© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|696400 |
| Gene name | |
| Location | scaffold_08:524402..526265 |
| Strand | + |
| Gene length (bp) | 1863 |
| Transcript length (bp) | 1863 |
| Coding sequence length (bp) | 1863 |
| Protein length (aa) | 621 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | 1.9E-18 | 186 | 239 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P27401|POL_SFV3L | Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 | 176 | 413 | 5.0E-16 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 184 | 508 | 1.0E-15 |
| sp|P23074|POL_SFV1 | Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 | 190 | 413 | 6.0E-15 |
| sp|Q87040|POL_SFVCP | Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 | 164 | 413 | 2.0E-14 |
| sp|P14350|POL_FOAMV | Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 | 164 | 413 | 4.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P27401|POL_SFV3L | Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 | 176 | 413 | 5.0E-16 |
| sp|P10394|POL4_DROME | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 | 184 | 508 | 1.0E-15 |
| sp|P23074|POL_SFV1 | Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 | 190 | 413 | 6.0E-15 |
| sp|Q87040|POL_SFVCP | Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 | 164 | 413 | 2.0E-14 |
| sp|P14350|POL_FOAMV | Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 | 164 | 413 | 4.0E-14 |
| sp|O93209|POL_FFV | Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 | 189 | 413 | 4.0E-14 |
| sp|P08361|POL_MLVCB | Gag-Pol polyprotein (Fragment) OS=Cas-Br-E murine leukemia virus GN=gag-pol PE=3 SV=1 | 264 | 515 | 7.0E-09 |
| sp|P10272|POL_BAEVM | Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 | 129 | 515 | 1.0E-08 |
| sp|Q2F7J0|POL_XMRV4 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1 | 264 | 515 | 1.0E-08 |
| sp|A1Z651|POL_XMRV6 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1 | 264 | 515 | 1.0E-08 |
| sp|Q9TTC1|POL_KORV | Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1 | 264 | 409 | 2.0E-08 |
| sp|Q2F7J3|POL_XMRV3 | Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1 | 264 | 515 | 2.0E-08 |
| sp|P11227|POL_MLVRD | Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 | 264 | 515 | 4.0E-08 |
| sp|P26810|POL_MLVF5 | Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1 | 264 | 425 | 9.0E-08 |
| sp|P26808|POL_MLVFP | Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1 | 264 | 425 | 9.0E-08 |
| sp|P26809|POL_MLVFF | Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1 | 264 | 425 | 1.0E-07 |
