Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|718100
Gene name
Location	scaffold_09:1325912..1326869
Strand	+
Gene length (bp)	957
Transcript length (bp)	957
Coding sequence length (bp)	957
Protein length (aa)	319

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	2.2E-09	14	128

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P10978\|POLX_TOBAC	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1	14	316	4.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 37	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|718100 MVEQEQRIHFQGIQDSPVKMWEALEAVHRQKRAGMCFNAYDDLFSIRKLEEESLQSLINRVESSKQKIKELRPSS FTLEQLDDELASMALIRALPDEFSGFTSSLLLMDKLDKTTVHQAFVTEDLQRRKRAQDASGSSQALAARSGSQFA TKTCDFCGREGHKFAECKTFERAKSRAQEDAQKPRTPYKRANKAQEESGSSSSTQTPEKVQRVTEFAGNASTPYP SPSPLPSTPLQLDADFHWLADTGATSHMTPHRHWFKSYTSHKIPIRLADNSIVYSSGVGSVVFEPVVNGKVVRAV ELTRVLHVPALRSNLLLE*
Coding	>Agabi119p4\|718100 ATGGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAG GCTGTACATCGACAGAAAAGGGCTGGAATGTGTTTCAATGCCTATGATGACCTCTTCTCCATTCGAAAACTCGAG GAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACAAAAAATCAAGGAGCTCAGACCCTCTTCC TTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGC TTTACTTCGTCCTTATTGCTTATGGACAAGCTGGACAAGACTACAGTCCATCAGGCCTTTGTCACTGAGGACTTA CAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCTCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCG ACGAAAACCTGCGACTTCTGCGGGAGAGAGGGCCACAAGTTCGCTGAATGCAAAACCTTCGAGAGAGCGAAGTCC CGGGCACAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGC TCTAGCTCGACTCAGACTCCCGAAAAAGTGCAGAGAGTCACTGAGTTTGCTGGCAATGCAAGTACTCCTTATCCC TCACCTTCTCCCTTGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACT TCTCATATGACCCCTCACCGGCACTGGTTCAAGTCATATACCAGTCACAAAATCCCCATCCGACTAGCTGACAAC TCTATTGTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTC GAGTTGACTAGAGTTTTGCATGTCCCGGCTCTCCGGAGCAATCTACTGTTAGAGTGA
Transcript	>Agabi119p4\|718100 ATGGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAG GCTGTACATCGACAGAAAAGGGCTGGAATGTGTTTCAATGCCTATGATGACCTCTTCTCCATTCGAAAACTCGAG GAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACAAAAAATCAAGGAGCTCAGACCCTCTTCC TTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGC TTTACTTCGTCCTTATTGCTTATGGACAAGCTGGACAAGACTACAGTCCATCAGGCCTTTGTCACTGAGGACTTA CAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCTCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCG ACGAAAACCTGCGACTTCTGCGGGAGAGAGGGCCACAAGTTCGCTGAATGCAAAACCTTCGAGAGAGCGAAGTCC CGGGCACAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGC TCTAGCTCGACTCAGACTCCCGAAAAAGTGCAGAGAGTCACTGAGTTTGCTGGCAATGCAAGTACTCCTTATCCC TCACCTTCTCCCTTGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACT TCTCATATGACCCCTCACCGGCACTGGTTCAAGTCATATACCAGTCACAAAATCCCCATCCGACTAGCTGACAAC TCTATTGTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTC GAGTTGACTAGAGTTTTGCATGTCCCGGCTCTCCGGAGCAATCTACTGTTAGAGTGA
Gene	>Agabi119p4\|718100 ATGGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAG GCTGTACATCGACAGAAAAGGGCTGGAATGTGTTTCAATGCCTATGATGACCTCTTCTCCATTCGAAAACTCGAG GAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACAAAAAATCAAGGAGCTCAGACCCTCTTCC TTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGC TTTACTTCGTCCTTATTGCTTATGGACAAGCTGGACAAGACTACAGTCCATCAGGCCTTTGTCACTGAGGACTTA CAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCTCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCG ACGAAAACCTGCGACTTCTGCGGGAGAGAGGGCCACAAGTTCGCTGAATGCAAAACCTTCGAGAGAGCGAAGTCC CGGGCACAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGC TCTAGCTCGACTCAGACTCCCGAAAAAGTGCAGAGAGTCACTGAGTTTGCTGGCAATGCAAGTACTCCTTATCCC TCACCTTCTCCCTTGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACT TCTCATATGACCCCTCACCGGCACTGGTTCAAGTCATATACCAGTCACAAAATCCCCATCCGACTAGCTGACAAC TCTATTGTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTC GAGTTGACTAGAGTTTTGCATGTCCCGGCTCTCCGGAGCAATCTACTGTTAGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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