© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|718550 |
| Gene name | |
| Location | scaffold_09:1344948..1345968 |
| Strand | - |
| Gene length (bp) | 1020 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17917 | RT_RNaseH | RNase H-like domain found in reverse transcriptase | 1.7E-21 | 2 | 69 |
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | 7.3E-19 | 183 | 239 |
| PF17919 | RT_RNaseH_2 | RNase H-like domain found in reverse transcriptase | 7.9E-08 | 2 | 35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT34|TF21_SCHPO | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT35|TF22_SCHPO | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT43|TF28_SCHPO | Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 | 2 | 304 | 2.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CT37|TF24_SCHPO | Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT40|TF29_SCHPO | Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT34|TF21_SCHPO | Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT35|TF22_SCHPO | Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 | 2 | 304 | 1.0E-45 |
| sp|P0CT43|TF28_SCHPO | Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 | 2 | 304 | 2.0E-45 |
| sp|P0CT42|TF27_SCHPO | Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 | 2 | 304 | 2.0E-45 |
| sp|P0CT39|TF26_SCHPO | Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 | 2 | 304 | 2.0E-45 |
| sp|P0CT38|TF25_SCHPO | Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 | 2 | 304 | 2.0E-45 |
| sp|P0CT36|TF23_SCHPO | Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 | 2 | 304 | 2.0E-45 |
| sp|P0CT41|TF212_SCHPO | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 | 2 | 304 | 2.0E-45 |
| sp|Q9UR07|TF211_SCHPO | Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 | 2 | 304 | 2.0E-45 |
| sp|Q7LHG5|YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 | 2 | 327 | 3.0E-25 |
| sp|Q99315|YG31B_YEAST | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 | 2 | 327 | 4.0E-25 |
| sp|P04323|POL3_DROME | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 2 | 297 | 1.0E-19 |
| sp|P20825|POL2_DROME | Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 2 | 297 | 1.0E-19 |
| sp|Q09575|YRD6_CAEEL | Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 | 169 | 326 | 1.0E-12 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 2 | 314 | 4.0E-11 |
| sp|Q8I7P9|POL5_DROME | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 2 | 90 | 2.0E-10 |
| sp|O93209|POL_FFV | Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 | 140 | 317 | 9.0E-10 |
| sp|Q8K259|GIN1_MOUSE | Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2 | 173 | 307 | 1.0E-09 |
| sp|P23074|POL_SFV1 | Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 | 166 | 331 | 3.0E-09 |
| sp|Q87040|POL_SFVCP | Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 | 142 | 331 | 5.0E-09 |
| sp|Q9NXP7|GIN1_HUMAN | Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 | 173 | 307 | 2.0E-08 |
| sp|P14350|POL_FOAMV | Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 | 143 | 331 | 2.0E-08 |
| sp|Q5RBK0|GIN1_PONAB | Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 | 173 | 307 | 2.0E-08 |
| sp|Q4R6I1|GIN1_MACFA | Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1 | 173 | 307 | 3.0E-08 |
| sp|Q66H30|GIN1_RAT | Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1 | 173 | 307 | 4.0E-08 |
| sp|P27401|POL_SFV3L | Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 | 175 | 331 | 6.0E-08 |
| sp|P05400|POL_CERV | Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1 | 5 | 87 | 6.0E-08 |
| sp|P10401|POLY_DROME | Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1 | 2 | 89 | 2.0E-07 |
| sp|A4FUB7|GIN1_BOVIN | Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1 | 200 | 307 | 2.0E-06 |