| sp|P31792|POL_FENV1 | Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 | 167 | 411 | 1.0E-07 |
| sp|P21414|POL_GALV | Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1 | 264 | 409 | 1.0E-07 |
| sp|P03356|POL_MLVAV | Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2 | 264 | 425 | 1.0E-07 |
| sp|P31795|POL_MLVRK | Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1 | 264 | 515 | 2.0E-07 |
| sp|Q4R6I1|GIN1_MACFA | Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1 | 159 | 542 | 2.0E-07 |
| sp|P03355|POL_MLVMS | Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4 | 264 | 515 | 2.0E-07 |
| sp|O92815|POL_WDSV | Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1 SV=2 | 131 | 406 | 2.0E-07 |
| sp|Q5RBK0|GIN1_PONAB | Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 | 152 | 542 | 5.0E-07 |
| sp|P03360|POL_AVIRE | Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol PE=3 SV=1 | 264 | 409 | 2.0E-06 |
| sp|Q9NXP7|GIN1_HUMAN | Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 | 159 | 542 | 2.0E-06 |
| sp|P31623|POL_JSRV | Pol polyprotein OS=Sheep pulmonary adenomatosis virus GN=pol PE=3 SV=1 | 188 | 374 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|696400 MNRWISAILLFDFKLRHVPGKEHGPDGLSRRPPAPEDPPVNDDYEDWIDTANAFTTTIATSRQPDDLPWCLTTDT FCIEVLNEIPPLQAVLLAHQHFHHKSALLTHVFTTTASPSSTPSIPRTDKARKRDANLDLVISFLLNPSRPSNIS ESDFKKLVRLATGFFIQDGRLWKKDSRNKHKLVIRDEEKRLDLIRQAHDSLGHKGIFTTRTRLLDRFWWPDLDAD VRWYIKTCHECQTRLIHHFHIPPTVPTPLNLFRKAHIDTMFMPRSHGYRYIVHARCFLSSYPEFRMLRAENARSL ATFIFEDILCRWGAIEELVTDNGPAFIQAAEHLSAKYKINHIRISPYNSQANGIVERRHLDVREALVKASEGEEQ HWTTAAPAVFWAERVSIQKSTGYSPYYIAHGLEPLLPFDLAEATYLAPSLTKPVSTEDLIAARALQLRKRPTDLA QVKEDVLKARYASIREFNKKYENNIRDFDFDDGSLVLVRNSRHDKDLGSKTAPRHFGPMIVLRRTKGGSYILSEL DGSISKLRFAAFRLVPYHPRNLRAVPVTKITDATPEQLDNYTYDVDSADLARPDTPQPQPSPLSPATHPIATSGL VQLASKPLKHQPSPQNYLHD* |
| Coding | >Agabi119p4|696400 ATGAACCGCTGGATTTCGGCCATCCTACTCTTCGACTTCAAGCTGCGACACGTACCCGGAAAGGAACACGGCCCC GATGGCCTCTCTCGACGTCCACCTGCACCCGAAGATCCGCCAGTCAATGACGACTATGAAGACTGGATCGACACG GCAAATGCATTCACTACTACAATCGCAACATCTCGCCAACCCGACGATTTACCATGGTGTCTCACCACCGACACC TTCTGTATAGAAGTCCTCAACGAAATCCCGCCACTACAAGCCGTCCTACTGGCGCACCAGCACTTCCATCATAAG TCTGCACTACTCACCCATGTTTTCACTACCACAGCATCACCCTCCTCGACGCCATCAATTCCCCGAACGGACAAG GCCAGAAAACGAGATGCCAACCTCGATCTAGTAATCTCCTTTCTCCTGAACCCATCCCGACCTTCCAACATTTCT GAAAGCGACTTCAAGAAGCTCGTACGTCTAGCAACAGGATTCTTCATTCAAGATGGACGGCTATGGAAGAAAGAT AGTAGGAACAAGCATAAACTGGTTATAAGGGATGAGGAGAAACGGTTAGATCTAATACGGCAAGCCCACGATTCT CTTGGACATAAGGGCATTTTCACCACTCGTACCCGCCTCCTAGATCGCTTCTGGTGGCCAGACCTCGATGCCGAC