Protein ID | Agabi119p4|720600 |
Gene name | |
Location | scaffold_09:1452663..1453362 |
Strand | - |
Gene length (bp) | 699 |
Transcript length (bp) | 699 |
Coding sequence length (bp) | 699 |
Protein length (aa) | 233 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 8.8E-13 | 103 | 221 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 42 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|720600 MANTGGSAPPVFADLAKFNRSNWVIWSGLIKIAADLRGVYGYLDGSIANPSTITPNPLTIAIPALPPVAATTPQT ATQTEQITPTQTPIETPWESITPSSTEWRVRNAWAMGLLIYNTNDPVGLGITIHSSAADAWKLYVETYQVASEVA ILNAEMDLRNMTYADGQDFVEFISRIRTKWSNVTALGASINDKAFRTIILNALPRSWDSIVATLYTTQSSRDAIN QLMTHWS* |
Coding | >Agabi119p4|720600 ATGGCCAACACTGGTGGTAGCGCACCACCTGTCTTCGCTGACTTGGCAAAGTTTAACAGATCCAACTGGGTAATT TGGAGTGGACTCATAAAGATTGCAGCGGACTTAAGAGGTGTCTACGGATACCTTGACGGCTCGATCGCAAACCCT TCTACCATCACTCCAAATCCTCTAACCATAGCGATCCCCGCTTTGCCCCCAGTTGCAGCAACAACTCCACAGACG GCTACACAAACAGAACAGATTACCCCTACACAAACCCCCATCGAGACGCCATGGGAGTCTATAACGCCTTCCTCG ACCGAGTGGAGAGTTCGTAATGCCTGGGCTATGGGGCTACTCATCTACAACACCAACGATCCCGTTGGCCTCGGC ATCACCATCCACAGTTCGGCAGCTGACGCTTGGAAATTGTATGTTGAAACTTATCAAGTTGCGTCGGAGGTAGCT ATCCTCAACGCCGAGATGGATCTCCGTAACATGACCTATGCGGATGGTCAGGACTTTGTCGAGTTTATATCGCGC ATACGTACAAAATGGTCTAATGTGACGGCACTTGGGGCTAGCATAAATGATAAAGCCTTTAGAACCATTATCCTC AATGCTCTTCCACGCTCTTGGGATTCCATTGTTGCCACTTTATACACCACTCAGTCTTCTCGCGATGCAATCAAC CAGCTCATGACCCATTGGTCTTGA |
Transcript | >Agabi119p4|720600 ATGGCCAACACTGGTGGTAGCGCACCACCTGTCTTCGCTGACTTGGCAAAGTTTAACAGATCCAACTGGGTAATT TGGAGTGGACTCATAAAGATTGCAGCGGACTTAAGAGGTGTCTACGGATACCTTGACGGCTCGATCGCAAACCCT TCTACCATCACTCCAAATCCTCTAACCATAGCGATCCCCGCTTTGCCCCCAGTTGCAGCAACAACTCCACAGACG GCTACACAAACAGAACAGATTACCCCTACACAAACCCCCATCGAGACGCCATGGGAGTCTATAACGCCTTCCTCG ACCGAGTGGAGAGTTCGTAATGCCTGGGCTATGGGGCTACTCATCTACAACACCAACGATCCCGTTGGCCTCGGC ATCACCATCCACAGTTCGGCAGCTGACGCTTGGAAATTGTATGTTGAAACTTATCAAGTTGCGTCGGAGGTAGCT ATCCTCAACGCCGAGATGGATCTCCGTAACATGACCTATGCGGATGGTCAGGACTTTGTCGAGTTTATATCGCGC ATACGTACAAAATGGTCTAATGTGACGGCACTTGGGGCTAGCATAAATGATAAAGCCTTTAGAACCATTATCCTC AATGCTCTTCCACGCTCTTGGGATTCCATTGTTGCCACTTTATACACCACTCAGTCTTCTCGCGATGCAATCAAC CAGCTCATGACCCATTGGTCTTGA |
Gene | >Agabi119p4|720600 ATGGCCAACACTGGTGGTAGCGCACCACCTGTCTTCGCTGACTTGGCAAAGTTTAACAGATCCAACTGGGTAATT TGGAGTGGACTCATAAAGATTGCAGCGGACTTAAGAGGTGTCTACGGATACCTTGACGGCTCGATCGCAAACCCT TCTACCATCACTCCAAATCCTCTAACCATAGCGATCCCCGCTTTGCCCCCAGTTGCAGCAACAACTCCACAGACG GCTACACAAACAGAACAGATTACCCCTACACAAACCCCCATCGAGACGCCATGGGAGTCTATAACGCCTTCCTCG ACCGAGTGGAGAGTTCGTAATGCCTGGGCTATGGGGCTACTCATCTACAACACCAACGATCCCGTTGGCCTCGGC ATCACCATCCACAGTTCGGCAGCTGACGCTTGGAAATTGTATGTTGAAACTTATCAAGTTGCGTCGGAGGTAGCT ATCCTCAACGCCGAGATGGATCTCCGTAACATGACCTATGCGGATGGTCAGGACTTTGTCGAGTTTATATCGCGC ATACGTACAAAATGGTCTAATGTGACGGCACTTGGGGCTAGCATAAATGATAAAGCCTTTAGAACCATTATCCTC AATGCTCTTCCACGCTCTTGGGATTCCATTGTTGCCACTTTATACACCACTCAGTCTTCTCGCGATGCAATCAAC CAGCTCATGACCCATTGGTCTTGA |