Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|702300
Gene name
Locationscaffold_08:1220546..1221372
Strand+
Gene length (bp)826
Transcript length (bp)657
Coding sequence length (bp)657
Protein length (aa) 219

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11705 RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 4.3E-19 28 197

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0006383 transcription by RNA polymerase III Yes
GO:0006725 cellular aromatic compound metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0008152 metabolic process No
GO:0044249 cellular biosynthetic process No
GO:0097659 nucleic acid-templated transcription No
GO:0046483 heterocycle metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0009059 macromolecule biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0006351 transcription, DNA-templated No
GO:0044238 primary metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0008150 biological_process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0009058 biosynthetic process No
GO:0009987 cellular process No
GO:0016070 RNA metabolic process No
GO:0071704 organic substance metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0018130 heterocycle biosynthetic process No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|702300
MSRGRGGGRGGRGGGRGGFGGAQTLPPMGLTFADIQNLSRDPTQLYPPRQVPVFAEPDGDEQEVIDLQLGFIKRL
RESPYYIVERTKSNELPRYSDKYRPSLGSQPMLKKKDLNPDFFPREVFEDYFNPKKKRKVDSKSRSRKGAIDLDE
FNETDNEEDKSDNDRGSQASEEQEEDYDVDEEYDNDYAENYFDNGEDDDYDNLGDGGADEGGGGMDYD*
Coding >Agabi119p4|702300
ATGTCCCGGGGTCGAGGTGGAGGTCGCGGAGGTCGCGGCGGAGGACGAGGAGGCTTTGGCGGAGCGCAGACTCTT
CCTCCAATGGGCCTCACCTTTGCAGACATCCAGAATCTCTCCAGGGATCCCACTCAGCTTTACCCACCTAGACAA
GTTCCGGTGTTTGCCGAACCAGACGGGGATGAACAAGAAGTTATCGACCTCCAACTCGGTTTCATCAAGCGTCTA
CGGGAATCACCGTATTATATTGTCGAGCGTACAAAATCGAATGAATTGCCTCGGTACTCTGACAAGTATCGACCC
TCGCTGGGTTCACAGCCCATGCTTAAGAAAAAGGATCTCAATCCAGATTTTTTCCCTCGTGAAGTGTTTGAAGAC
TATTTTAATCCTAAAAAGAAGCGGAAGGTCGACTCCAAATCCCGTTCACGGAAAGGTGCCATAGATCTGGACGAA
TTCAATGAGACGGACAACGAGGAAGACAAGTCGGACAACGATCGGGGTTCGCAAGCGTCCGAGGAACAAGAAGAA
GATTACGATGTCGATGAAGAATATGACAATGATTATGCGGAAAATTATTTCGACAACGGAGAAGACGACGACTAT
GATAATCTCGGTGACGGTGGTGCGGACGAAGGAGGCGGCGGCATGGACTACGACTAG
Transcript >Agabi119p4|702300
ATGTCCCGGGGTCGAGGTGGAGGTCGCGGAGGTCGCGGCGGAGGACGAGGAGGCTTTGGCGGAGCGCAGACTCTT
CCTCCAATGGGCCTCACCTTTGCAGACATCCAGAATCTCTCCAGGGATCCCACTCAGCTTTACCCACCTAGACAA
GTTCCGGTGTTTGCCGAACCAGACGGGGATGAACAAGAAGTTATCGACCTCCAACTCGGTTTCATCAAGCGTCTA
CGGGAATCACCGTATTATATTGTCGAGCGTACAAAATCGAATGAATTGCCTCGGTACTCTGACAAGTATCGACCC
TCGCTGGGTTCACAGCCCATGCTTAAGAAAAAGGATCTCAATCCAGATTTTTTCCCTCGTGAAGTGTTTGAAGAC
TATTTTAATCCTAAAAAGAAGCGGAAGGTCGACTCCAAATCCCGTTCACGGAAAGGTGCCATAGATCTGGACGAA
TTCAATGAGACGGACAACGAGGAAGACAAGTCGGACAACGATCGGGGTTCGCAAGCGTCCGAGGAACAAGAAGAA
GATTACGATGTCGATGAAGAATATGACAATGATTATGCGGAAAATTATTTCGACAACGGAGAAGACGACGACTAT
GATAATCTCGGTGACGGTGGTGCGGACGAAGGAGGCGGCGGCATGGACTACGACTAG
Gene >Agabi119p4|702300
ATGTCCCGGGGTCGAGGTGGAGGTCGCGGAGGTCGCGGCGGAGGACGAGGAGGCTTTGGCGGAGCGCAGACTCTT
CCTCCAATGGGCCTCACCTTTGCAGACATCCAGAATCTCTCCAGGGATCCCACTCAGCTTTACCCAGTGTGTATG
AATCGTCATTACCAGCCCCTCAACACTATACACGAGCTCATTTTTTTTAAAAAAAACAGCCTAGACAAGTTCCGG
TGTTTGCCGAACCAGACGGGGATGAACAAGAAGTTATCGACCTCCAACTCGGTTTCATCAAGCGTCTACGGGAAT
CACCGTATTATATTGTCGAGCGTACAAAATCGAATGAATTGCCTCGGTACTCTGACAAGTATCGACCCTCGCTGG
GTTCACAGCCCATGCTTAAGAAAAAGGATCTCAATCCAGATTTTTTCCCTCGTGAAGTGTTTGAAGACTATTTTA
ATCCTAAAAAGAAGCGGAAGGGTAGGTTTATTTCACCTCTTACAATACTGCCCGTCATTCATGCCGTTTCTAGTC
GACTCCAAATCCCGTTCACGGAAAGGTGCCATAGATCTGGACGAATTCAATGAGACGGACAACGAGGAAGACAAG
TCGGACAACGATCGGGGTTCGCAAGCGTCCGAGGAACAAGAAGAAGATTACGATGTCGATGAAGAATATGACAAT
GATTATGCGGAAAATTATTTCGACAACGGAGAAGACGACGACTATGATAATCTCGGTGACGGTGGTGCGGACGAA
GGAGGCGGCGGTGAGTTGGTATATTTCCGTCCTACGATTTAGCTAATACTTTGACGCAGGCATGGACTACGACTA
G

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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