© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|720800 |
| Gene name | |
| Location | scaffold_09:1468415..1471637 |
| Strand | + |
| Gene length (bp) | 3222 |
| Transcript length (bp) | 3222 |
| Coding sequence length (bp) | 3222 |
| Protein length (aa) | 1074 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17919 | RT_RNaseH_2 | RNase H-like domain found in reverse transcriptase | 1.3E-34 | 423 | 518 |
| PF17917 | RT_RNaseH | RNase H-like domain found in reverse transcriptase | 7.1E-33 | 448 | 554 |
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2.0E-28 | 201 | 360 |
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | 1.3E-19 | 640 | 696 |
| PF00385 | Chromo | Chromo (CHRromatin Organisation MOdifier) domain | 1.5E-15 | 1010 | 1068 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT39|TF26_SCHPO | Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 90 | 983 | 6.0E-150 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT39|TF26_SCHPO | Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 90 | 983 | 5.0E-150 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 90 | 983 | 6.0E-150 |
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 90 | 983 | 6.0E-150 |
| sp|P0CT35|TF22_SCHPO | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 | 90 | 983 | 6.0E-150 |
| sp|P0CT34|TF21_SCHPO | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 | 90 | 983 | 6.0E-150 |
| sp|Q9UR07|TF211_SCHPO | Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 | 90 | 983 | 2.0E-149 |
| sp|P0CT43|TF28_SCHPO | Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 | 90 | 983 | 3.0E-149 |
| sp|P0CT42|TF27_SCHPO | Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 | 90 | 983 | 3.0E-149 |
| sp|Q99315|YG31B_YEAST | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 | 130 | 1069 | 8.0E-129 |
| sp|Q7LHG5|YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 | 130 | 983 | 2.0E-128 |
| sp|P20825|POL2_DROME | Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 134 | 796 | 2.0E-82 |
| sp|P04323|POL3_DROME | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 170 | 574 | 5.0E-73 |
| sp|Q8I7P9|POL5_DROME | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 169 | 576 | 5.0E-68 |
| sp|P10401|POLY_DROME | Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 36 | 933 | 2.0E-61 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 125 | 574 | 1.0E-55 |
| sp|P19199|POL_COYMV | Polyprotein P3 OS=Commelina yellow mottle virus PE=3 SV=2 | 160 | 584 | 3.0E-39 |
| sp|A6NKG5|RTL1_HUMAN | Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3 | 226 | 562 | 4.0E-39 |
| sp|P09523|POL_FMVD | Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1 | 42 | 574 | 3.0E-38 |
| sp|Q00962|POL_CAMVN | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1 | 165 | 574 | 3.0E-36 |
| sp|P03555|POL_CAMVC | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1 | 90 | 574 | 4.0E-36 |
