Protein ID | Agabi119p4|686450 |
Gene name | |
Location | scaffold_07:2047174..2048725 |
Strand | + |
Gene length (bp) | 1551 |
Transcript length (bp) | 1551 |
Coding sequence length (bp) | 1551 |
Protein length (aa) | 517 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 1.4E-11 | 433 | 503 |
PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.4E-11 | 11 | 136 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P04146|COPIA_DROME | Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 | 322 | 508 | 2.0E-12 |
Orthofinder run ID | 5 |
Orthogroup | 61 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|686450 MGIHPPRTAEWKVRNAWTMGLLIYNTTDPIGLGISIGGTAADAWRSYLDTYEVASEIATLNAEMELRNMVYTDGQ DFTEFISRLGTKWSNANALGAKIDDKAFRTIILNSLPRSWDSIVATLYTTKTSWEAISQLLTHWARVSRDRVTTS QTTSALQTTTTQSNNRNRQRSQNSQLTCTNPNCGRRGHTIELCYWPGGGKAGQFPPGFGRRGGAGGSASNTATGG YQPSANNTTTNTTEKAESNEPKVFALAAITDIINDTPKVSSTLPILSNNPDGSLISTPSVSERPYAEICVTGKDQ GVSVSTTLNTTTSTLPYDVITLLDSGASDHCFVNKSLFATYIPMIPPRQGNSAGKGSTFLIEGAGEVGFFTPLDG APTKIILFDALHTPQLRSNLISVSKLVSRGSPVSFEGNTAVVRTRSGAVALIAMKENGLYVVPPVDVHANAVQSK RKAVSLGTWHRRLSHASMEVIKKMLRENLVDGLSVTGPMELEGLCEDCIFGKHTSHPYNNPTSQEK* |
Coding | >Agabi119p4|686450 ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG |
Transcript | >Agabi119p4|686450 ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG |
Gene | >Agabi119p4|686450 ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG |