Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|716800
Gene name
Locationscaffold_09:1267762..1268269
Strand-
Gene length (bp)507
Transcript length (bp)507
Coding sequence length (bp)507
Protein length (aa) 169

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.3E-20 67 125

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P0CT39|TF26_SCHPO Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 41 168 9.0E-20
sp|P0CT38|TF25_SCHPO Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 41 168 9.0E-20
sp|P0CT37|TF24_SCHPO Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 41 168 9.0E-20
sp|P0CT36|TF23_SCHPO Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 41 168 9.0E-20
sp|P0CT35|TF22_SCHPO Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 41 168 9.0E-20
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Swissprot ID Swissprot Description Start End E-value
sp|P0CT39|TF26_SCHPO Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1 41 168 9.0E-20
sp|P0CT38|TF25_SCHPO Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1 41 168 9.0E-20
sp|P0CT37|TF24_SCHPO Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1 41 168 9.0E-20
sp|P0CT36|TF23_SCHPO Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1 41 168 9.0E-20
sp|P0CT35|TF22_SCHPO Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1 41 168 9.0E-20
sp|P0CT34|TF21_SCHPO Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1 41 168 9.0E-20
sp|P0CT41|TF212_SCHPO Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1 41 168 9.0E-20
sp|P0CT43|TF28_SCHPO Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1 41 168 9.0E-20
sp|P0CT42|TF27_SCHPO Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1 41 168 9.0E-20
sp|P0CT40|TF29_SCHPO Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1 41 168 9.0E-20
sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1 41 168 1.0E-19
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 16 168 4.0E-13
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 16 168 5.0E-13
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 48 168 4.0E-08
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 35 168 8.0E-08
sp|Q87040|POL_SFVCP Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 2 168 3.0E-07
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 49 168 4.0E-07
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 48 168 6.0E-07
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 74 168 4.0E-06
sp|Q5DTZ0|NYNRI_MOUSE Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2 52 168 6.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 46 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|716800
MEEGHRLINAEEEKILEEIQKSGAKEDDMVNVVEEMKRAKVKLLRGDEWKLEEGLVLKEGKVYVPKDKTLRMKII
QLHHDTPIAGHGGQWKTVKMVMRNYWWPGVTKQVQKYVEGCDQCQRNKNRPTPLAGKLMPNPIPTKPWADVSVNF
IVKLPESQGMDSILVVCD*
Coding >Agabi119p4|716800
ATGGAAGAAGGTCATAGGTTAATCAATGCTGAGGAAGAGAAAATATTAGAGGAAATCCAAAAATCAGGAGCAAAA
GAAGATGACATGGTAAATGTGGTAGAAGAAATGAAGCGAGCAAAAGTGAAGTTGTTGAGGGGAGACGAGTGGAAA
CTGGAAGAAGGACTAGTGCTAAAGGAAGGAAAAGTCTACGTGCCAAAGGACAAAACACTAAGGATGAAAATAATT
CAACTACATCATGATACTCCCATTGCTGGACATGGAGGACAATGGAAGACAGTCAAAATGGTGATGCGCAATTAC
TGGTGGCCAGGCGTCACTAAGCAAGTCCAGAAATACGTGGAAGGATGCGACCAATGCCAACGGAATAAGAATCGA
CCAACACCACTGGCAGGAAAACTAATGCCAAACCCTATCCCTACAAAACCATGGGCCGATGTATCTGTCAACTTC
ATAGTAAAATTACCAGAATCTCAGGGAATGGACTCAATCTTAGTGGTGTGCGATTGA
Transcript >Agabi119p4|716800
ATGGAAGAAGGTCATAGGTTAATCAATGCTGAGGAAGAGAAAATATTAGAGGAAATCCAAAAATCAGGAGCAAAA
GAAGATGACATGGTAAATGTGGTAGAAGAAATGAAGCGAGCAAAAGTGAAGTTGTTGAGGGGAGACGAGTGGAAA
CTGGAAGAAGGACTAGTGCTAAAGGAAGGAAAAGTCTACGTGCCAAAGGACAAAACACTAAGGATGAAAATAATT
CAACTACATCATGATACTCCCATTGCTGGACATGGAGGACAATGGAAGACAGTCAAAATGGTGATGCGCAATTAC
TGGTGGCCAGGCGTCACTAAGCAAGTCCAGAAATACGTGGAAGGATGCGACCAATGCCAACGGAATAAGAATCGA
CCAACACCACTGGCAGGAAAACTAATGCCAAACCCTATCCCTACAAAACCATGGGCCGATGTATCTGTCAACTTC
ATAGTAAAATTACCAGAATCTCAGGGAATGGACTCAATCTTAGTGGTGTGCGATTGA
Gene >Agabi119p4|716800
ATGGAAGAAGGTCATAGGTTAATCAATGCTGAGGAAGAGAAAATATTAGAGGAAATCCAAAAATCAGGAGCAAAA
GAAGATGACATGGTAAATGTGGTAGAAGAAATGAAGCGAGCAAAAGTGAAGTTGTTGAGGGGAGACGAGTGGAAA
CTGGAAGAAGGACTAGTGCTAAAGGAAGGAAAAGTCTACGTGCCAAAGGACAAAACACTAAGGATGAAAATAATT
CAACTACATCATGATACTCCCATTGCTGGACATGGAGGACAATGGAAGACAGTCAAAATGGTGATGCGCAATTAC
TGGTGGCCAGGCGTCACTAAGCAAGTCCAGAAATACGTGGAAGGATGCGACCAATGCCAACGGAATAAGAATCGA
CCAACACCACTGGCAGGAAAACTAATGCCAAACCCTATCCCTACAAAACCATGGGCCGATGTATCTGTCAACTTC
ATAGTAAAATTACCAGAATCTCAGGGAATGGACTCAATCTTAGTGGTGTGCGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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