| sp|Q02964|POL_CAMVE | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1 | 165 | 574 | 4.0E-36 |
| sp|P03554|POL_CAMVS | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1 | 165 | 574 | 3.0E-35 |
| sp|P05400|POL_CERV | Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1 | 148 | 572 | 3.0E-35 |
| sp|P03556|POL_CAMVD | Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1 | 165 | 574 | 8.0E-35 |
| sp|Q52QI2|RTL1_BOVIN | Retrotransposon-like protein 1 OS=Bos taurus GN=RTL1 PE=2 SV=2 | 229 | 566 | 3.0E-34 |
| sp|P10272|POL_BAEVM | Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 | 154 | 494 | 9.0E-34 |
| sp|P26809|POL_MLVFF | Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 | 148 | 587 | 2.0E-33 |
| sp|A1Z651|POL_XMRV6 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1 | 148 | 587 | 5.0E-33 |
| sp|Q2F7J0|POL_XMRV4 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1 | 148 | 587 | 5.0E-33 |
| sp|P03355|POL_MLVMS | Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4 | 148 | 579 | 5.0E-33 |
| sp|Q2F7J3|POL_XMRV3 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1 | 148 | 587 | 6.0E-33 |
| sp|Q7M732|RTL1_MOUSE | Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1 | 229 | 575 | 7.0E-33 |
| sp|P26808|POL_MLVFP | Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 | 148 | 587 | 1.0E-32 |
| sp|Q91DM0|POLG_PVCV1 | Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1 | 185 | 574 | 1.0E-32 |
| sp|Q6XKE6|POLG_PVCV2 | Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1 | 185 | 574 | 2.0E-32 |
| sp|P31792|POL_FENV1 | Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 | 154 | 494 | 2.0E-32 |
| sp|P26810|POL_MLVF5 | Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 | 148 | 587 | 2.0E-32 |
| sp|Q7TD08|POL_CYLCV | Enzymatic polyprotein OS=Cestrum yellow leaf curling virus GN=ORF V PE=3 SV=1 | 157 | 574 | 7.0E-32 |
| sp|P03356|POL_MLVAV | Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 | 148 | 587 | 7.0E-32 |
| sp|Q89703|POL_CSVMV | Putative enzymatic polyprotein OS=Cassava vein mosaic virus GN=ORF 3 PE=3 SV=1 | 171 | 582 | 2.0E-31 |
| sp|P11227|POL_MLVRD | Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 | 148 | 587 | 2.0E-30 |
| sp|P21414|POL_GALV | Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1 | 148 | 510 | 5.0E-30 |
| sp|Q9TTC1|POL_KORV | Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1 | 148 | 510 | 6.0E-29 |
| sp|O92815|POL_WDSV | Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1 SV=2 | 162 | 555 | 3.0E-26 |
| sp|P27502|POL_RTBVP | Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) PE=1 SV=1 | 165 | 585 | 4.0E-26 |
| sp|P15629|POL_SOCMV | Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2 | 148 | 574 | 1.0E-24 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 643 | 955 | 1.0E-21 |
| sp|Q87040|POL_SFVCP | Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 | 631 | 929 | 1.0E-21 |
