© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|673050 |
| Gene name | |
| Location | scaffold_07:31519..32444 |
| Strand | + |
| Gene length (bp) | 925 |
| Transcript length (bp) | 489 |
| Coding sequence length (bp) | 489 |
| Protein length (aa) | 163 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01981 | PTH2 | Peptidyl-tRNA hydrolase PTH2 | 2.3E-42 | 49 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3ZBL5|PTH2_BOVIN | Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1 | 43 | 161 | 3.0E-33 |
| sp|Q9Y3E5|PTH2_HUMAN | Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1 | 43 | 161 | 7.0E-33 |
| sp|Q8R2Y8|PTH2_MOUSE | Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=1 SV=1 | 43 | 161 | 7.0E-33 |
| sp|O13830|PTH2_SCHPO | Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19A8.14 PE=1 SV=1 | 46 | 162 | 2.0E-32 |
| sp|P34222|PTH2_YEAST | Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTH2 PE=1 SV=2 | 48 | 161 | 3.0E-28 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3ZBL5|PTH2_BOVIN | Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1 | 43 | 161 | 3.0E-33 |
| sp|Q9Y3E5|PTH2_HUMAN | Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1 | 43 | 161 | 7.0E-33 |
| sp|Q8R2Y8|PTH2_MOUSE | Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=1 SV=1 | 43 | 161 | 7.0E-33 |
| sp|O13830|PTH2_SCHPO | Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19A8.14 PE=1 SV=1 | 46 | 162 | 2.0E-32 |
| sp|P34222|PTH2_YEAST | Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTH2 PE=1 SV=2 | 48 | 161 | 3.0E-28 |
| sp|Q54ZD0|PTH2_DICDI | Probable peptidyl-tRNA hydrolase 2 OS=Dictyostelium discoideum GN=pth2 PE=3 SV=1 | 38 | 161 | 4.0E-28 |
| sp|O97067|PTH2_DROME | Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster GN=CG1307 PE=2 SV=2 | 46 | 162 | 7.0E-27 |
| sp|Q60363|PTH_METJA | Peptidyl-tRNA hydrolase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pth PE=1 SV=1 | 50 | 162 | 4.0E-22 |
| sp|O76387|PTH2_CAEEL | Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabditis elegans GN=C24G6.8 PE=3 SV=1 | 50 | 162 | 1.0E-20 |
| sp|C6A1K8|PTH_THESM | Peptidyl-tRNA hydrolase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pth PE=3 SV=1 | 50 | 162 | 2.0E-20 |
| sp|A6UWF5|PTH_META3 | Peptidyl-tRNA hydrolase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pth PE=3 SV=1 | 50 | 162 | 4.0E-20 |
| sp|Q5JDB8|PTH_THEKO | Peptidyl-tRNA hydrolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pth PE=3 SV=1 | 50 | 162 | 1.0E-19 |
| sp|Q976I0|PTH_SULTO | Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=pth PE=3 SV=1 | 50 | 162 | 3.0E-19 |
| sp|B6YTE3|PTH_THEON | Peptidyl-tRNA hydrolase OS=Thermococcus onnurineus (strain NA1) GN=pth PE=3 SV=1 | 50 | 162 | 3.0E-19 |
| sp|Q9V108|PTH_PYRAB | Peptidyl-tRNA hydrolase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pth PE=3 SV=2 | 50 | 162 | 3.0E-19 |
| sp|Q980V1|PTH_SULSO | Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=pth PE=1 SV=1 | 49 | 162 | 4.0E-19 |
| sp|O27732|PTH_METTH | Peptidyl-tRNA hydrolase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=pth PE=3 SV=1 | 50 | 162 | 1.0E-18 |
| sp|Q8U0N0|PTH_PYRFU | Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pth PE=3 SV=1 | 50 | 162 | 1.0E-18 |
| sp|P61414|PTH_HALSA | Peptidyl-tRNA hydrolase OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=pth PE=3 SV=1 | 50 | 162 | 2.0E-18 |