GTCCGCTGGTACATCAAAACATGCCATGAATGCCAGACTCGACTCATCCACCACTTCCACATTCCCCCTACTGTT CCTACACCTCTCAATCTGTTTCGCAAAGCTCACATCGACACAATGTTCATGCCCCGCTCGCATGGGTATCGTTAT ATCGTCCACGCGCGCTGCTTCCTTTCTTCCTATCCCGAATTTCGAATGCTTCGTGCTGAAAACGCCCGATCGCTT GCCACTTTCATTTTCGAAGACATACTGTGCCGCTGGGGAGCTATCGAGGAACTCGTTACAGACAACGGTCCTGCA TTTATTCAAGCAGCAGAACACTTGTCAGCAAAATACAAGATCAACCATATCCGGATCTCACCCTACAACTCACAG GCAAACGGTATCGTTGAACGACGTCACCTAGACGTTCGAGAAGCCCTTGTAAAGGCCTCTGAAGGAGAAGAGCAG CATTGGACAACAGCTGCACCCGCTGTCTTTTGGGCTGAACGAGTATCTATTCAGAAATCAACAGGGTACTCACCG TATTACATAGCCCACGGTCTCGAACCCCTCCTCCCTTTCGACCTCGCTGAAGCTACCTACCTCGCACCATCACTC ACCAAACCTGTCTCCACTGAAGATCTCATCGCGGCTCGTGCTCTACAGCTTCGCAAACGTCCCACTGACCTTGCC CAAGTAAAAGAAGATGTTCTGAAGGCTCGTTACGCCTCTATACGAGAATTCAACAAGAAATATGAAAATAACATT CGCGACTTCGACTTCGACGACGGATCCCTCGTCCTTGTTCGTAACTCCAGACACGATAAGGACCTTGGCAGTAAA ACGGCGCCACGTCATTTCGGCCCCATGATCGTGCTCAGAAGAACCAAGGGCGGATCTTACATACTCTCGGAACTC GACGGCTCCATTTCCAAGCTGCGCTTTGCAGCCTTTCGACTTGTTCCCTACCATCCCCGCAACCTTCGAGCAGTT CCCGTCACGAAAATCACAGACGCGACCCCAGAACAACTCGACAACTACACGTACGACGTCGATTCTGCCGACCTA GCTCGTCCTGACACCCCACAACCCCAACCGTCGCCTCTTTCACCAGCAACACACCCTATAGCCACCTCAGGCCTC GTTCAACTCGCTAGCAAGCCACTGAAACATCAACCGAGCCCTCAAAACTACCTGCACGACTAG |
| Transcript | >Agabi119p4|696400 ATGAACCGCTGGATTTCGGCCATCCTACTCTTCGACTTCAAGCTGCGACACGTACCCGGAAAGGAACACGGCCCC GATGGCCTCTCTCGACGTCCACCTGCACCCGAAGATCCGCCAGTCAATGACGACTATGAAGACTGGATCGACACG GCAAATGCATTCACTACTACAATCGCAACATCTCGCCAACCCGACGATTTACCATGGTGTCTCACCACCGACACC TTCTGTATAGAAGTCCTCAACGAAATCCCGCCACTACAAGCCGTCCTACTGGCGCACCAGCACTTCCATCATAAG TCTGCACTACTCACCCATGTTTTCACTACCACAGCATCACCCTCCTCGACGCCATCAATTCCCCGAACGGACAAG GCCAGAAAACGAGATGCCAACCTCGATCTAGTAATCTCCTTTCTCCTGAACCCATCCCGACCTTCCAACATTTCT GAAAGCGACTTCAAGAAGCTCGTACGTCTAGCAACAGGATTCTTCATTCAAGATGGACGGCTATGGAAGAAAGAT AGTAGGAACAAGCATAAACTGGTTATAAGGGATGAGGAGAAACGGTTAGATCTAATACGGCAAGCCCACGATTCT CTTGGACATAAGGGCATTTTCACCACTCGTACCCGCCTCCTAGATCGCTTCTGGTGGCCAGACCTCGATGCCGAC GTCCGCTGGTACATCAAAACATGCCATGAATGCCAGACTCGACTCATCCACCACTTCCACATTCCCCCTACTGTT CCTACACCTCTCAATCTGTTTCGCAAAGCTCACATCGACACAATGTTCATGCCCCGCTCGCATGGGTATCGTTAT ATCGTCCACGCGCGCTGCTTCCTTTCTTCCTATCCCGAATTTCGAATGCTTCGTGCTGAAAACGCCCGATCGCTT GCCACTTTCATTTTCGAAGACATACTGTGCCGCTGGGGAGCTATCGAGGAACTCGTTACAGACAACGGTCCTGCA TTTATTCAAGCAGCAGAACACTTGTCAGCAAAATACAAGATCAACCATATCCGGATCTCACCCTACAACTCACAG GCAAACGGTATCGTTGAACGACGTCACCTAGACGTTCGAGAAGCCCTTGTAAAGGCCTCTGAAGGAGAAGAGCAG CATTGGACAACAGCTGCACCCGCTGTCTTTTGGGCTGAACGAGTATCTATTCAGAAATCAACAGGGTACTCACCG TATTACATAGCCCACGGTCTCGAACCCCTCCTCCCTTTCGACCTCGCTGAAGCTACCTACCTCGCACCATCACTC ACCAAACCTGTCTCCACTGAAGATCTCATCGCGGCTCGTGCTCTACAGCTTCGCAAACGTCCCACTGACCTTGCC CAAGTAAAAGAAGATGTTCTGAAGGCTCGTTACGCCTCTATACGAGAATTCAACAAGAAATATGAAAATAACATT CGCGACTTCGACTTCGACGACGGATCCCTCGTCCTTGTTCGTAACTCCAGACACGATAAGGACCTTGGCAGTAAA ACGGCGCCACGTCATTTCGGCCCCATGATCGTGCTCAGAAGAACCAAGGGCGGATCTTACATACTCTCGGAACTC GACGGCTCCATTTCCAAGCTGCGCTTTGCAGCCTTTCGACTTGTTCCCTACCATCCCCGCAACCTTCGAGCAGTT CCCGTCACGAAAATCACAGACGCGACCCCAGAACAACTCGACAACTACACGTACGACGTCGATTCTGCCGACCTA GCTCGTCCTGACACCCCACAACCCCAACCGTCGCCTCTTTCACCAGCAACACACCCTATAGCCACCTCAGGCCTC GTTCAACTCGCTAGCAAGCCACTGAAACATCAACCGAGCCCTCAAAACTACCTGCACGACTAG |
| Gene | >Agabi119p4|696400 ATGAACCGCTGGATTTCGGCCATCCTACTCTTCGACTTCAAGCTGCGACACGTACCCGGAAAGGAACACGGCCCC GATGGCCTCTCTCGACGTCCACCTGCACCCGAAGATCCGCCAGTCAATGACGACTATGAAGACTGGATCGACACG GCAAATGCATTCACTACTACAATCGCAACATCTCGCCAACCCGACGATTTACCATGGTGTCTCACCACCGACACC TTCTGTATAGAAGTCCTCAACGAAATCCCGCCACTACAAGCCGTCCTACTGGCGCACCAGCACTTCCATCATAAG TCTGCACTACTCACCCATGTTTTCACTACCACAGCATCACCCTCCTCGACGCCATCAATTCCCCGAACGGACAAG GCCAGAAAACGAGATGCCAACCTCGATCTAGTAATCTCCTTTCTCCTGAACCCATCCCGACCTTCCAACATTTCT GAAAGCGACTTCAAGAAGCTCGTACGTCTAGCAACAGGATTCTTCATTCAAGATGGACGGCTATGGAAGAAAGAT AGTAGGAACAAGCATAAACTGGTTATAAGGGATGAGGAGAAACGGTTAGATCTAATACGGCAAGCCCACGATTCT CTTGGACATAAGGGCATTTTCACCACTCGTACCCGCCTCCTAGATCGCTTCTGGTGGCCAGACCTCGATGCCGAC GTCCGCTGGTACATCAAAACATGCCATGAATGCCAGACTCGACTCATCCACCACTTCCACATTCCCCCTACTGTT CCTACACCTCTCAATCTGTTTCGCAAAGCTCACATCGACACAATGTTCATGCCCCGCTCGCATGGGTATCGTTAT ATCGTCCACGCGCGCTGCTTCCTTTCTTCCTATCCCGAATTTCGAATGCTTCGTGCTGAAAACGCCCGATCGCTT GCCACTTTCATTTTCGAAGACATACTGTGCCGCTGGGGAGCTATCGAGGAACTCGTTACAGACAACGGTCCTGCA TTTATTCAAGCAGCAGAACACTTGTCAGCAAAATACAAGATCAACCATATCCGGATCTCACCCTACAACTCACAG GCAAACGGTATCGTTGAACGACGTCACCTAGACGTTCGAGAAGCCCTTGTAAAGGCCTCTGAAGGAGAAGAGCAG CATTGGACAACAGCTGCACCCGCTGTCTTTTGGGCTGAACGAGTATCTATTCAGAAATCAACAGGGTACTCACCG TATTACATAGCCCACGGTCTCGAACCCCTCCTCCCTTTCGACCTCGCTGAAGCTACCTACCTCGCACCATCACTC ACCAAACCTGTCTCCACTGAAGATCTCATCGCGGCTCGTGCTCTACAGCTTCGCAAACGTCCCACTGACCTTGCC CAAGTAAAAGAAGATGTTCTGAAGGCTCGTTACGCCTCTATACGAGAATTCAACAAGAAATATGAAAATAACATT CGCGACTTCGACTTCGACGACGGATCCCTCGTCCTTGTTCGTAACTCCAGACACGATAAGGACCTTGGCAGTAAA ACGGCGCCACGTCATTTCGGCCCCATGATCGTGCTCAGAAGAACCAAGGGCGGATCTTACATACTCTCGGAACTC GACGGCTCCATTTCCAAGCTGCGCTTTGCAGCCTTTCGACTTGTTCCCTACCATCCCCGCAACCTTCGAGCAGTT CCCGTCACGAAAATCACAGACGCGACCCCAGAACAACTCGACAACTACACGTACGACGTCGATTCTGCCGACCTA GCTCGTCCTGACACCCCACAACCCCAACCGTCGCCTCTTTCACCAGCAACACACCCTATAGCCACCTCAGGCCTC GTTCAACTCGCTAGCAAGCCACTGAAACATCAACCGAGCCCTCAAAACTACCTGCACGACTAG |