| sp|P92523|M860_ARATH | Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1 | 330 | 453 | 2.0E-21 |
| sp|P27401|POL_SFV3L | Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 | 632 | 929 | 4.0E-21 |
| sp|P14350|POL_FOAMV | Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 | 558 | 919 | 4.0E-21 |
| sp|P23074|POL_SFV1 | Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 | 632 | 929 | 6.0E-21 |
| sp|O93209|POL_FFV | Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 | 123 | 508 | 1.0E-20 |
| sp|O93209|POL_FFV | Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 | 650 | 900 | 3.0E-20 |
| sp|P14350|POL_FOAMV | Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 | 131 | 562 | 4.0E-20 |
| sp|P31843|RRPO_OENBE | RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1 | 206 | 303 | 4.0E-20 |
| sp|Q87040|POL_SFVCP | Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 | 131 | 562 | 4.0E-19 |
| sp|P23074|POL_SFV1 | Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 | 141 | 552 | 5.0E-19 |
| sp|P03355|POL_MLVMS | Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4 | 558 | 975 | 2.0E-18 |
| sp|P03356|POL_MLVAV | Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 | 566 | 988 | 7.0E-17 |
| sp|P26808|POL_MLVFP | Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 | 558 | 975 | 2.0E-16 |
| sp|P11227|POL_MLVRD | Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 | 566 | 987 | 2.0E-16 |
| sp|Q9NXP7|GIN1_HUMAN | Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 | 631 | 873 | 2.0E-16 |
| sp|P31795|POL_MLVRK | Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1 | 566 | 987 | 3.0E-16 |
| sp|Q09575|YRD6_CAEEL | Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 | 193 | 408 | 3.0E-16 |
| sp|P26810|POL_MLVF5 | Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 | 558 | 975 | 4.0E-16 |
| sp|Q5RBK0|GIN1_PONAB | Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 | 631 | 873 | 4.0E-16 |
| sp|P26809|POL_MLVFF | Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 | 558 | 975 | 6.0E-16 |
| sp|P27401|POL_SFV3L | Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 | 141 | 415 | 1.0E-15 |
| sp|A1Z651|POL_XMRV6 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1 | 621 | 985 | 2.0E-15 |
| sp|Q2F7J0|POL_XMRV4 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1 | 621 | 985 | 2.0E-15 |
| sp|Q2F7J3|POL_XMRV3 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1 | 621 | 985 | 2.0E-15 |
| sp|Q4R6I1|GIN1_MACFA | Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1 | 631 | 873 | 2.0E-15 |
| sp|P03365|POL_MMTVB | Pol polyprotein OS=Mouse mammary tumor virus (strain BR6) GN=pol PE=3 SV=2 | 170 | 470 | 2.0E-14 |
| sp|Q8K259|GIN1_MOUSE | Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2 | 631 | 873 | 7.0E-14 |
| sp|P11283|POL_MMTVC | Gag-Pro-Pol polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag-pro-pol PE=1 SV=2 | 170 | 470 | 2.0E-13 |
| sp|Q66H30|GIN1_RAT | Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1 | 631 | 873 | 2.0E-13 |
| sp|A4FUB7|GIN1_BOVIN | Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1 | 647 | 873 | 8.0E-13 |
| sp|P11368|POL_IPMA | Putative Pol polyprotein OS=Mouse intracisternal a-particle MIA14 GN=pol PE=3 SV=1 | 156 | 491 | 1.0E-12 |
| sp|P03360|POL_AVIRE | Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1 | 632 | 893 | 2.0E-12 |
| sp|P08361|POL_MLVCB | Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=gag-pol PE=3 SV=1 | 733 | 985 | 4.0E-12 |
| sp|Q09575|YRD6_CAEEL | Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 | 633 | 822 | 5.0E-12 |
| sp|Q4U0X6|POL_HTL3P | Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain Pyl43) GN=gag-pro-pol PE=3 SV=4 | 156 | 365 | 1.0E-10 |
| sp|P31792|POL_FENV1 | Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 | 600 | 975 | 2.0E-10 |
| sp|P10272|POL_BAEVM | Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 | 631 | 981 | 4.0E-10 |
| sp|Q5DTZ0|NYNRI_MOUSE | Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2 | 642 | 966 | 4.0E-10 |
| sp|Q9P2P1|NYNRI_HUMAN | Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3 | 380 | 493 | 1.0E-09 |
| sp|P03362|POL_HTL1A | Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A) GN=gag-pro-pol PE=1 SV=3 | 155 | 414 | 4.0E-09 |
| sp|P51517|POL_SRV2 | Pol polyprotein OS=Simian retrovirus SRV-2 GN=pol PE=3 SV=1 | 166 | 427 | 1.0E-08 |
| sp|P14078|POL_HTL1C | Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3 | 155 | 414 | 1.0E-08 |
| sp|P31623|POL_JSRV | Pol polyprotein OS=Sheep pulmonary adenomatosis virus GN=pol PE=3 SV=1 | 166 | 437 | 1.0E-08 |
| sp|P07572|POL_MPMV | Pol polyprotein OS=Mason-Pfizer monkey virus GN=pol PE=3 SV=1 | 174 | 357 | 1.0E-08 |
| sp|Q5DTZ0|NYNRI_MOUSE | Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2 | 380 | 491 | 2.0E-08 |
| sp|Q9P2P1|NYNRI_HUMAN | Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3 | 635 | 983 | 2.0E-08 |
| sp|P0C211|POL_HTL1L | Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate Melanesia mel5 subtype C) GN=gag-pro-pol PE=3 SV=2 | 155 | 414 | 2.0E-08 |
| sp|Q0R5R2|POL_HTL32 | Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain 2026ND) GN=gag-pro-pol PE=3 SV=3 | 156 | 365 | 2.0E-08 |
| sp|P04025|POL_SRV1 | Pol polyprotein OS=Simian retrovirus SRV-1 GN=pol PE=3 SV=1 | 164 | 432 | 3.0E-07 |
| sp|Q82851|POL_JEMBR | Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1 | 158 | 394 | 4.0E-07 |
| sp|P63135|POK7_HUMAN | Endogenous retrovirus group K member 7 Pol protein OS=Homo sapiens GN=ERVK-7 PE=3 SV=1 | 160 | 470 | 2.0E-06 |
| sp|Q9WC63|POL_HV1S9 | Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3 | 162 | 421 | 2.0E-06 |
| sp|Q9UQG0|POK11_HUMAN | Endogenous retrovirus group K member 11 Pol protein OS=Homo sapiens GN=ERVK-11 PE=2 SV=2 | 160 | 470 | 2.0E-06 |
| sp|Q9TTC1|POL_KORV | Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1 | 641 | 986 | 3.0E-06 |
| sp|P63136|POK25_HUMAN | Endogenous retrovirus group K member 25 Pol protein OS=Homo sapiens GN=ERVK-25 PE=3 SV=1 | 160 | 470 | 4.0E-06 |
| sp|P12894|POL_IPMAI | Probable Pol polyprotein OS=Mouse intracisternal a-particle IL3 PE=3 SV=1 | 269 | 491 | 7.0E-06 |
| sp|P10266|POK10_HUMAN | Endogenous retrovirus group K member 10 Pol protein OS=Homo sapiens GN=ERVK-10 PE=3 SV=2 | 160 | 470 | 8.0E-06 |
| sp|P63132|PO113_HUMAN | Endogenous retrovirus group K member 113 Pol protein OS=Homo sapiens GN=HERVK_113 PE=3 SV=1 | 160 | 416 | 8.0E-06 |
| sp|Q9WC54|POL_HV1S2 | Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3 | 162 | 421 | 8.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|720800 MNADGSRNASGVCTHYVLLNIEINNKKMLIQASIVSLGNHKLFLGISWLRKFNPAIDWTKQTLKWRDEDDDSTLT LSRGPSSNFINNIFVEINSKSNTSQQLFNQAEKKKTESDPAKAVPKRFHKFLKVFNKVESEKLPPRRPWDHKIEV QTYFKPKRMPVYNLTPIERKELDKFIAENLRKGYIRQSKSPMASSFFFVGKKGGDLRPCQDYRYLNQNTIKNAHP IPNIARIMDKLKDSKWFTKLDVRLGYNNVRIHEGDEWKAAFRTPNGLYEPTVMFFGMTNSPATFQSMMDHIFKQL IENGGVIIYMDDILIHTKTQKQLDELTKQVLQILEQNHLYLKTEKCEFETQRLEYLGVIITPDSIEMDPIKLKGI EDWPVPKTVKNVRQFIGFCNFYRKFIHNYAKIAQPLNSLMRKTKKFEWNPNAQTAFETLKQQFLKRPVLQMVDQT KPFEIECDASAFATGAVLLQRDTNGDKHPVAYYSKSLNPAERNYHVSDQEFLSIIRALKEWRHYVEGSPEPLLIW SDHENLTRWKEPQQLNRRQARWMLYMTRFNYVIKHLPGNKNVLADALSRRPDLTPEGIDNENLIALPSTKFINFL TEELEEKIKDKKDTITPSEQFTREEDIYTYQGRLVIPDDSDIKKELLTRVHDHESAGHPGIAETLRKLTKEVYWP GMNTYVQNYVKGCPICQQYKINRHPLKPPMQPIKGPSVTKPFTQISMDLITDLPPSDGYDAILSIVDHGLTKGII LTPTRKTATADDIAEMLIDKVFSKYGTPQKIISDRDPRFAAKSMQRLYEKLNIKPAFSTAYHPQTDGTTERYNQE IEFYLAVYTSRNPNTWRRALPMIEFVHNTKPHAGRQHSPSELILGYNPKAFINKEESNVPSIEEKTLFLEQAREA AIEAHEQARLKMANRSNRPWNALKVGDRVWLDNRNLPVPYASKKLSQRREGPFRVIRRTSPTTYELELPKRWKIH NKFHASLLTPVVENDIYGKHNPQPPPTLVYGEEEYEVEAILNHRARKRRLGNGRLATRTEYLVRWQGYGPSEDSW ESEEDLANSSEILEEYKNLKKLS* |
| Coding | >Agabi119p4|720800 ATGAATGCCGATGGATCAAGAAATGCATCAGGAGTATGCACACACTATGTCCTACTCAACATCGAAATCAACAAC AAGAAAATGTTGATACAAGCAAGCATAGTATCGCTTGGAAACCACAAACTATTCTTAGGAATATCATGGCTAAGA AAATTCAATCCAGCAATAGATTGGACAAAACAAACTCTAAAATGGAGAGATGAAGATGACGACTCAACTCTTACA CTTTCTAGAGGACCATCAAGCAACTTCATTAACAATATCTTCGTTGAAATCAACTCGAAAAGCAATACTTCACAA CAGCTATTCAATCAAGCTGAAAAGAAGAAAACGGAATCTGATCCTGCTAAAGCAGTACCGAAAAGATTTCACAAG TTTCTCAAAGTATTCAACAAAGTAGAATCAGAGAAATTACCACCAAGACGTCCTTGGGATCACAAAATTGAAGTT CAAACCTACTTCAAACCCAAGAGAATGCCAGTCTACAATCTAACACCTATAGAACGAAAAGAATTAGACAAGTTC ATAGCTGAAAACCTACGAAAGGGATACATCCGACAATCTAAATCACCAATGGCATCATCCTTCTTCTTTGTTGGA AAGAAAGGAGGAGATCTACGCCCATGTCAAGATTATCGCTATCTTAATCAAAACACGATTAAGAATGCTCACCCT ATTCCAAACATTGCTCGAATCATGGATAAACTAAAGGATTCGAAATGGTTTACAAAGCTAGATGTCAGACTAGGC TATAACAATGTCAGAATTCATGAAGGAGATGAATGGAAAGCAGCATTCAGAACACCTAATGGATTATACGAGCCT ACTGTCATGTTCTTTGGAATGACAAACTCGCCAGCCACATTTCAATCAATGATGGATCACATTTTCAAACAATTA ATTGAAAATGGAGGAGTCATTATCTATATGGACGATATCTTAATCCATACAAAAACACAAAAACAACTTGATGAA CTTACCAAACAAGTTCTTCAAATACTCGAACAAAACCATCTCTATCTCAAGACAGAGAAATGCGAATTTGAAACG CAACGTCTAGAATACCTTGGAGTCATTATAACTCCAGATTCTATCGAAATGGATCCAATTAAACTGAAAGGAATT GAAGATTGGCCTGTACCTAAAACGGTCAAGAATGTTCGACAATTCATTGGATTCTGCAACTTCTACAGAAAGTTC ATTCACAATTACGCCAAAATCGCCCAACCTCTCAACTCTCTTATGAGGAAGACAAAGAAATTCGAATGGAATCCA AATGCACAAACAGCATTTGAAACACTTAAACAACAATTCTTAAAACGACCAGTTCTACAAATGGTAGATCAAACC AAACCATTTGAAATAGAATGCGATGCCTCCGCATTTGCCACAGGAGCAGTCTTACTACAACGAGACACCAATGGA GATAAGCATCCGGTTGCTTATTACTCTAAATCCCTTAATCCAGCCGAAAGGAACTATCATGTTTCGGATCAGGAA TTCTTATCAATCATTAGAGCATTAAAAGAATGGAGACACTATGTGGAAGGATCACCTGAACCATTACTAATTTGG TCGGATCACGAGAACCTTACTCGGTGGAAGGAACCCCAACAATTAAACCGAAGACAAGCGAGATGGATGTTATAT ATGACAAGATTCAATTATGTCATCAAACATCTTCCAGGCAATAAGAATGTCTTAGCCGATGCCCTGAGTAGACGT CCAGATCTAACTCCAGAAGGCATAGATAACGAGAACTTAATTGCTCTACCTTCTACGAAGTTTATCAATTTCTTA ACGGAAGAACTAGAAGAGAAGATCAAGGACAAGAAGGACACTATTACACCATCAGAGCAGTTTACTCGAGAAGAA GACATCTATACTTATCAAGGAAGACTTGTGATACCGGATGACTCGGACATCAAGAAGGAACTCTTAACCCGAGTC CATGATCATGAATCAGCTGGACACCCTGGAATAGCCGAAACACTTCGAAAATTAACGAAGGAAGTCTACTGGCCA GGAATGAACACTTATGTCCAGAACTACGTCAAAGGATGCCCCATATGTCAACAATACAAGATCAACAGACATCCA CTAAAACCGCCGATGCAACCGATCAAAGGACCTTCAGTAACGAAGCCATTTACACAAATATCTATGGATCTTATC ACAGATCTACCCCCTAGTGATGGCTATGATGCAATATTGTCCATAGTGGACCATGGACTTACGAAAGGGATAATT CTAACCCCTACTAGGAAAACAGCAACAGCTGATGACATCGCCGAAATGCTAATCGATAAGGTATTCTCTAAATAT GGAACACCTCAGAAGATCATATCAGATCGAGACCCTCGATTCGCAGCCAAATCTATGCAAAGACTCTATGAAAAG CTTAACATCAAGCCCGCATTTTCAACAGCTTATCATCCACAAACTGATGGAACTACAGAACGCTACAATCAAGAA ATAGAATTTTATCTTGCAGTATATACTTCAAGAAACCCAAACACATGGAGACGAGCATTACCTATGATTGAATTC GTTCACAATACTAAACCACATGCAGGAAGACAACACTCGCCTTCAGAACTTATATTAGGATACAATCCTAAAGCA TTCATTAACAAAGAAGAATCAAATGTACCTTCTATCGAAGAGAAGACATTATTCTTAGAACAAGCTAGAGAAGCA GCAATCGAAGCACATGAGCAAGCACGTTTGAAGATGGCTAACCGAAGTAACCGACCCTGGAATGCACTTAAGGTT GGTGATAGAGTTTGGTTAGATAACCGAAACTTGCCCGTGCCGTACGCATCAAAGAAGCTCAGTCAAAGAAGAGAA GGACCCTTCAGAGTAATTAGAAGAACTTCTCCCACAACATACGAGTTAGAACTTCCGAAGCGATGGAAGATACAC AACAAATTCCATGCATCTCTGCTTACACCCGTAGTAGAGAATGACATCTATGGAAAGCATAATCCACAGCCACCT CCGACATTAGTGTATGGAGAAGAGGAGTATGAAGTCGAAGCGATCCTTAATCACAGAGCAAGGAAGAGACGCTTG GGAAATGGAAGACTCGCAACAAGAACAGAATATCTTGTCAGATGGCAAGGATATGGACCGTCAGAGGATTCATGG GAATCGGAAGAAGATCTTGCGAATTCAAGCGAGATACTTGAAGAGTATAAGAACCTGAAGAAACTCAGCTAA |
| Transcript | >Agabi119p4|720800 ATGAATGCCGATGGATCAAGAAATGCATCAGGAGTATGCACACACTATGTCCTACTCAACATCGAAATCAACAAC AAGAAAATGTTGATACAAGCAAGCATAGTATCGCTTGGAAACCACAAACTATTCTTAGGAATATCATGGCTAAGA AAATTCAATCCAGCAATAGATTGGACAAAACAAACTCTAAAATGGAGAGATGAAGATGACGACTCAACTCTTACA CTTTCTAGAGGACCATCAAGCAACTTCATTAACAATATCTTCGTTGAAATCAACTCGAAAAGCAATACTTCACAA CAGCTATTCAATCAAGCTGAAAAGAAGAAAACGGAATCTGATCCTGCTAAAGCAGTACCGAAAAGATTTCACAAG TTTCTCAAAGTATTCAACAAAGTAGAATCAGAGAAATTACCACCAAGACGTCCTTGGGATCACAAAATTGAAGTT CAAACCTACTTCAAACCCAAGAGAATGCCAGTCTACAATCTAACACCTATAGAACGAAAAGAATTAGACAAGTTC ATAGCTGAAAACCTACGAAAGGGATACATCCGACAATCTAAATCACCAATGGCATCATCCTTCTTCTTTGTTGGA AAGAAAGGAGGAGATCTACGCCCATGTCAAGATTATCGCTATCTTAATCAAAACACGATTAAGAATGCTCACCCT ATTCCAAACATTGCTCGAATCATGGATAAACTAAAGGATTCGAAATGGTTTACAAAGCTAGATGTCAGACTAGGC TATAACAATGTCAGAATTCATGAAGGAGATGAATGGAAAGCAGCATTCAGAACACCTAATGGATTATACGAGCCT ACTGTCATGTTCTTTGGAATGACAAACTCGCCAGCCACATTTCAATCAATGATGGATCACATTTTCAAACAATTA ATTGAAAATGGAGGAGTCATTATCTATATGGACGATATCTTAATCCATACAAAAACACAAAAACAACTTGATGAA CTTACCAAACAAGTTCTTCAAATACTCGAACAAAACCATCTCTATCTCAAGACAGAGAAATGCGAATTTGAAACG CAACGTCTAGAATACCTTGGAGTCATTATAACTCCAGATTCTATCGAAATGGATCCAATTAAACTGAAAGGAATT GAAGATTGGCCTGTACCTAAAACGGTCAAGAATGTTCGACAATTCATTGGATTCTGCAACTTCTACAGAAAGTTC ATTCACAATTACGCCAAAATCGCCCAACCTCTCAACTCTCTTATGAGGAAGACAAAGAAATTCGAATGGAATCCA AATGCACAAACAGCATTTGAAACACTTAAACAACAATTCTTAAAACGACCAGTTCTACAAATGGTAGATCAAACC AAACCATTTGAAATAGAATGCGATGCCTCCGCATTTGCCACAGGAGCAGTCTTACTACAACGAGACACCAATGGA GATAAGCATCCGGTTGCTTATTACTCTAAATCCCTTAATCCAGCCGAAAGGAACTATCATGTTTCGGATCAGGAA TTCTTATCAATCATTAGAGCATTAAAAGAATGGAGACACTATGTGGAAGGATCACCTGAACCATTACTAATTTGG TCGGATCACGAGAACCTTACTCGGTGGAAGGAACCCCAACAATTAAACCGAAGACAAGCGAGATGGATGTTATAT ATGACAAGATTCAATTATGTCATCAAACATCTTCCAGGCAATAAGAATGTCTTAGCCGATGCCCTGAGTAGACGT CCAGATCTAACTCCAGAAGGCATAGATAACGAGAACTTAATTGCTCTACCTTCTACGAAGTTTATCAATTTCTTA ACGGAAGAACTAGAAGAGAAGATCAAGGACAAGAAGGACACTATTACACCATCAGAGCAGTTTACTCGAGAAGAA GACATCTATACTTATCAAGGAAGACTTGTGATACCGGATGACTCGGACATCAAGAAGGAACTCTTAACCCGAGTC CATGATCATGAATCAGCTGGACACCCTGGAATAGCCGAAACACTTCGAAAATTAACGAAGGAAGTCTACTGGCCA GGAATGAACACTTATGTCCAGAACTACGTCAAAGGATGCCCCATATGTCAACAATACAAGATCAACAGACATCCA CTAAAACCGCCGATGCAACCGATCAAAGGACCTTCAGTAACGAAGCCATTTACACAAATATCTATGGATCTTATC ACAGATCTACCCCCTAGTGATGGCTATGATGCAATATTGTCCATAGTGGACCATGGACTTACGAAAGGGATAATT CTAACCCCTACTAGGAAAACAGCAACAGCTGATGACATCGCCGAAATGCTAATCGATAAGGTATTCTCTAAATAT GGAACACCTCAGAAGATCATATCAGATCGAGACCCTCGATTCGCAGCCAAATCTATGCAAAGACTCTATGAAAAG CTTAACATCAAGCCCGCATTTTCAACAGCTTATCATCCACAAACTGATGGAACTACAGAACGCTACAATCAAGAA ATAGAATTTTATCTTGCAGTATATACTTCAAGAAACCCAAACACATGGAGACGAGCATTACCTATGATTGAATTC GTTCACAATACTAAACCACATGCAGGAAGACAACACTCGCCTTCAGAACTTATATTAGGATACAATCCTAAAGCA TTCATTAACAAAGAAGAATCAAATGTACCTTCTATCGAAGAGAAGACATTATTCTTAGAACAAGCTAGAGAAGCA GCAATCGAAGCACATGAGCAAGCACGTTTGAAGATGGCTAACCGAAGTAACCGACCCTGGAATGCACTTAAGGTT GGTGATAGAGTTTGGTTAGATAACCGAAACTTGCCCGTGCCGTACGCATCAAAGAAGCTCAGTCAAAGAAGAGAA GGACCCTTCAGAGTAATTAGAAGAACTTCTCCCACAACATACGAGTTAGAACTTCCGAAGCGATGGAAGATACAC AACAAATTCCATGCATCTCTGCTTACACCCGTAGTAGAGAATGACATCTATGGAAAGCATAATCCACAGCCACCT CCGACATTAGTGTATGGAGAAGAGGAGTATGAAGTCGAAGCGATCCTTAATCACAGAGCAAGGAAGAGACGCTTG GGAAATGGAAGACTCGCAACAAGAACAGAATATCTTGTCAGATGGCAAGGATATGGACCGTCAGAGGATTCATGG GAATCGGAAGAAGATCTTGCGAATTCAAGCGAGATACTTGAAGAGTATAAGAACCTGAAGAAACTCAGCTAA |