| sp|B0R2Y5|PTH_HALS3 | Peptidyl-tRNA hydrolase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=pth PE=3 SV=1 | 50 | 162 | 2.0E-18 |
| sp|Q5V1D3|PTH_HALMA | Peptidyl-tRNA hydrolase OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=pth PE=3 SV=2 | 50 | 162 | 2.0E-18 |
| sp|A6USA3|PTH_METVS | Peptidyl-tRNA hydrolase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pth PE=3 SV=1 | 53 | 162 | 6.0E-18 |
| sp|C3MZS7|PTH_SULIA | Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.27) GN=pth PE=3 SV=1 | 49 | 162 | 8.0E-18 |
| sp|C4KJ09|PTH_SULIK | Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pth PE=3 SV=1 | 49 | 162 | 8.0E-18 |
| sp|C3MJ30|PTH_SULIL | Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pth PE=3 SV=1 | 49 | 162 | 8.0E-18 |
| sp|C3NF60|PTH_SULIN | Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pth PE=3 SV=1 | 49 | 162 | 8.0E-18 |
| sp|C3N851|PTH_SULIY | Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pth PE=3 SV=1 | 49 | 162 | 8.0E-18 |
| sp|C3MYS2|PTH_SULIM | Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pth PE=3 SV=1 | 49 | 162 | 8.0E-18 |
| sp|B9LTP1|PTH_HALLT | Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pth PE=3 SV=1 | 49 | 161 | 1.0E-17 |
| sp|Q877G5|PTH_SULAC | Peptidyl-tRNA hydrolase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=pth PE=3 SV=1 | 50 | 162 | 3.0E-17 |
| sp|A9A6B6|PTH_METM6 | Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pth PE=3 SV=1 | 53 | 162 | 5.0E-17 |
| sp|A4YD82|PTH_METS5 | Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pth PE=3 SV=1 | 50 | 162 | 7.0E-17 |
| sp|A4FYL9|PTH_METM5 | Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pth PE=3 SV=1 | 53 | 162 | 1.0E-16 |
| sp|A8MBW8|PTH_CALMQ | Peptidyl-tRNA hydrolase OS=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) GN=pth PE=3 SV=1 | 48 | 162 | 1.0E-16 |
| sp|A6VJR3|PTH_METM7 | Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pth PE=3 SV=1 | 53 | 162 | 2.0E-16 |
| sp|A3DMF7|PTH_STAMF | Peptidyl-tRNA hydrolase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / JCM 9404 / F1) GN=pth PE=3 SV=1 | 46 | 162 | 4.0E-16 |
| sp|Q97CB4|PTH_THEVO | Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=pth PE=3 SV=1 | 50 | 162 | 5.0E-16 |
| sp|P61234|PTH_METMP | Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain S2 / LL) GN=pth PE=3 SV=1 | 53 | 162 | 5.0E-16 |
| sp|O28185|PTH_ARCFU | Peptidyl-tRNA hydrolase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=pth PE=1 SV=1 | 49 | 162 | 1.0E-15 |
| sp|Q9HLW6|PTH_THEAC | Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=pth PE=1 SV=1 | 50 | 162 | 1.0E-15 |
| sp|Q8Q0M4|PTH_METMA | Peptidyl-tRNA hydrolase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=pth PE=3 SV=2 | 48 | 162 | 4.0E-15 |
| sp|Q12WH8|PTH_METBU | Peptidyl-tRNA hydrolase OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=pth PE=3 SV=1 | 48 | 162 | 5.0E-15 |
| sp|Q466V4|PTH_METBF | Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=pth PE=3 SV=1 | 48 | 162 | 8.0E-15 |
| sp|Q8TKX4|PTH_METAC | Peptidyl-tRNA hydrolase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pth PE=3 SV=1 | 48 | 162 | 1.0E-14 |
| sp|Q8TV04|PTH_METKA | Peptidyl-tRNA hydrolase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pth PE=3 SV=1 | 50 | 162 | 1.0E-13 |
| sp|O74017|PTH_PYRHO | Peptidyl-tRNA hydrolase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pth PE=1 SV=1 | 50 | 162 | 3.0E-13 |
