTTGGTGGCCTACGATCAAAACAAATATCAGAAGATATGTC AGAGGATGCGACATGTGCCAGAAGAACAAAACGATTCGACAACCCAACCACATCCCACTTAATCCATTATCCATC CCCGACAAACCTTGGGAAGAAATATCTATAGACATGATTGGACCACTACCGAAGTCAAAGGAGAAGGATGCTATT ATTGTTATCGTTGACAGATTTTCCAAAATGATCCACCTCGTTCCCACTACCACGTCACTCACGTCCATGGATCTT GCGGAAATCTATAAGGAAGAAGTCTGGCGACATCACGGAATTCCGAAACGGATTATTAGCGACAGAGGACCACAA TTTGCATCGAAATTTATGGAATCACTATGCAAAGCGCTAGGCATTGAACGAAACCTTTCTACGGCCTACCACCCA CAAACAGACGGTCAAACAGAACGGATGAATCAGGAAATCGAGACCTACCTTCGAGCATTCATCAATTATCGACAA GACGATTGGACGAGATGGCTTCCCATGGCAGAATTCCATTACAACGACAAAACCCACGCTGCCACCGGACAAACC CCATTCTTCTTAAACTACGGACTTCACCCATGGAAGGGTAATATCACGGTTGAAACGACGAACCCCACCGCCACC TCCCTGATTGAAGAATTAGAGAACGTGCGAGAATAA |
| Transcript | >Agabi119p4|724150 ATGTTCAAAGAGAAGATGTTTATCCGAAGGCTTGAAGAATCCACCCCCATCTATGATGTCACCTTACTCCACAAT CGAAGATTCGAGATTTTAGCCGATGAAACCGTACTTGAGAAGATTAGGAAATGTGAAAGACGGGAAACCAGAGTA TTAGAAGAGATGAAGAAGCAACCAGAGAAAGTATGGGAGAACAAAGGAATCATTTACCGACAAGGAAGGATCTAT GTTCCGGATAACCAGGAAATCAGAAATTTCATCCTTCACGATCATCATAATTCCCCCGACGCCGGACATCCTGGA ACATACCGGATGTTAGAATCAGTTAAACGAACCTTTTGGTGGCCTACGATCAAAACAAATATCAGAAGATATGTC AGAGGATGCGACATGTGCCAGAAGAACAAAACGATTCGACAACCCAACCACATCCCACTTAATCCATTATCCATC CCCGACAAACCTTGGGAAGAAATATCTATAGACATGATTGGACCACTACCGAAGTCAAAGGAGAAGGATGCTATT ATTGTTATCGTTGACAGATTTTCCAAAATGATCCACCTCGTTCCCACTACCACGTCACTCACGTCCATGGATCTT GCGGAAATCTATAAGGAAGAAGTCTGGCGACATCACGGAATTCCGAAACGGATTATTAGCGACAGAGGACCACAA TTTGCATCGAAATTTATGGAATCACTATGCAAAGCGCTAGGCATTGAACGAAACCTTTCTACGGCCTACCACCCA CAAACAGACGGTCAAACAGAACGGATGAATCAGGAAATCGAGACCTACCTTCGAGCATTCATCAATTATCGACAA GACGATTGGACGAGATGGCTTCCCATGGCAGAATTCCATTACAACGACAAAACCCACGCTGCCACCGGACAAACC CCATTCTTCTTAAACTACGGACTTCACCCATGGAAGGGTAATATCACGGTTGAAACGACGAACCCCACCGCCACC TCCCTGATTGAAGAATTAGAGAACGTGCGAGAATAA |
| Gene | >Agabi119p4|724150 ATGTTCAAAGAGAAGATGTTTATCCGAAGGCTTGAAGAATCCACCCCCATCTATGATGTCACCTTACTCCACAAT CGAAGATTCGAGATTTTAGCCGATGAAACCGTACTTGAGAAGATTAGGAAATGTGAAAGACGGGAAACCAGAGTA TTAGAAGAGATGAAGAAGCAACCAGAGAAAGTATGGGAGAACAAAGGAATCATTTACCGACAAGGAAGGATCTAT GTTCCGGATAACCAGGAAATCAGAAATTTCATCCTTCACGATCATCATAATTCCCCCGACGCCGGACATCCTGGA ACATACCGGATGTTAGAATCAGTTAAACGAACCTTTTGGTGGCCTACGATCAAAACAAATATCAGAAGATATGTC AGAGGATGCGACATGTGCCAGAAGAACAAAACGATTCGACAACCCAACCACATCCCACTTAATCCATTATCCATC CCCGACAAACCTTGGGAAGAAATATCTATAGACATGATTGGACCACTACCGAAGTCAAAGGAGAAGGATGCTATT ATTGTTATCGTTGACAGATTTTCCAAAATGATCCACCTCGTTCCCACTACCACGTCACTCACGTCCATGGATCTT GCGGAAATCTATAAGGAAGAAGTCTGGCGACATCACGGAATTCCGAAACGGATTATTAGCGACAGAGGACCACAA TTTGCATCGAAATTTATGGAATCACTATGCAAAGCGCTAGGCATTGAACGAAACCTTTCTACGGCCTACCACCCA CAAACAGACGGTCAAACAGAACGGATGAATCAGGAAATCGAGACCTACCTTCGAGCATTCATCAATTATCGACAA GACGATTGGACGAGATGGCTTCCCATGGCAGAATTCCATTACAACGACAAAACCCACGCTGCCACCGGACAAACC CCATTCTTCTTAAACTACGGACTTCACCCATGGAAGGGTAATATCACGGTTGAAACGACGAACCCCACCGCCACC TCCCTGATTGAAGAATTAGAGAACGTGCGAGAATAA |