| Gene | >Agabi119p4|720800 ATGAATGCCGATGGATCAAGAAATGCATCAGGAGTATGCACACACTATGTCCTACTCAACATCGAAATCAACAAC AAGAAAATGTTGATACAAGCAAGCATAGTATCGCTTGGAAACCACAAACTATTCTTAGGAATATCATGGCTAAGA AAATTCAATCCAGCAATAGATTGGACAAAACAAACTCTAAAATGGAGAGATGAAGATGACGACTCAACTCTTACA CTTTCTAGAGGACCATCAAGCAACTTCATTAACAATATCTTCGTTGAAATCAACTCGAAAAGCAATACTTCACAA CAGCTATTCAATCAAGCTGAAAAGAAGAAAACGGAATCTGATCCTGCTAAAGCAGTACCGAAAAGATTTCACAAG TTTCTCAAAGTATTCAACAAAGTAGAATCAGAGAAATTACCACCAAGACGTCCTTGGGATCACAAAATTGAAGTT CAAACCTACTTCAAACCCAAGAGAATGCCAGTCTACAATCTAACACCTATAGAACGAAAAGAATTAGACAAGTTC ATAGCTGAAAACCTACGAAAGGGATACATCCGACAATCTAAATCACCAATGGCATCATCCTTCTTCTTTGTTGGA AAGAAAGGAGGAGATCTACGCCCATGTCAAGATTATCGCTATCTTAATCAAAACACGATTAAGAATGCTCACCCT ATTCCAAACATTGCTCGAATCATGGATAAACTAAAGGATTCGAAATGGTTTACAAAGCTAGATGTCAGACTAGGC TATAACAATGTCAGAATTCATGAAGGAGATGAATGGAAAGCAGCATTCAGAACACCTAATGGATTATACGAGCCT ACTGTCATGTTCTTTGGAATGACAAACTCGCCAGCCACATTTCAATCAATGATGGATCACATTTTCAAACAATTA ATTGAAAATGGAGGAGTCATTATCTATATGGACGATATCTTAATCCATACAAAAACACAAAAACAACTTGATGAA CTTACCAAACAAGTTCTTCAAATACTCGAACAAAACCATCTCTATCTCAAGACAGAGAAATGCGAATTTGAAACG CAACGTCTAGAATACCTTGGAGTCATTATAACTCCAGATTCTATCGAAATGGATCCAATTAAACTGAAAGGAATT GAAGATTGGCCTGTACCTAAAACGGTCAAGAATGTTCGACAATTCATTGGATTCTGCAACTTCTACAGAAAGTTC ATTCACAATTACGCCAAAATCGCCCAACCTCTCAACTCTCTTATGAGGAAGACAAAGAAATTCGAATGGAATCCA AATGCACAAACAGCATTTGAAACACTTAAACAACAATTCTTAAAACGACCAGTTCTACAAATGGTAGATCAAACC AAACCATTTGAAATAGAATGCGATGCCTCCGCATTTGCCACAGGAGCAGTCTTACTACAACGAGACACCAATGGA GATAAGCATCCGGTTGCTTATTACTCTAAATCCCTTAATCCAGCCGAAAGGAACTATCATGTTTCGGATCAGGAA TTCTTATCAATCATTAGAGCATTAAAAGAATGGAGACACTATGTGGAAGGATCACCTGAACCATTACTAATTTGG TCGGATCACGAGAACCTTACTCGGTGGAAGGAACCCCAACAATTAAACCGAAGACAAGCGAGATGGATGTTATAT ATGACAAGATTCAATTATGTCATCAAACATCTTCCAGGCAATAAGAATGTCTTAGCCGATGCCCTGAGTAGACGT CCAGATCTAACTCCAGAAGGCATAGATAACGAGAACTTAATTGCTCTACCTTCTACGAAGTTTATCAATTTCTTA ACGGAAGAACTAGAAGAGAAGATCAAGGACAAGAAGGACACTATTACACCATCAGAGCAGTTTACTCGAGAAGAA GACATCTATACTTATCAAGGAAGACTTGTGATACCGGATGACTCGGACATCAAGAAGGAACTCTTAACCCGAGTC CATGATCATGAATCAGCTGGACACCCTGGAATAGCCGAAACACTTCGAAAATTAACGAAGGAAGTCTACTGGCCA GGAATGAACACTTATGTCCAGAACTACGTCAAAGGATGCCCCATATGTCAACAATACAAGATCAACAGACATCCA CTAAAACCGCCGATGCAACCGATCAAAGGACCTTCAGTAACGAAGCCATTTACACAAATATCTATGGATCTTATC ACAGATCTACCCCCTAGTGATGGCTATGATGCAATATTGTCCATAGTGGACCATGGACTTACGAAAGGGATAATT CTAACCCCTACTAGGAAAACAGCAACAGCTGATGACATCGCCGAAATGCTAATCGATAAGGTATTCTCTAAATAT GGAACACCTCAGAAGATCATATCAGATCGAGACCCTCGATTCGCAGCCAAATCTATGCAAAGACTCTATGAAAAG CTTAACATCAAGCCCGCATTTTCAACAGCTTATCATCCACAAACTGATGGAACTACAGAACGCTACAATCAAGAA ATAGAATTTTATCTTGCAGTATATACTTCAAGAAACCCAAACACATGGAGACGAGCATTACCTATGATTGAATTC GTTCACAATACTAAACCACATGCAGGAAGACAACACTCGCCTTCAGAACTTATATTAGGATACAATCCTAAAGCA TTCATTAACAAAGAAGAATCAAATGTACCTTCTATCGAAGAGAAGACATTATTCTTAGAACAAGCTAGAGAAGCA GCAATCGAAGCACATGAGCAAGCACGTTTGAAGATGGCTAACCGAAGTAACCGACCCTGGAATGCACTTAAGGTT GGTGATAGAGTTTGGTTAGATAACCGAAACTTGCCCGTGCCGTACGCATCAAAGAAGCTCAGTCAAAGAAGAGAA GGACCCTTCAGAGTAATTAGAAGAACTTCTCCCACAACATACGAGTTAGAACTTCCGAAGCGATGGAAGATACAC AACAAATTCCATGCATCTCTGCTTACACCCGTAGTAGAGAATGACATCTATGGAAAGCATAATCCACAGCCACCT CCGACATTAGTGTATGGAGAAGAGGAGTATGAAGTCGAAGCGATCCTTAATCACAGAGCAAGGAAGAGACGCTTG GGAAATGGAAGACTCGCAACAAGAACAGAATATCTTGTCAGATGGCAAGGATATGGACCGTCAGAGGATTCATGG GAATCGGAAGAAGATCTTGCGAATTCAAGCGAGATACTTGAAGAGTATAAGAACCTGAAGAAACTCAGCTAA |