Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|720600
Gene name
Locationscaffold_09:1452663..1453362
Strand-
Gene length (bp)699
Transcript length (bp)699
Coding sequence length (bp)699
Protein length (aa) 233

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.8E-13 103 221

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|720600
MANTGGSAPPVFADLAKFNRSNWVIWSGLIKIAADLRGVYGYLDGSIANPSTITPNPLTIAIPALPPVAATTPQT
ATQTEQITPTQTPIETPWESITPSSTEWRVRNAWAMGLLIYNTNDPVGLGITIHSSAADAWKLYVETYQVASEVA
ILNAEMDLRNMTYADGQDFVEFISRIRTKWSNVTALGASINDKAFRTIILNALPRSWDSIVATLYTTQSSRDAIN
QLMTHWS*
Coding >Agabi119p4|720600
ATGGCCAACACTGGTGGTAGCGCACCACCTGTCTTCGCTGACTTGGCAAAGTTTAACAGATCCAACTGGGTAATT
TGGAGTGGACTCATAAAGATTGCAGCGGACTTAAGAGGTGTCTACGGATACCTTGACGGCTCGATCGCAAACCCT
TCTACCATCACTCCAAATCCTCTAACCATAGCGATCCCCGCTTTGCCCCCAGTTGCAGCAACAACTCCACAGACG
GCTACACAAACAGAACAGATTACCCCTACACAAACCCCCATCGAGACGCCATGGGAGTCTATAACGCCTTCCTCG
ACCGAGTGGAGAGTTCGTAATGCCTGGGCTATGGGGCTACTCATCTACAACACCAACGATCCCGTTGGCCTCGGC
ATCACCATCCACAGTTCGGCAGCTGACGCTTGGAAATTGTATGTTGAAACTTATCAAGTTGCGTCGGAGGTAGCT
ATCCTCAACGCCGAGATGGATCTCCGTAACATGACCTATGCGGATGGTCAGGACTTTGTCGAGTTTATATCGCGC
ATACGTACAAAATGGTCTAATGTGACGGCACTTGGGGCTAGCATAAATGATAAAGCCTTTAGAACCATTATCCTC
AATGCTCTTCCACGCTCTTGGGATTCCATTGTTGCCACTTTATACACCACTCAGTCTTCTCGCGATGCAATCAAC
CAGCTCATGACCCATTGGTCTTGA
Transcript >Agabi119p4|720600
ATGGCCAACACTGGTGGTAGCGCACCACCTGTCTTCGCTGACTTGGCAAAGTTTAACAGATCCAACTGGGTAATT
TGGAGTGGACTCATAAAGATTGCAGCGGACTTAAGAGGTGTCTACGGATACCTTGACGGCTCGATCGCAAACCCT
TCTACCATCACTCCAAATCCTCTAACCATAGCGATCCCCGCTTTGCCCCCAGTTGCAGCAACAACTCCACAGACG
GCTACACAAACAGAACAGATTACCCCTACACAAACCCCCATCGAGACGCCATGGGAGTCTATAACGCCTTCCTCG
ACCGAGTGGAGAGTTCGTAATGCCTGGGCTATGGGGCTACTCATCTACAACACCAACGATCCCGTTGGCCTCGGC
ATCACCATCCACAGTTCGGCAGCTGACGCTTGGAAATTGTATGTTGAAACTTATCAAGTTGCGTCGGAGGTAGCT
ATCCTCAACGCCGAGATGGATCTCCGTAACATGACCTATGCGGATGGTCAGGACTTTGTCGAGTTTATATCGCGC
ATACGTACAAAATGGTCTAATGTGACGGCACTTGGGGCTAGCATAAATGATAAAGCCTTTAGAACCATTATCCTC
AATGCTCTTCCACGCTCTTGGGATTCCATTGTTGCCACTTTATACACCACTCAGTCTTCTCGCGATGCAATCAAC
CAGCTCATGACCCATTGGTCTTGA
Gene >Agabi119p4|720600
ATGGCCAACACTGGTGGTAGCGCACCACCTGTCTTCGCTGACTTGGCAAAGTTTAACAGATCCAACTGGGTAATT
TGGAGTGGACTCATAAAGATTGCAGCGGACTTAAGAGGTGTCTACGGATACCTTGACGGCTCGATCGCAAACCCT
TCTACCATCACTCCAAATCCTCTAACCATAGCGATCCCCGCTTTGCCCCCAGTTGCAGCAACAACTCCACAGACG
GCTACACAAACAGAACAGATTACCCCTACACAAACCCCCATCGAGACGCCATGGGAGTCTATAACGCCTTCCTCG
ACCGAGTGGAGAGTTCGTAATGCCTGGGCTATGGGGCTACTCATCTACAACACCAACGATCCCGTTGGCCTCGGC
ATCACCATCCACAGTTCGGCAGCTGACGCTTGGAAATTGTATGTTGAAACTTATCAAGTTGCGTCGGAGGTAGCT
ATCCTCAACGCCGAGATGGATCTCCGTAACATGACCTATGCGGATGGTCAGGACTTTGTCGAGTTTATATCGCGC
ATACGTACAAAATGGTCTAATGTGACGGCACTTGGGGCTAGCATAAATGATAAAGCCTTTAGAACCATTATCCTC
AATGCTCTTCCACGCTCTTGGGATTCCATTGTTGCCACTTTATACACCACTCAGTCTTCTCGCGATGCAATCAAC
CAGCTCATGACCCATTGGTCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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