Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|686450
Gene name
Locationscaffold_07:2047174..2048725
Strand+
Gene length (bp)1551
Transcript length (bp)1551
Coding sequence length (bp)1551
Protein length (aa) 517

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.4E-11 433 503
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.4E-11 11 136

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 322 508 2.0E-12

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID5
Orthogroup61
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|550200
Agaricus bisporus var bisporus H39 AgabiH39|299900
Agaricus bisporus var bisporus H97 AgabiH97|079920
Agaricus bisporus var bisporus H97 AgabiH97|032400
Agaricus bisporus var bisporus H97 AgabiH97|027490
Agaricus bisporus var bisporus H97 AgabiH97|025990
Agaricus bisporus var bisporus H97 AgabiH97|039170
Agaricus bisporus var burnettii H119p4 Agabi119p4|698050
Agaricus bisporus var burnettii H119p4 Agabi119p4|556250
Agaricus bisporus var burnettii H119p4 Agabi119p4|669400
Agaricus bisporus var burnettii H119p4 Agabi119p4|656400
Agaricus bisporus var burnettii H119p4 Agabi119p4|639550
Agaricus bisporus var burnettii H119p4 Agabi119p4|599750
Agaricus bisporus var burnettii H119p4 Agabi119p4|595950
Agaricus bisporus var burnettii H119p4 Agabi119p4|577300
Agaricus bisporus var burnettii H119p4 Agabi119p4|686450 (this protein)
Agaricus bisporus var burnettii H119p4 Agabi119p4|686500

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|686450
MGIHPPRTAEWKVRNAWTMGLLIYNTTDPIGLGISIGGTAADAWRSYLDTYEVASEIATLNAEMELRNMVYTDGQ
DFTEFISRLGTKWSNANALGAKIDDKAFRTIILNSLPRSWDSIVATLYTTKTSWEAISQLLTHWARVSRDRVTTS
QTTSALQTTTTQSNNRNRQRSQNSQLTCTNPNCGRRGHTIELCYWPGGGKAGQFPPGFGRRGGAGGSASNTATGG
YQPSANNTTTNTTEKAESNEPKVFALAAITDIINDTPKVSSTLPILSNNPDGSLISTPSVSERPYAEICVTGKDQ
GVSVSTTLNTTTSTLPYDVITLLDSGASDHCFVNKSLFATYIPMIPPRQGNSAGKGSTFLIEGAGEVGFFTPLDG
APTKIILFDALHTPQLRSNLISVSKLVSRGSPVSFEGNTAVVRTRSGAVALIAMKENGLYVVPPVDVHANAVQSK
RKAVSLGTWHRRLSHASMEVIKKMLRENLVDGLSVTGPMELEGLCEDCIFGKHTSHPYNNPTSQEK*
Coding >Agabi119p4|686450
ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC
ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC
TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG
GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT
AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC
AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG
CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA
TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG
GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA
TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT
CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT
GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG
GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC
GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA
AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG
GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG
CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA
TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA
AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA
CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC
GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG
Transcript >Agabi119p4|686450
ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC
ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC
TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG
GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT
AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC
AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG
CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA
TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG
GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA
TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT
CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT
GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG
GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC
GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA
AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG
GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG
CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA
TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA
AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA
CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC
GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG
Gene >Agabi119p4|686450
ATGGGAATCCACCCCCCACGCACTGCCGAATGGAAAGTCCGCAATGCCTGGACTATGGGTCTCCTCATTTACAAC
ACAACTGACCCTATCGGCCTTGGAATCTCTATCGGAGGAACAGCAGCCGATGCTTGGAGGTCGTACCTCGACACC
TATGAGGTCGCATCCGAGATTGCTACCCTTAACGCCGAAATGGAGTTGAGAAATATGGTATACACAGACGGGCAG
GATTTCACTGAATTCATATCACGCCTCGGAACTAAATGGTCAAATGCAAATGCTCTTGGGGCGAAAATTGACGAT
AAGGCATTCCGAACAATTATCTTGAACTCCTTGCCCCGCTCCTGGGACTCCATTGTCGCTACTTTGTACACCACC
AAAACGTCGTGGGAGGCTATAAGCCAACTTCTAACCCATTGGGCTAGAGTCAGCCGTGATCGAGTCACTACGTCG
CAGACTACTTCAGCTCTCCAAACCACTACCACACAGTCTAACAATCGCAACCGCCAACGAAGCCAAAACAGTCAA
TTAACTTGCACCAATCCCAATTGTGGCCGTAGGGGACATACCATCGAGCTTTGTTACTGGCCAGGTGGCGGAAAG
GCCGGGCAGTTTCCGCCTGGTTTTGGACGACGTGGGGGAGCAGGAGGTAGTGCCAGCAATACTGCTACCGGAGGA
TATCAGCCTTCTGCAAACAACACCACTACCAACACCACAGAGAAGGCAGAAAGCAACGAACCGAAGGTCTTCGCT
CTCGCTGCGATCACGGACATAATCAACGATACGCCAAAGGTATCATCCACCCTCCCAATACTTTCCAACAATCCT
GACGGCTCTTTGATTTCAACCCCTAGTGTCTCTGAGAGACCATATGCTGAGATCTGCGTAACGGGGAAGGATCAG
GGAGTTAGTGTTAGTACCACATTGAATACAACTACTTCCACTCTACCTTACGACGTGATTACTCTGCTCGATTCC
GGGGCGAGCGACCATTGCTTCGTTAATAAATCACTCTTCGCTACATACATTCCGATGATCCCACCTCGACAAGGA
AACTCCGCAGGCAAAGGTTCTACTTTTCTGATAGAGGGTGCGGGTGAAGTTGGCTTCTTCACTCCTCTTGACGGG
GCGCCAACAAAGATAATTTTGTTTGATGCACTTCATACCCCGCAACTGAGGTCAAACCTGATCTCGGTCTCCAAG
CTTGTATCACGGGGATCACCCGTTAGTTTTGAGGGGAATACAGCAGTTGTTCGTACCCGTAGCGGCGCAGTTGCA
TTGATAGCCATGAAGGAGAATGGTCTATATGTTGTACCGCCGGTTGACGTCCATGCGAATGCCGTGCAATCGAAA
AGGAAAGCTGTATCTTTGGGAACTTGGCACCGTCGTCTCAGCCACGCCAGCATGGAAGTCATCAAAAAGATGTTA
CGCGAAAACCTCGTAGATGGCTTGAGTGTTACAGGACCTATGGAGTTGGAAGGGCTCTGTGAAGACTGTATCTTC
GGCAAACATACCTCACATCCATACAATAATCCCACATCGCAGGAGAAATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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