| sp|Q5DTZ0|NYNRI_MOUSE | Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2 | 173 | 282 | 4.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|718550 MLSEAERNYEIYDKELLAIIKALKLWRHYLLDAKEQFEIWTDHENLKYFREPQKLNARQARWYLMLQEYDFLLRH IPGKTNTKADILSRIIKPDISEDNKNVEMFKDKIFTREFREDVSNYEEMVLLNRRFEVSADQKILEDIRSSKRRE TMVLQEMKKQPEKVWESEGIIFRQGRIYVPEEKELRDRILYDHHYPPDIGHPGQHRMLELLKRTFWWPTIKTDIR GYIRGCDMCQKNKTIRRPDHIPLNPLPIPDKPWEEISIDMIGPLPKSKEKDAIIVIVDRFSKMIHLVHISIKGIR SSRLSSAATTSLVLPSLYTYVHNVHGLDVISLFEVQCDE* |
| Coding | >Agabi119p4|718550 ATGTTATCTGAAGCTGAACGAAACTACGAAATCTACGACAAAGAACTACTAGCCATCATAAAAGCCTTAAAGCTA TGGCGACATTACCTATTGGATGCGAAGGAGCAATTTGAGATATGGACAGATCATGAAAACCTCAAATATTTCCGA GAACCTCAAAAGCTCAACGCTCGACAAGCAAGATGGTACCTCATGTTACAGGAATACGACTTCCTTCTACGACAC ATTCCAGGAAAGACTAACACCAAAGCCGACATCTTATCTCGCATCATTAAACCGGATATCTCAGAAGACAACAAA AACGTCGAAATGTTCAAAGACAAAATTTTCACACGAGAATTCAGAGAAGACGTATCGAATTACGAAGAAATGGTA TTGCTCAACCGACGGTTTGAAGTATCGGCAGATCAGAAAATATTGGAGGACATCAGAAGCTCAAAAAGAAGGGAA ACAATGGTACTACAAGAGATGAAGAAACAACCAGAAAAAGTATGGGAATCAGAAGGAATTATTTTCCGACAAGGA AGGATCTACGTCCCAGAAGAGAAGGAACTCAGAGATCGAATCCTTTACGATCATCATTACCCACCCGACATCGGA CATCCAGGACAACACCGCATGTTAGAGTTGCTAAAACGGACCTTTTGGTGGCCCACGATCAAGACGGACATCAGG GGATACATCAGAGGATGTGACATGTGCCAGAAGAACAAGACAATTCGACGACCCGATCACATTCCGCTTAACCCA CTTCCTATCCCCGACAAACCTTGGGAAGAAATATCTATAGACATGATCGGACCATTACCGAAATCAAAGGAGAAG GATGCTATTATTGTTATTGTCGACAGGTTCTCCAAAATGATCCACCTCGTTCATATATCAATTAAGGGGATTCGG TCGTCCAGGCTTTCAAGCGCTGCGACAACTTCTCTGGTTCTACCATCATTATATACATATGTTCATAATGTCCAT GGTCTTGATGTGATCTCCTTGTTTGAGGTACAATGTGACGAGTGA |
| Transcript | >Agabi119p4|718550 ATGTTATCTGAAGCTGAACGAAACTACGAAATCTACGACAAAGAACTACTAGCCATCATAAAAGCCTTAAAGCTA TGGCGACATTACCTATTGGATGCGAAGGAGCAATTTGAGATATGGACAGATCATGAAAACCTCAAATATTTCCGA GAACCTCAAAAGCTCAACGCTCGACAAGCAAGATGGTACCTCATGTTACAGGAATACGACTTCCTTCTACGACAC ATTCCAGGAAAGACTAACACCAAAGCCGACATCTTATCTCGCATCATTAAACCGGATATCTCAGAAGACAACAAA AACGTCGAAATGTTCAAAGACAAAATTTTCACACGAGAATTCAGAGAAGACGTATCGAATTACGAAGAAATGGTA TTGCTCAACCGACGGTTTGAAGTATCGGCAGATCAGAAAATATTGGAGGACATCAGAAGCTCAAAAAGAAGGGAA ACAATGGTACTACAAGAGATGAAGAAACAACCAGAAAAAGTATGGGAATCAGAAGGAATTATTTTCCGACAAGGA AGGATCTACGTCCCAGAAGAGAAGGAACTCAGAGATCGAATCCTTTACGATCATCATTACCCACCCGACATCGGA CATCCAGGACAACACCGCATGTTAGAGTTGCTAAAACGGACCTTTTGGTGGCCCACGATCAAGACGGACATCAGG GGATACATCAGAGGATGTGACATGTGCCAGAAGAACAAGACAATTCGACGACCCGATCACATTCCGCTTAACCCA CTTCCTATCCCCGACAAACCTTGGGAAGAAATATCTATAGACATGATCGGACCATTACCGAAATCAAAGGAGAAG GATGCTATTATTGTTATTGTCGACAGGTTCTCCAAAATGATCCACCTCGTTCATATATCAATTAAGGGGATTCGG TCGTCCAGGCTTTCAAGCGCTGCGACAACTTCTCTGGTTCTACCATCATTATATACATATGTTCATAATGTCCAT GGTCTTGATGTGATCTCCTTGTTTGAGGTACAATGTGACGAGTGA |
| Gene | >Agabi119p4|718550 ATGTTATCTGAAGCTGAACGAAACTACGAAATCTACGACAAAGAACTACTAGCCATCATAAAAGCCTTAAAGCTA TGGCGACATTACCTATTGGATGCGAAGGAGCAATTTGAGATATGGACAGATCATGAAAACCTCAAATATTTCCGA GAACCTCAAAAGCTCAACGCTCGACAAGCAAGATGGTACCTCATGTTACAGGAATACGACTTCCTTCTACGACAC ATTCCAGGAAAGACTAACACCAAAGCCGACATCTTATCTCGCATCATTAAACCGGATATCTCAGAAGACAACAAA AACGTCGAAATGTTCAAAGACAAAATTTTCACACGAGAATTCAGAGAAGACGTATCGAATTACGAAGAAATGGTA TTGCTCAACCGACGGTTTGAAGTATCGGCAGATCAGAAAATATTGGAGGACATCAGAAGCTCAAAAAGAAGGGAA ACAATGGTACTACAAGAGATGAAGAAACAACCAGAAAAAGTATGGGAATCAGAAGGAATTATTTTCCGACAAGGA AGGATCTACGTCCCAGAAGAGAAGGAACTCAGAGATCGAATCCTTTACGATCATCATTACCCACCCGACATCGGA CATCCAGGACAACACCGCATGTTAGAGTTGCTAAAACGGACCTTTTGGTGGCCCACGATCAAGACGGACATCAGG GGATACATCAGAGGATGTGACATGTGCCAGAAGAACAAGACAATTCGACGACCCGATCACATTCCGCTTAACCCA CTTCCTATCCCCGACAAACCTTGGGAAGAAATATCTATAGACATGATCGGACCATTACCGAAATCAAAGGAGAAG GATGCTATTATTGTTATTGTCGACAGGTTCTCCAAAATGATCCACCTCGTTCATATATCAATTAAGGGGATTCGG TCGTCCAGGCTTTCAAGCGCTGCGACAACTTCTCTGGTTCTACCATCATTATATACATATGTTCATAATGTCCAT GGTCTTGATGTGATCTCCTTGTTTGAGGTACAATGTGACGAGTGA |