| sp|P61235|PTH_NANEQ | Peptidyl-tRNA hydrolase OS=Nanoarchaeum equitans (strain Kin4-M) GN=pth PE=3 SV=1 | 50 | 161 | 4.0E-13 |
| sp|Q9J5H2|V029_FOWPN | Putative peptidyl-tRNA hydrolase OS=Fowlpox virus (strain NVSL) GN=FPV029 PE=3 SV=1 | 38 | 162 | 1.0E-12 |
| sp|Q9YBD6|PTH_AERPE | Peptidyl-tRNA hydrolase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pth PE=3 SV=1 | 47 | 162 | 3.0E-12 |
| sp|Q18KN8|PTH_HALWD | Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) GN=pth PE=3 SV=1 | 50 | 161 | 4.0E-12 |
| sp|Q8ZYM4|PTH_PYRAE | Peptidyl-tRNA hydrolase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=pth PE=3 SV=1 | 48 | 161 | 5.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004045 | aminoacyl-tRNA hydrolase activity | Yes |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0140101 | catalytic activity, acting on a tRNA | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| Orthofinder run ID | 5 |
| Orthogroup | 8481 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Agaricus bisporus var bisporus H39 | AgabiH39|097300 |
| Agaricus bisporus var bisporus H97 | AgabiH97|097300 |
| Agaricus bisporus var burnettii H119p4 | Agabi119p4|673050 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|673050 MGGIPDDSLWYATALIASLSIGFFAGATYARDFRRVLNVNPELSPDDDCKMVLVVRTDLGMRTGKIAAQCSHATL ACYQTLQVDNPVLLRQWERAGQTKVALRCSSEDELLDLQAKAKSLRLCARSIRDAGRTQIAAGSRTVLGIAGPTR LVNQVTSKLRLL* |
| Coding | >Agabi119p4|673050 ATGGGTGGAATCCCGGATGATTCTTTGTGGTATGCGACTGCTCTCATAGCATCATTGAGTATCGGATTCTTTGCC GGCGCAACCTATGCTCGCGACTTCAGAAGGGTTTTGAACGTGAATCCCGAACTGTCACCCGACGATGATTGCAAA ATGGTGCTAGTCGTGAGGACAGATCTTGGAATGCGTACAGGAAAGATTGCTGCTCAGTGCTCCCATGCGACGTTA GCCTGTTACCAAACCCTACAAGTCGATAATCCCGTCCTTCTACGCCAATGGGAGCGAGCCGGTCAAACCAAAGTT GCGCTTCGATGTTCGAGTGAAGATGAGCTCCTAGATTTGCAAGCGAAAGCGAAAAGTTTGAGGTTATGCGCTCGT TCTATCCGAGATGCCGGAAGGACACAGATTGCAGCTGGTTCTCGGACGGTTCTTGGTATAGCTGGACCTACTCGG TTGGTCAACCAAGTCACTAGTAAATTACGTTTGCTTTGA |
| Transcript | >Agabi119p4|673050 ATGGGTGGAATCCCGGATGATTCTTTGTGGTATGCGACTGCTCTCATAGCATCATTGAGTATCGGATTCTTTGCC GGCGCAACCTATGCTCGCGACTTCAGAAGGGTTTTGAACGTGAATCCCGAACTGTCACCCGACGATGATTGCAAA ATGGTGCTAGTCGTGAGGACAGATCTTGGAATGCGTACAGGAAAGATTGCTGCTCAGTGCTCCCATGCGACGTTA GCCTGTTACCAAACCCTACAAGTCGATAATCCCGTCCTTCTACGCCAATGGGAGCGAGCCGGTCAAACCAAAGTT GCGCTTCGATGTTCGAGTGAAGATGAGCTCCTAGATTTGCAAGCGAAAGCGAAAAGTTTGAGGTTATGCGCTCGT TCTATCCGAGATGCCGGAAGGACACAGATTGCAGCTGGTTCTCGGACGGTTCTTGGTATAGCTGGACCTACTCGG TTGGTCAACCAAGTCACTAGTAAATTACGTTTGCTTTGA |
| Gene | >Agabi119p4|673050 ATGGGTGGAATCCCGGATGGTACGTGCAGTAATTCTACTTACAGACGCGTCTGACGAATTCAAGGACCTGTTAGA TTCTTTGTGGTATGCGACTGCTCTCATAGCATCATTGAGTATCGGATTCTTTGCCGGCGCAACCTATGCTCGCGA CTTCAGAAGGGTTTTGAACGTGAATCCCGAACTGTCACCCGACGATGATTGCAAAATGGTAAGCCGATCCCTTCC TCATTGGAACTTTATTAGACTGGTGGGATTCTGCGCAAGGTGCTAGTCGTGAGGACAGATCTTGGAATGCGTACA GGAAAGATTGCTGCTCAGTATGCTCGTATTCTGTATACTCATCCATTCAAGCCACGTCTAACCAATGTTCACAGG TGCTCGTAAGACCATCCACCTATTCAGCTATCCCTTTGGTTGAATGTTCAACAGCCATGCGACGTTAGCCTGTTA CCAAACCCTACAAGTCGATAATCCCGTCGTAAGTGTTCCTTTCACGCGTCGGGCGCCATGGACGTTTATCCTTTT ATATAGCTTCTACGCCAATGGGAGCGAGCCGGGTACGTCCTTCGACTCAATTGTCATGATAGCGTCTTCTCATTC TGTTGAATTCAACTAGTCAAACCAAAGTTGCGCTTCGATGTTCGAGTGAAGATGAGCTCCTAGATTTGCAAGCGA AAGCGAAAAGTTTGAGGTTATGCGCTCGTTCTATCCGAGATGCGTGAGTATTTGACACAGTGCTATCGAAAACTG CTCAAAGAATACCTTTTGTTAGCGGAAGGACACAGATTGCAGCTGGTTCTCGGACGGTTCTTGGTATAGCTGGTA AGCTGTCTCGTTACTACTGTTCCTTTCTCGAGGCCTGAGTCGATTTTCAGGACCTACTCGGTTGGTCAACCAAGT CACTAGTAAATTACGTTTGCTTTGA |