© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|694400 |
| Gene name | |
| Location | scaffold_08:428561..429343 |
| Strand | - |
| Gene length (bp) | 782 |
| Transcript length (bp) | 363 |
| Coding sequence length (bp) | 363 |
| Protein length (aa) | 121 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01423 | LSM | LSM domain | 4.3E-13 | 5 | 56 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42661|SMD1_SCHPO | Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1 | 1 | 58 | 2.0E-23 |
| sp|P62315|SMD1_MOUSE | Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=1 SV=1 | 1 | 58 | 3.0E-23 |
| sp|Q4R5F6|SMD1_MACFA | Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1 | 1 | 58 | 3.0E-23 |
| sp|P62314|SMD1_HUMAN | Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1 | 1 | 58 | 3.0E-23 |
| sp|Q3ZC10|SMD1_BOVIN | Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1 | 1 | 58 | 3.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42661|SMD1_SCHPO | Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1 | 1 | 58 | 2.0E-23 |
| sp|P62315|SMD1_MOUSE | Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=1 SV=1 | 1 | 58 | 3.0E-23 |
| sp|Q4R5F6|SMD1_MACFA | Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1 | 1 | 58 | 3.0E-23 |
| sp|P62314|SMD1_HUMAN | Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1 | 1 | 58 | 3.0E-23 |
| sp|Q3ZC10|SMD1_BOVIN | Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1 | 1 | 58 | 3.0E-23 |
| sp|Q9VU02|SMD1_DROME | Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=SmD1 PE=1 SV=1 | 1 | 58 | 4.0E-22 |
| sp|Q10013|SMD1_CAEEL | Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=3 SV=1 | 1 | 58 | 3.0E-19 |
| sp|Q02260|SMD1_YEAST | Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD1 PE=1 SV=1 | 1 | 100 | 1.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|694400 MKLVRFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLVAKRKTLEEEEGVAHVL WTEGGDEEAEGVDEAAINTGGCTLQTCKPSVSTCNVSYVFPTWPT* |
| Coding | >Agabi119p4|694400 ATGAAGTTGGTTAGGTTTTTGATGAAATTGAACAATGAGACCGTGACGGTCGAACTCAAAAATGGGTCTTTAGTG CACGGCACGATAACAGGAGTGGATATGCAAATGAACACCCATCTCAAAACTGTGAAAATGACGACACGCAATCGC GAACCTCAGACTCTCGATAGCTTGGTCGCAAAAAGGAAGACACTCGAGGAAGAGGAGGGCGTGGCGCACGTGTTA TGGACCGAGGGCGGGGACGAGGAGGCAGAGGGCGTGGACGAGGCCGCAATTAACACTGGAGGATGCACGTTACAA ACCTGTAAACCATCTGTATCAACCTGTAACGTTTCATATGTTTTTCCGACATGGCCAACATGA |
| Transcript | >Agabi119p4|694400 ATGAAGTTGGTTAGGTTTTTGATGAAATTGAACAATGAGACCGTGACGGTCGAACTCAAAAATGGGTCTTTAGTG CACGGCACGATAACAGGAGTGGATATGCAAATGAACACCCATCTCAAAACTGTGAAAATGACGACACGCAATCGC GAACCTCAGACTCTCGATAGCTTGGTCGCAAAAAGGAAGACACTCGAGGAAGAGGAGGGCGTGGCGCACGTGTTA TGGACCGAGGGCGGGGACGAGGAGGCAGAGGGCGTGGACGAGGCCGCAATTAACACTGGAGGATGCACGTTACAA ACCTGTAAACCATCTGTATCAACCTGTAACGTTTCATATGTTTTTCCGACATGGCCAACATGA |
| Gene | >Agabi119p4|694400 ATGAAGTTGGTTAGGTGTGTATATATCTCCATCCTTTGTCCCGTCTTTTCTCTGCAAATGGCAGAGCCAACTGGG CCGTCAAGAGGTTAGTTGGTGTTATTGTCGCTTGAACAGTTCCAGATTCATTTCTGCGTGTGTTTGGATCGGCGT AGATGTCTCTTTTTCATCAAAAATCTTCCCAAGAAGAATGATTGCAAACTGACGTCCGGTTTTTTTTCCCTTCAG GTTTTTGATGAAATTGAACAATGAGACCGTGACGGTCGAACTCAAAAATGGGTCTTTAGTGCACGGCACGATAAC AGGTGCGCAATATCGCTTGTTCCGTATGTAATCTTTTTGCTGAAATACTTGCTTATCTAGGAGTGGATATGCAAA TGAACACCCATCTCAAAACTGTGAAAATGACGACACGCAATCGCGAACCTCAGACTCTCGATAGCTTGTCTATCC GCGGAAACAACATCCGTTACTTTACACTTCCTGATGCTTTGCCACTGGATACCTTACTTGTCGATGATGCGCCCA AGCCCAAGGGTCGCAAAAAGGAAGACACTCGAGGAAGAGGAGGGCGTGGCGCACGTGTTATGGACCGAGGGCGGG GACGAGGAGGCAGAGGGCGTGGACGAGGCCGCAATTAACACTGGAGGATGGTATGTTGGCCACTGATCAGATTCC CTTATTCGCGTAATGAAATCAAGAGCGTATAAAGCACGTTACAAACCTGTAAACCATCTGTATCAACCTGTAACG TTTCATATGTTTTTCCGACATGGCCAACATGA |