Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|686450
Gene name
Locationscaffold_07:2047174..2048725
Strand+
Gene length (bp)1551
Transcript length (bp)1551
Coding sequence length (bp)1551
Protein length (aa) 517

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.4E-11 433 503
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.4E-11 11 136

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 322 508 2.0E-12

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|686450
MGIHPPRTAEWKVRNAWTMGLLIYNTTDPIGLGISIGGTAADAWRSYLDTYEVASEIATLNAEMELRNMVYTDGQ
DFTEFISRLGTKWSNANALGAKIDDKAFRTIILNSLPRSWDSIVATLYTTKTSWEAISQLLTHWARVSRDRVTTS
QTTSALQTTTTQSNNRNRQRSQNSQLTCTNPNCGRRGHTIELCYWPGGGKAGQFPPGFGRRGGAGGSASNTATGG
YQPSANNTTTNTTEKAESNEPKVFALAAITDIINDTPKVSSTLPILSNNPDGSLISTPSVSERPYAEICVTGKDQ
GVSVSTTLNTTTSTLPYDVITLLDSGASDHCFVNKSLFATYIPMIPPRQGNSAGKGSTFLIEGAGEVGFFTPLDG
APTKIILFDALHTPQLRSNLISVSKLVSRGSPVSFEGNTAVVRTRSGAVALIAMKENGLYVVPPVDVHANAVQSK
RKAVSLGTWHRRLSHASMEVIKKMLRENLVDGLSVTGPMELEGLCEDCIFGKHTSHPYNNPTSQEK*
Coding >Agabi119p4|686450
ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC
ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC
TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG
GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT
AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC
AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG
CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA
TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG
GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA
TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT
CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT
GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG
GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC
GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA
AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG
GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG
CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA
TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA
AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA
CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC
GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG
Transcript >Agabi119p4|686450
ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC
ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC
TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG
GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT
AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC
AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG
CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA
TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG
GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA
TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT
CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT
GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG
GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC
GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA
AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG
GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG
CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA
TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA
AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA
CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC
GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG
Gene >Agabi119p4|686450
ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC
ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC
TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG
GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT
AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC
AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG
CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA
TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG
GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA
TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT
CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT
GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG
GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC
GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA
AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG
GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG
CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA
TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA
AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA
CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC
GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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