Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|682800
Gene name
Location	scaffold_07:1522938..1524002
Strand	+
Gene length (bp)	1064
Transcript length (bp)	693
Coding sequence length (bp)	693
Protein length (aa)	231

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00657	Lipase_GDSL	GDSL-like Lipase/Acylhydrolase	2.5E-11	19	224

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P0DKJ6\|GDL4_ARATH	GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana GN=At1g20120 PE=2 SV=1	46	229	2.0E-09
sp\|P40602\|APG_ARATH	Anther-specific proline-rich protein APG OS=Arabidopsis thaliana GN=APG PE=2 SV=2	87	224	2.0E-07
sp\|P40603\|APG_BRANA	Anther-specific proline-rich protein APG (Fragment) OS=Brassica napus GN=APG PE=2 SV=1	89	219	5.0E-07

GO

GO Term	Description	Terminal node
GO:0016788	hydrolase activity, acting on ester bonds	Yes
GO:0003674	molecular_function	No
GO:0016787	hydrolase activity	No
GO:0003824	catalytic activity	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 16	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|682800 MYIYKLEFLTGCFQGSPFNCPKQLWNFAFAGADIDGDILPLHHDFTIPLVDQVTQWLKFASTVIPHPENETLTSW WIGINDTGDSHHNTSITDFTAFWEIEMQSYFKAVDLASRHGLKAHLFLNVPPGERSPGSSGNPGLLKDHIQLFNS ILVNHIDQFTKTHPDNVVITFDTHTWFNQILDHPEKYGFQNVTGFCTCVDPSGYFWYDSGHPTQHVHQLLAEAIQ HGLGG*
Coding	>Agabi119p4\|682800 ATGTATATATACAAGCTCGAATTCCTCACAGGATGCTTCCAAGGCAGTCCCTTCAATTGCCCTAAACAACTTTGG AATTTCGCATTTGCAGGCGCAGACATCGACGGGGATATACTTCCCCTACACCATGACTTCACCATTCCATTAGTC GACCAAGTTACTCAATGGCTAAAATTCGCATCGACCGTTATACCTCACCCCGAAAACGAGACTTTAACAAGCTGG TGGATCGGGATCAATGACACTGGTGATTCTCATCACAATACCTCCATCACTGATTTTACAGCATTTTGGGAAATA GAGATGCAATCCTACTTTAAAGCTGTTGACCTAGCATCCAGGCATGGTCTCAAAGCCCATCTTTTCCTCAACGTC CCACCGGGAGAAAGGTCTCCAGGATCTTCAGGAAACCCTGGACTATTAAAAGATCACATACAACTCTTCAACAGC ATTCTTGTCAATCATATCGATCAATTCACCAAAACGCATCCAGATAACGTTGTTATCACTTTCGACACTCATACC TGGTTCAATCAAATCCTTGACCATCCAGAGAAATATGGATTCCAGAATGTCACAGGGTTCTGTACATGTGTTGAC CCGAGTGGCTATTTCTGGTATGATAGCGGCCATCCAACACAACATGTCCACCAGCTTCTGGCCGAGGCCATACAA CATGGATTAGGCGGCTGA
Transcript	>Agabi119p4\|682800 ATGTATATATACAAGCTCGAATTCCTCACAGGATGCTTCCAAGGCAGTCCCTTCAATTGCCCTAAACAACTTTGG AATTTCGCATTTGCAGGCGCAGACATCGACGGGGATATACTTCCCCTACACCATGACTTCACCATTCCATTAGTC GACCAAGTTACTCAATGGCTAAAATTCGCATCGACCGTTATACCTCACCCCGAAAACGAGACTTTAACAAGCTGG TGGATCGGGATCAATGACACTGGTGATTCTCATCACAATACCTCCATCACTGATTTTACAGCATTTTGGGAAATA GAGATGCAATCCTACTTTAAAGCTGTTGACCTAGCATCCAGGCATGGTCTCAAAGCCCATCTTTTCCTCAACGTC CCACCGGGAGAAAGGTCTCCAGGATCTTCAGGAAACCCTGGACTATTAAAAGATCACATACAACTCTTCAACAGC ATTCTTGTCAATCATATCGATCAATTCACCAAAACGCATCCAGATAACGTTGTTATCACTTTCGACACTCATACC TGGTTCAATCAAATCCTTGACCATCCAGAGAAATATGGATTCCAGAATGTCACAGGGTTCTGTACATGTGTTGAC CCGAGTGGCTATTTCTGGTATGATAGCGGCCATCCAACACAACATGTCCACCAGCTTCTGGCCGAGGCCATACAA CATGGATTAGGCGGCTGA
Gene	>Agabi119p4\|682800 ATGTATATATACAAGCTCGAATTCCTCACAGGATGCTTCCAAGGCAGTCCCTTCAATTGCCCTAAACAACTTTGG AATTTCGCATTTGCAGGCGCAGACATCGACGGGGATATGTAAGTTTTGACATGACACCCACACACATCTCCTAAC ATTCTGGCCTTAGACTTCCCCTACACCATGACTTCACCATTCCATTAGTCGACCAAGTTACTCAATGGCTAAAAT TCGCATCGACCGTTATACCTCACCCCGAAAACGAGACTTTAACAAGCTGGTGGATCGGGATCAATGACACTGGTG ATTCTCATCACAATACCTCCGTTCGTCAAGTCGCCTTTTTTTTCATAGACAAGGCTGTTGAACCAAATGTTACTT ACACGCAGATCACTGATTTTACAGCATTTTGGGAAATAGAGATGCAATCCTACTTTAAAGCTGTTGCAAGTCAAG TTCCCCCTTACCACACGCCTAACATATGGGCCTCTAACCATTTTCATAGGACCTAGCATCCAGGCATGGTCTCAA AGCCCATCTTTTCCTCAACGTCCCACCGGGAGAAAGGTCTCCAGGATCTTCAGGAAACCCTGGACTATTAAAAGA TCACATACAACTCTTCAACAGCATTCTTGTCAATCATATCGATCAATTCACCAAAACGCATCCAGGTACAGTGCT CCTCATTCATTCACATCTGCAGCTGAAGATCACTCGGTGATACTGATGTTTATTATAGATAACGTTGTTATCACT TTCGACACTCATACCTGGTTCAATCAAATCCTTGACCATCCAGAGAAATATGGATTCCAGAATGTCACAGGGTAT GTTAAATACAGAAATAAACGGATGCCATACCTTTTTCGACTCTTAACGTTTTCCTCACCGCGGAATTTGCAGGTT CTGTACATGTGTTGACCCGAGTGGCTATTTCTGGTATGGTAAGTTCCTGCCTGACACATCATTGCACATGTCCAG CTCTTGAACCTCGTGTAGATAGCGGCCATCCAACACAACATGTCCACCAGCTTCTGGCCGAGGCCATACAACATG GATTAGGCGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail